Wall clock time and date at job start Sun Mar 29 2020 22:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47346 * 2 1 4 4 C 1.36934 * 120.00229 * 275.31347 * 3 2 1 5 5 H 1.07996 * 119.99866 * 37.57071 * 4 3 2 6 6 C 1.38807 * 119.99945 * 217.57467 * 4 3 2 7 7 N 1.31622 * 120.00030 * 21.42815 * 6 4 3 8 8 Si 1.86794 * 120.00172 * 201.42993 * 6 4 3 9 9 H 1.48500 * 109.47117 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47195 * 119.99927 * 8 6 4 11 11 H 1.48494 * 109.47507 * 240.00187 * 8 6 4 12 12 C 1.46502 * 119.99564 * 95.30606 * 3 2 1 13 13 C 1.53000 * 109.47542 * 270.00116 * 12 3 2 14 14 N 1.46493 * 109.47388 * 180.02562 * 13 12 3 15 15 C 1.34773 * 120.00378 * 179.97438 * 14 13 12 16 16 O 1.21620 * 119.99757 * 0.02562 * 15 14 13 17 17 C 1.47101 * 120.00443 * 179.97438 * 15 14 13 18 18 C 1.32606 * 124.62251 * 180.02562 * 17 15 14 19 19 C 1.51117 * 110.76207 * 179.74160 * 18 17 15 20 20 C 1.54583 * 104.83390 * 16.83902 * 19 18 17 21 21 C 1.51111 * 124.61754 * 0.17358 * 17 15 14 22 22 H 1.09001 * 109.46818 * 59.99708 * 1 2 3 23 23 H 1.08999 * 109.46972 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47121 * 300.00322 * 1 2 3 25 25 H 1.08997 * 109.47189 * 240.00223 * 2 1 3 26 26 H 1.09001 * 109.46818 * 120.00292 * 2 1 3 27 27 H 0.96999 * 119.99710 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.46750 * 150.00270 * 12 3 2 29 29 H 1.09001 * 109.47292 * 30.00816 * 12 3 2 30 30 H 1.09004 * 109.46973 * 60.00290 * 13 12 3 31 31 H 1.09004 * 109.46970 * 300.00907 * 13 12 3 32 32 H 0.97006 * 119.99681 * 0.02562 * 14 13 12 33 33 H 1.08000 * 124.62203 * 0.02562 * 18 17 15 34 34 H 1.08992 * 110.36576 * 135.68011 * 19 18 17 35 35 H 1.09003 * 110.36520 * 258.00700 * 19 18 17 36 36 H 1.09005 * 110.97837 * 93.08092 * 20 19 18 37 37 H 1.08998 * 110.98099 * 216.86843 * 20 19 18 38 38 H 1.09004 * 110.50848 * 44.70202 * 21 17 15 39 39 H 1.09004 * 110.26341 * 282.46578 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0634 -1.1808 5 1 1.4106 1.9279 -1.9626 6 6 3.2112 2.9290 -1.3727 7 7 4.3027 2.7981 -0.6490 8 14 3.0993 4.2797 -2.6582 9 1 1.7772 4.2144 -3.3311 10 1 3.2550 5.6024 -2.0012 11 1 4.1765 4.0966 -3.6637 12 6 2.3732 2.0326 1.2634 13 6 1.1426 2.7382 1.8367 14 7 1.4976 3.3901 3.0996 15 6 0.5653 4.0777 3.7885 16 8 -0.5708 4.1566 3.3617 17 6 0.9216 4.7318 5.0570 18 6 0.0797 5.4291 5.8076 19 6 0.7733 5.9560 7.0424 20 6 2.2824 5.8392 6.7289 21 6 2.2977 4.7033 5.6807 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 5.0491 3.4027 -0.7834 28 1 3.1617 2.7641 1.0861 29 1 2.7255 1.2833 1.9722 30 1 0.3541 2.0068 2.0140 31 1 0.7903 3.4876 1.1278 32 1 2.4039 3.3275 3.4398 33 1 -0.9612 5.5939 5.5711 34 1 0.5012 6.9972 7.2152 35 1 0.5179 5.3472 7.9098 36 1 2.6659 6.7672 6.3046 37 1 2.8452 5.5569 7.6187 38 1 3.0624 4.8926 4.9273 39 1 2.4729 3.7426 6.1649 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663372895.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:43 Heat of formation + Delta-G solvation = -13.851822 kcal Electronic energy + Delta-G solvation = -18625.054220 eV Core-core repulsion = 15761.006161 eV Total energy + Delta-G solvation = -2864.048059 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.68774 -37.66946 -36.24717 -34.04404 -31.88311 -30.10449 -29.19777 -28.49862 -27.20216 -24.28907 -22.48113 -21.44728 -20.56736 -20.30319 -18.52256 -17.13418 -16.51025 -15.82225 -15.30391 -15.08762 -14.57819 -14.09162 -13.81457 -13.63763 -12.95458 -12.74811 -12.59112 -12.38916 -12.11335 -11.99789 -11.72248 -11.49499 -11.36819 -11.28609 -11.12192 -10.78114 -10.62696 -10.48385 -10.07848 -9.85454 -9.83196 -9.50560 -8.98871 -8.55068 -8.40085 -6.62501 -5.83675 -3.42343 1.48960 3.34070 3.43342 3.47305 3.59443 3.67111 4.42427 4.45947 4.52679 4.83941 5.05247 5.20861 5.28448 5.49718 5.54180 5.56580 5.68239 5.69070 5.81457 6.00183 6.01767 6.11519 6.18156 6.31727 6.39409 6.45869 6.51562 6.54236 6.69759 6.91200 6.92745 7.04341 7.17525 7.54916 7.80728 7.99477 8.48109 8.63830 9.14691 9.76643 10.34699 11.16443 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.021236 B = 0.005361 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.183678 B = 5222.011554 C = 5851.465032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.260 4.260 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.888 5.888 8 Si 0.896 3.104 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.137 3.863 13 C 0.097 3.903 14 N -0.713 5.713 15 C 0.556 3.444 16 O -0.552 6.552 17 C -0.184 4.184 18 C -0.088 4.088 19 C -0.105 4.105 20 C -0.123 4.123 21 C -0.094 4.094 22 H 0.050 0.950 23 H 0.036 0.964 24 H 0.044 0.956 25 H 0.046 0.954 26 H 0.034 0.966 27 H 0.254 0.746 28 H 0.098 0.902 29 H 0.028 0.972 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.397 0.603 33 H 0.136 0.864 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.406 3.185 14.358 14.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.301 5.301 4 C -0.389 4.389 5 H 0.080 0.920 6 C -0.187 4.187 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.010 3.990 13 C -0.029 4.029 14 N -0.363 5.363 15 C 0.343 3.657 16 O -0.431 6.431 17 C -0.187 4.187 18 C -0.108 4.108 19 C -0.142 4.142 20 C -0.160 4.160 21 C -0.131 4.131 22 H 0.069 0.931 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.116 0.884 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.231 0.769 33 H 0.154 0.846 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.017 3.269 13.979 14.670 hybrid contribution 0.312 0.736 -0.524 0.956 sum -2.705 4.005 13.455 14.297 Atomic orbital electron populations 1.22391 0.99919 0.99074 1.01418 1.20879 0.91767 0.86972 0.98879 1.43622 1.76055 1.08317 1.02096 1.19065 1.04746 1.21177 0.93954 0.92030 1.25178 0.94154 1.01226 0.98136 1.70005 1.03188 1.37298 1.42536 0.86339 0.77791 0.82177 0.81189 1.19950 1.21399 1.21559 1.21057 0.94576 0.96950 0.86420 1.22465 1.01070 0.96555 0.82775 1.46048 1.13055 1.52759 1.24452 1.18006 0.85121 0.78809 0.83795 1.90766 1.20483 1.61838 1.70059 1.21981 0.97669 1.02762 0.96313 1.23976 0.99383 0.93630 0.93789 1.21453 0.94798 1.01489 0.96434 1.22426 0.95886 0.98892 0.98844 1.21272 0.94318 0.99552 0.97955 0.93104 0.94448 0.93667 0.93570 0.94743 0.93579 0.88400 0.95313 0.92962 0.91749 0.76894 0.84639 0.90484 0.89912 0.90842 0.90627 0.90482 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 10.21 37.16 0.38 -2.80 16 2 C 0.14 2.99 6.44 -4.04 -0.03 2.97 16 3 N -0.58 -14.27 2.43 -173.23 -0.42 -14.70 16 4 C -0.26 -7.04 9.45 -15.06 -0.14 -7.19 16 5 H 0.06 1.69 7.92 -52.49 -0.42 1.27 16 6 C 0.01 0.36 4.95 -17.43 -0.09 0.28 16 7 N -0.89 -24.89 11.47 55.49 0.64 -24.25 16 8 Si 0.90 21.55 29.60 -169.99 -5.03 16.52 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 C 0.14 3.11 5.45 -4.04 -0.02 3.08 16 13 C 0.10 2.03 6.00 -4.05 -0.02 2.00 16 14 N -0.71 -12.65 5.55 -61.49 -0.34 -12.99 16 15 C 0.56 10.06 7.79 -12.67 -0.10 9.96 16 16 O -0.55 -12.10 16.77 5.26 0.09 -12.01 16 17 C -0.18 -2.55 6.10 -102.73 -0.63 -3.17 16 18 C -0.09 -1.06 10.43 -36.01 -0.38 -1.44 16 19 C -0.10 -0.90 6.80 -26.85 -0.18 -1.09 16 20 C -0.12 -1.04 7.16 -25.07 -0.18 -1.22 16 21 C -0.09 -0.99 6.01 -26.86 -0.16 -1.15 16 22 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.04 0.86 6.64 -51.93 -0.34 0.52 16 25 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 26 H 0.03 0.68 7.83 -51.93 -0.41 0.27 16 27 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.10 2.47 5.52 -51.93 -0.29 2.19 16 29 H 0.03 0.60 7.86 -51.93 -0.41 0.20 16 30 H 0.05 1.12 6.64 -51.93 -0.34 0.77 16 31 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.40 6.02 7.49 -40.82 -0.31 5.71 16 33 H 0.14 1.67 8.03 -52.49 -0.42 1.25 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.81 7.85 -51.93 -0.41 0.40 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 321.25 15.07 4.84 4.84 Total: -1.00 -31.06 321.25 -8.05 -39.11 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.28 Total: 3.24 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -1.55 Total: 0.24 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.13 Total: -51.94 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.06 -8.05 -39.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663372895.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.262 kcal (2) G-P(sol) polarization free energy of solvation -31.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds