Wall clock time and date at job start Sun Mar 29 2020 23:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36939 * 119.99969 * 2 1 4 4 H 1.07998 * 119.99539 * 156.22826 * 3 2 1 5 5 C 1.38813 * 120.00027 * 336.24022 * 3 2 1 6 6 N 1.31618 * 120.00011 * 330.46158 * 5 3 2 7 7 Si 1.86800 * 120.00201 * 150.46384 * 5 3 2 8 8 H 1.48493 * 109.46953 * 269.99835 * 7 5 3 9 9 H 1.48504 * 109.47044 * 149.99385 * 7 5 3 10 10 H 1.48508 * 109.47133 * 29.99763 * 7 5 3 11 11 C 1.46498 * 120.00084 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47068 * 269.99640 * 11 2 1 13 13 N 1.46507 * 109.47152 * 180.02562 * 12 11 2 14 14 C 1.34772 * 119.99828 * 180.02562 * 13 12 11 15 15 O 1.21275 * 120.00485 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99761 * 180.02562 * 14 13 12 17 17 H 1.08998 * 115.52813 * 34.41457 * 16 14 13 18 18 C 1.52994 * 117.46016 * 179.91679 * 16 14 13 19 19 H 1.08998 * 119.29952 * 356.28700 * 18 16 14 20 20 C 1.54269 * 118.19853 * 201.21352 * 18 16 14 21 21 C 1.54816 * 104.21155 * 272.19548 * 20 18 16 22 22 C 1.54896 * 102.74566 * 37.92149 * 21 20 18 23 23 C 1.52996 * 117.45797 * 248.92070 * 16 14 13 24 24 H 1.09002 * 119.30108 * 3.70404 * 23 16 14 25 25 H 1.09000 * 109.47225 * 92.98419 * 1 2 3 26 26 H 1.09002 * 109.46733 * 212.98579 * 1 2 3 27 27 H 1.08997 * 109.47059 * 332.98259 * 1 2 3 28 28 H 0.97001 * 119.99645 * 354.58803 * 6 5 3 29 29 H 1.09001 * 109.46870 * 30.00244 * 11 2 1 30 30 H 1.09006 * 109.46914 * 149.99893 * 11 2 1 31 31 H 1.08993 * 109.47525 * 299.99951 * 12 11 2 32 32 H 1.09006 * 109.47046 * 60.00334 * 12 11 2 33 33 H 0.97003 * 119.99773 * 0.02562 * 13 12 11 34 34 H 1.09003 * 110.48286 * 30.89008 * 20 18 16 35 35 H 1.09004 * 110.48769 * 153.52652 * 20 18 16 36 36 H 1.09000 * 110.73959 * 279.61359 * 21 20 18 37 37 H 1.09008 * 110.93608 * 156.31443 * 21 20 18 38 38 H 1.09006 * 110.48271 * 203.40642 * 22 21 20 39 39 H 1.08999 * 110.60220 * 80.81763 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1609 1.2255 0.3770 5 6 1.5439 2.3371 -0.4844 6 7 0.6303 2.2528 -1.4281 7 14 2.0252 4.0060 0.2032 8 1 1.1553 4.3338 1.3611 9 1 1.8602 5.0411 -0.8489 10 1 3.4430 3.9697 0.6437 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4417 13 7 3.1857 -2.9794 1.4411 14 6 3.5223 -3.5636 2.6081 15 8 3.2180 -3.0397 3.6586 16 6 4.2769 -4.8682 2.6075 17 1 4.9938 -4.9958 1.7964 18 6 4.6310 -5.4790 3.9648 19 1 4.3865 -4.9326 4.8757 20 6 5.7883 -6.4972 4.0264 21 6 5.1122 -7.8591 3.7351 22 6 4.0614 -7.4954 2.6568 23 6 3.5333 -6.1135 3.0943 24 1 2.4801 -6.0346 3.3639 25 1 -0.3634 -0.0535 -1.0263 26 1 -0.3633 -0.8620 0.5595 27 1 -0.3633 0.9155 0.4668 28 1 0.4365 1.3964 -1.8403 29 1 1.6084 -2.0281 -0.5148 30 1 3.1500 -1.1381 -0.5144 31 1 3.0416 -0.9516 1.9558 32 1 1.5001 -1.8416 1.9555 33 1 3.4287 -3.3987 0.6009 34 1 6.5356 -6.2716 3.2656 35 1 6.2411 -6.5006 5.0179 36 1 4.6280 -8.2490 4.6305 37 1 5.8340 -8.5767 3.3446 38 1 3.2538 -8.2275 2.6489 39 1 4.5272 -7.4320 1.6734 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690932697.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:25 Heat of formation + Delta-G solvation = -1.775380 kcal Electronic energy + Delta-G solvation = -18179.939657 eV Core-core repulsion = 15316.415272 eV Total energy + Delta-G solvation = -2863.524385 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.41250 -38.41780 -36.24498 -34.29279 -32.07101 -31.26305 -28.52276 -28.27436 -25.96474 -24.49490 -22.64921 -20.94394 -20.69335 -19.98211 -19.80922 -17.58463 -17.18168 -15.97344 -15.32513 -15.13529 -14.90315 -14.08754 -14.00992 -13.59020 -13.43788 -13.35632 -13.10805 -12.76943 -12.42498 -11.74114 -11.55744 -11.43013 -11.24810 -11.14746 -11.02397 -10.78572 -10.64617 -10.47596 -10.29933 -10.05750 -10.03219 -9.63703 -9.49649 -8.75010 -8.35732 -7.00557 -6.10780 -3.24387 2.55097 3.24469 3.52863 3.54448 3.58996 3.71023 4.30775 4.45764 4.49607 4.61530 4.90930 4.96018 5.02506 5.13815 5.18263 5.26448 5.31683 5.43140 5.51871 5.54180 5.71003 5.73421 5.77000 5.78991 5.88266 6.02172 6.13737 6.15822 6.43663 6.57382 6.58434 6.76645 6.93246 7.07443 7.72657 7.96937 8.42317 8.54459 9.07224 9.81947 10.19161 11.17236 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.047533 B = 0.003561 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.928561 B = 7860.854363 C = 8166.839730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.133 3.867 2 N -0.600 5.600 3 C -0.365 4.365 4 H 0.059 0.941 5 C -0.018 4.018 6 N -0.909 5.909 7 Si 1.064 2.936 8 H -0.292 1.292 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.144 3.856 12 C 0.097 3.903 13 N -0.719 5.719 14 C 0.537 3.463 15 O -0.544 6.544 16 C -0.161 4.161 17 H 0.119 0.881 18 C -0.132 4.132 19 H 0.122 0.878 20 C -0.097 4.097 21 C -0.123 4.123 22 C -0.096 4.096 23 C -0.141 4.141 24 H 0.114 0.886 25 H 0.012 0.988 26 H 0.015 0.985 27 H 0.053 0.947 28 H 0.270 0.730 29 H 0.038 0.962 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.398 0.602 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.901 -19.940 6.518 22.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.323 5.323 3 C -0.493 4.493 4 H 0.077 0.923 5 C -0.221 4.221 6 N -0.549 5.549 7 Si 0.894 3.106 8 H -0.219 1.219 9 H -0.216 1.216 10 H -0.218 1.218 11 C 0.016 3.984 12 C -0.029 4.029 13 N -0.370 5.370 14 C 0.323 3.677 15 O -0.421 6.421 16 C -0.182 4.182 17 H 0.137 0.863 18 C -0.151 4.151 19 H 0.140 0.860 20 C -0.134 4.134 21 C -0.161 4.161 22 C -0.133 4.133 23 C -0.159 4.159 24 H 0.132 0.868 25 H 0.030 0.970 26 H 0.034 0.966 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.231 0.769 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.311 -17.874 7.188 20.606 hybrid contribution 0.432 -1.706 -0.377 1.799 sum 7.743 -19.580 6.811 22.129 Atomic orbital electron populations 1.21004 0.83681 0.98813 0.97689 1.43824 1.01092 1.01093 1.86328 1.19964 1.01013 0.86959 1.41389 0.92269 1.25798 0.98729 1.02066 0.95536 1.70766 1.35794 1.28313 1.19985 0.83546 0.75371 0.75757 0.75970 1.21941 1.21641 1.21775 1.20829 0.96735 0.88859 0.91956 1.22332 0.95625 0.83139 1.01784 1.45996 1.58017 1.24986 1.07987 1.19567 0.79157 0.85015 0.83982 1.90692 1.54913 1.65029 1.31490 1.22394 1.03153 0.92425 1.00211 0.86320 1.23239 0.97164 1.00319 0.94344 0.86046 1.21987 0.96246 0.93013 1.02168 1.22686 0.97601 0.96947 0.98842 1.22001 0.98390 0.94134 0.98798 1.23231 0.97958 0.90861 1.03874 0.86838 0.96957 0.96601 0.92827 0.91891 0.94331 0.92780 0.91448 0.92367 0.76914 0.91216 0.90873 0.91173 0.91197 0.90922 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.21 8.98 59.85 0.54 3.75 16 2 N -0.60 -15.13 2.80 -181.12 -0.51 -15.64 16 3 C -0.36 -10.27 9.46 -15.06 -0.14 -10.42 16 4 H 0.06 1.68 7.98 -52.49 -0.42 1.26 16 5 C -0.02 -0.52 4.61 -17.43 -0.08 -0.60 16 6 N -0.91 -27.37 12.74 55.49 0.71 -26.66 16 7 Si 1.06 25.65 30.01 -169.99 -5.10 20.55 16 8 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 C 0.14 2.92 5.80 -4.05 -0.02 2.89 16 12 C 0.10 1.84 6.00 -4.04 -0.02 1.82 16 13 N -0.72 -10.85 5.56 -60.29 -0.33 -11.18 16 14 C 0.54 8.46 7.61 -10.98 -0.08 8.38 16 15 O -0.54 -10.89 16.32 5.56 0.09 -10.80 16 16 C -0.16 -1.84 5.74 -91.77 -0.53 -2.37 16 17 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 18 C -0.13 -1.43 6.39 -89.54 -0.57 -2.00 16 19 H 0.12 1.53 7.78 -51.93 -0.40 1.12 16 20 C -0.10 -0.77 6.62 -25.11 -0.17 -0.94 16 21 C -0.12 -0.84 6.90 -24.77 -0.17 -1.01 16 22 C -0.10 -0.72 6.63 -25.07 -0.17 -0.88 16 23 C -0.14 -1.42 6.64 -89.54 -0.59 -2.01 16 24 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 25 H 0.01 0.30 6.87 -51.93 -0.36 -0.05 16 26 H 0.02 0.33 8.09 -51.93 -0.42 -0.09 16 27 H 0.05 1.39 7.27 -51.93 -0.38 1.02 16 28 H 0.27 8.14 6.37 -40.82 -0.26 7.88 16 29 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 30 H 0.05 1.09 8.04 -51.93 -0.42 0.67 16 31 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.40 4.71 8.47 -40.82 -0.35 4.37 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 320.49 15.07 4.83 4.83 Total: -1.00 -32.85 320.49 -8.77 -41.62 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.44 Total: 0.68 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -2.01 Total: -3.40 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.13 Total: -53.48 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.10 Total: 20.55 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.85 -8.77 -41.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690932697.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.846 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds