Wall clock time and date at job start Sun Mar 29 2020 23:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 119.99679 * 2 1 4 4 C 1.52997 * 109.47473 * 90.00212 * 3 2 1 5 5 N 1.46505 * 109.47212 * 179.97438 * 4 3 2 6 6 C 1.36936 * 119.99992 * 179.97438 * 5 4 3 7 7 H 1.08006 * 119.99834 * 0.02562 * 6 5 4 8 8 C 1.38801 * 120.00093 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00176 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00265 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46725 * 59.99976 * 10 8 6 12 12 H 1.48498 * 109.47172 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46920 * 300.00189 * 10 8 6 14 14 C 1.34774 * 120.00048 * 179.97438 * 2 1 3 15 15 O 1.21286 * 119.99764 * 179.97438 * 14 2 1 16 16 C 1.50697 * 120.00258 * 0.02562 * 14 2 1 17 17 H 1.08999 * 115.55865 * 34.25826 * 16 14 2 18 18 C 1.53123 * 117.51112 * 248.46258 * 16 14 2 19 19 C 1.52457 * 59.85723 * 252.54839 * 18 16 14 20 20 C 1.53262 * 128.58420 * 117.59599 * 19 18 16 21 21 C 1.53892 * 86.88000 * 114.94771 * 20 19 18 22 22 C 1.53255 * 128.58688 * 242.39926 * 19 18 16 23 23 H 1.08996 * 109.47220 * 90.00398 * 1 2 3 24 24 H 1.09001 * 109.46688 * 210.00173 * 1 2 3 25 25 H 1.08998 * 109.47230 * 329.99640 * 1 2 3 26 26 H 1.09002 * 109.47129 * 329.99954 * 3 2 1 27 27 H 1.08998 * 109.46845 * 210.00761 * 3 2 1 28 28 H 1.09002 * 109.47153 * 59.99757 * 4 3 2 29 29 H 1.09001 * 109.46832 * 299.99948 * 4 3 2 30 30 H 0.96996 * 119.99606 * 0.02562 * 5 4 3 31 31 H 0.97001 * 120.00803 * 179.97438 * 9 8 6 32 32 H 1.09002 * 117.51419 * 359.97438 * 18 16 14 33 33 H 1.08998 * 117.51553 * 145.09786 * 18 16 14 34 34 H 1.09000 * 113.64690 * 229.44406 * 20 19 18 35 35 H 1.08995 * 113.64306 * 0.45459 * 20 19 18 36 36 H 1.08998 * 113.59071 * 270.39663 * 21 20 19 37 37 H 1.09004 * 113.58767 * 139.56882 * 21 20 19 38 38 H 1.09005 * 113.64418 * 359.55427 * 22 19 18 39 39 H 1.09002 * 113.64641 * 130.55720 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 1.4424 5 7 3.1855 2.9790 1.4424 6 6 3.5275 3.5722 2.6282 7 1 3.2572 3.1047 3.5636 8 6 4.2215 4.7743 2.6282 9 7 4.5504 5.3443 1.4884 10 14 4.6887 5.5832 4.2459 11 1 5.5595 4.6662 5.0244 12 1 5.4192 6.8473 3.9745 13 1 3.4593 5.8787 5.0248 14 6 2.1389 -1.1672 0.0005 15 8 3.3518 -1.1671 0.0001 16 6 1.3855 -2.4723 0.0005 17 1 0.4467 -2.4734 -0.5534 18 6 1.4632 -3.3338 1.2640 19 6 2.2044 -3.7583 0.0012 20 6 3.7126 -3.9311 -0.2094 21 6 3.4262 -5.4280 -0.4230 22 6 2.0042 -5.0193 -0.8464 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5139 26 1 1.6083 2.0284 -0.5138 27 1 3.1498 1.1385 -0.5139 28 1 3.0416 0.9509 1.9563 29 1 1.5001 1.8408 1.9563 30 1 3.4279 3.3990 0.6023 31 1 5.0351 6.1845 1.4882 32 1 2.0595 -2.9566 2.0948 33 1 0.5752 -3.9017 1.5416 34 1 4.0904 -3.4270 -1.0990 35 1 4.3051 -3.7222 0.6812 36 1 3.4563 -6.0133 0.4960 37 1 4.0101 -5.8732 -1.2286 38 1 1.2272 -5.6827 -0.4664 39 1 1.9065 -4.8181 -1.9132 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664214034.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:30 Heat of formation + Delta-G solvation = 28.337867 kcal Electronic energy + Delta-G solvation = -18467.815943 eV Core-core repulsion = 15605.597367 eV Total energy + Delta-G solvation = -2862.218576 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.41373 -38.56285 -35.77977 -34.33900 -33.69047 -31.32542 -28.36816 -26.48808 -25.76892 -24.58997 -23.20662 -22.81359 -21.27939 -19.13136 -18.21465 -17.24246 -16.99236 -15.93772 -15.36297 -15.24622 -15.04137 -14.39328 -14.11768 -13.42385 -13.24245 -13.00115 -12.87148 -12.66688 -12.41973 -12.28808 -12.01393 -11.65822 -11.54772 -11.22934 -10.95565 -10.86664 -10.63507 -10.44129 -10.18741 -10.11536 -9.83260 -9.73227 -9.44942 -8.83718 -8.42520 -6.89960 -5.72883 -3.02122 2.63831 3.09520 3.47182 3.51041 3.52656 3.68728 4.19884 4.49599 4.60063 4.65210 4.67007 4.77591 4.92119 5.17181 5.23706 5.39830 5.40499 5.49729 5.54907 5.58129 5.68635 5.69251 5.70785 5.74461 5.85475 5.89341 6.08285 6.09515 6.17709 6.21035 6.31616 6.61995 6.79194 6.96612 7.58894 7.72642 8.40124 8.46043 9.56376 10.12919 10.48227 11.50051 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.034348 B = 0.004012 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.999547 B = 6978.181473 C = 7295.169026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.611 5.611 3 C 0.108 3.892 4 C 0.144 3.856 5 N -0.730 5.730 6 C -0.238 4.238 7 H 0.069 0.931 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.539 3.461 15 O -0.528 6.528 16 C -0.177 4.177 17 H 0.121 0.879 18 C -0.122 4.122 19 C -0.128 4.128 20 C -0.083 4.083 21 C -0.142 4.142 22 C -0.098 4.098 23 H 0.053 0.947 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.022 0.978 29 H 0.017 0.983 30 H 0.384 0.616 31 H 0.256 0.744 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.278 -20.222 -5.442 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.344 5.344 3 C -0.014 4.014 4 C 0.015 3.985 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.087 0.913 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.740 3.260 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.213 1.213 14 C 0.327 3.673 15 O -0.404 6.404 16 C -0.198 4.198 17 H 0.139 0.861 18 C -0.159 4.159 19 C -0.128 4.128 20 C -0.120 4.120 21 C -0.180 4.180 22 C -0.135 4.135 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.040 0.960 29 H 0.035 0.965 30 H 0.217 0.783 31 H 0.066 0.934 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.604 -20.164 -5.279 22.949 hybrid contribution 0.066 0.857 0.626 1.064 sum -9.538 -19.306 -4.653 22.031 Atomic orbital electron populations 1.21784 0.79804 1.03357 1.01429 1.47741 1.06887 1.06173 1.73611 1.21690 0.97445 0.83208 0.99083 1.20898 0.95006 0.89337 0.93246 1.42209 1.67089 1.21660 1.06568 1.19167 1.29477 1.02366 0.85962 0.91278 1.24742 1.01254 0.98037 0.96927 1.69651 1.45041 1.19592 1.24001 0.86236 0.78129 0.78649 0.82995 1.21231 1.21628 1.21262 1.19638 0.87433 0.84102 0.76155 1.90716 1.13657 1.87029 1.49000 1.22173 1.02006 0.90549 1.05086 0.86138 1.22790 1.02017 1.00357 0.90769 1.22284 0.96652 0.93580 1.00312 1.22327 0.92672 0.94272 1.02747 1.22817 0.96557 0.97164 1.01435 1.22499 0.97610 0.94271 0.99153 0.92876 0.91137 0.90670 0.90570 0.89773 0.96024 0.96506 0.78271 0.93439 0.87938 0.87754 0.89405 0.91157 0.90219 0.91343 0.91388 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 10.01 59.85 0.60 1.43 16 2 N -0.61 -9.13 2.87 -181.57 -0.52 -9.65 16 3 C 0.11 1.95 5.52 -4.04 -0.02 1.93 16 4 C 0.14 3.16 6.58 -4.04 -0.03 3.13 16 5 N -0.73 -19.64 5.60 -59.91 -0.34 -19.97 16 6 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 7 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -29.04 13.06 55.49 0.72 -28.31 16 10 Si 0.91 23.02 29.55 -169.99 -5.02 18.00 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 C 0.54 8.51 7.46 -10.99 -0.08 8.42 16 15 O -0.53 -10.44 14.72 5.55 0.08 -10.36 16 16 C -0.18 -2.04 4.80 -91.99 -0.44 -2.48 16 17 H 0.12 1.10 7.26 -51.93 -0.38 0.72 16 18 C -0.12 -1.25 10.23 -26.95 -0.28 -1.53 16 19 C -0.13 -1.40 2.88 -154.80 -0.45 -1.84 16 20 C -0.08 -1.00 6.47 -26.13 -0.17 -1.16 16 21 C -0.14 -1.27 8.08 -25.81 -0.21 -1.48 16 22 C -0.10 -0.84 8.10 -26.14 -0.21 -1.05 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.60 6.64 -51.93 -0.34 0.25 16 25 H 0.07 0.78 8.07 -51.93 -0.42 0.37 16 26 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 27 H 0.08 1.69 7.42 -51.93 -0.39 1.30 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.38 10.67 7.67 -40.82 -0.31 10.36 16 31 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 32 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.17 8.05 -51.93 -0.42 0.75 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 323.49 15.07 4.87 4.87 Total: -1.00 -33.97 323.49 -8.18 -42.15 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.45 Total: 5.54 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.53 Total: -2.27 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.13 Total: -57.93 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.97 -8.18 -42.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664214034.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.486 kcal (2) G-P(sol) polarization free energy of solvation -33.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds