Wall clock time and date at job start Sun Mar 29 2020 23:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 119.99824 * 2 1 4 4 C 1.53000 * 109.47008 * 269.99762 * 3 2 1 5 5 C 1.52999 * 109.47449 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.47665 * 179.97438 * 5 4 3 7 7 C 1.36938 * 120.00328 * 179.97438 * 6 5 4 8 8 H 1.07996 * 119.99690 * 359.97438 * 7 6 5 9 9 C 1.38814 * 119.99996 * 180.02562 * 7 6 5 10 10 N 1.31612 * 119.99676 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00096 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.47153 * 90.00052 * 11 9 7 13 13 H 1.48496 * 109.47471 * 210.00334 * 11 9 7 14 14 H 1.48502 * 109.47145 * 330.00370 * 11 9 7 15 15 C 1.34772 * 120.00058 * 179.97438 * 2 1 3 16 16 O 1.21616 * 120.00216 * 180.34117 * 15 2 1 17 17 C 1.47101 * 119.99966 * 0.34115 * 15 2 1 18 18 C 1.32613 * 124.62129 * 172.51227 * 17 15 2 19 19 C 1.51108 * 110.76007 * 180.19493 * 18 17 15 20 20 C 1.54730 * 104.76375 * 343.05855 * 19 18 17 21 21 C 1.51111 * 124.62317 * 352.47476 * 17 15 2 22 22 H 1.09008 * 109.46959 * 263.29439 * 1 2 3 23 23 H 1.08994 * 109.46837 * 23.28930 * 1 2 3 24 24 H 1.08999 * 109.47037 * 143.29293 * 1 2 3 25 25 H 1.08997 * 109.47548 * 29.99612 * 3 2 1 26 26 H 1.09005 * 109.47117 * 150.00042 * 3 2 1 27 27 H 1.08999 * 109.47347 * 300.00357 * 4 3 2 28 28 H 1.08997 * 109.47201 * 60.00070 * 4 3 2 29 29 H 1.08999 * 109.46971 * 300.00384 * 5 4 3 30 30 H 1.09005 * 109.47064 * 60.00043 * 5 4 3 31 31 H 0.97002 * 119.99898 * 0.02562 * 6 5 4 32 32 H 0.97002 * 119.99801 * 179.97438 * 10 9 7 33 33 H 1.08008 * 124.62007 * 359.92825 * 18 17 15 34 34 H 1.09003 * 110.36616 * 102.01382 * 19 18 17 35 35 H 1.08999 * 110.36819 * 224.33260 * 19 18 17 36 36 H 1.08995 * 111.18490 * 267.18322 * 20 19 18 37 37 H 1.08998 * 110.85108 * 143.33340 * 20 19 18 38 38 H 1.08998 * 110.36483 * 315.47688 * 21 17 15 39 39 H 1.09007 * 110.36224 * 77.68230 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2180 3.0351 -1.4426 6 7 3.4628 3.4576 -2.8238 7 6 4.1360 4.6236 -3.0741 8 1 4.4861 5.2317 -2.2532 9 6 4.3674 5.0242 -4.3829 10 7 5.0149 6.1445 -4.6233 11 14 3.7611 3.9726 -5.8026 12 1 2.3876 4.3935 -6.1792 13 1 4.6674 4.1422 -6.9666 14 1 3.7461 2.5459 -5.3907 15 6 2.1389 -1.1672 0.0005 16 8 3.3551 -1.1672 0.0068 17 6 1.4034 -2.4411 -0.0065 18 6 1.9645 -3.6342 -0.1488 19 6 0.9194 -4.7251 -0.1146 20 6 -0.3305 -4.0544 0.5035 21 6 -0.0943 -2.5687 0.1483 22 1 -0.3633 -0.1200 1.0207 23 1 -0.3633 0.9439 -0.4063 24 1 -0.3633 -0.8239 -0.6143 25 1 1.6084 2.0284 0.5137 26 1 3.1499 1.1384 0.5138 27 1 3.0416 0.9507 -1.9563 28 1 1.5001 1.8406 -1.9564 29 1 2.6293 3.7949 -0.9287 30 1 4.1705 2.9043 -0.9289 31 1 3.1473 2.9119 -3.5611 32 1 5.1769 6.4243 -5.5379 33 1 3.0236 -3.8030 -0.2765 34 1 0.7044 -5.0763 -1.1238 35 1 1.2541 -5.5516 0.5123 36 1 -0.3608 -4.1974 1.5836 37 1 -1.2419 -4.4272 0.0362 38 1 -0.4486 -1.9251 0.9536 39 1 -0.5951 -2.3161 -0.7864 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699499433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:44 Heat of formation + Delta-G solvation = 5.389226 kcal Electronic energy + Delta-G solvation = -18273.831855 eV Core-core repulsion = 15410.618151 eV Total energy + Delta-G solvation = -2863.213704 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.42304 -38.04804 -36.25680 -34.98731 -32.34322 -30.62705 -29.57759 -28.80920 -26.91011 -25.49467 -22.74479 -21.52348 -21.10143 -20.52652 -18.56256 -17.50469 -16.83867 -16.39829 -16.06915 -15.13210 -14.95889 -14.44881 -14.20424 -13.60181 -13.53113 -13.24661 -12.91257 -12.72387 -12.49978 -12.36103 -12.13536 -12.02602 -11.92514 -11.57486 -11.15388 -10.99872 -10.88569 -10.76535 -10.46559 -10.10750 -9.86050 -9.55433 -9.27594 -8.85090 -8.61787 -7.18529 -5.72854 -3.07900 1.20041 2.94375 3.18861 3.40750 3.44574 3.48070 4.11641 4.20987 4.56533 4.62984 4.63315 4.91786 4.93460 5.09561 5.14209 5.24076 5.30135 5.31450 5.40965 5.44346 5.55774 5.56513 5.60142 5.63858 5.76763 5.84212 5.93417 6.01399 6.09803 6.26811 6.29632 6.52031 6.79484 6.82134 7.32994 8.03922 8.14314 8.46581 9.25733 9.98384 10.18748 11.45770 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.034936 B = 0.003867 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.282006 B = 7238.427410 C = 7455.844983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.610 5.610 3 C 0.119 3.881 4 C -0.143 4.143 5 C 0.160 3.840 6 N -0.757 5.757 7 C -0.243 4.243 8 H 0.091 0.909 9 C 0.003 3.997 10 N -0.936 5.936 11 Si 0.885 3.115 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.277 1.277 15 C 0.562 3.438 16 O -0.537 6.537 17 C -0.192 4.192 18 C -0.077 4.077 19 C -0.107 4.107 20 C -0.128 4.128 21 C -0.095 4.095 22 H 0.057 0.943 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.027 0.973 30 H 0.029 0.971 31 H 0.360 0.640 32 H 0.259 0.741 33 H 0.138 0.862 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.038 -21.741 11.846 28.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.342 5.342 3 C -0.004 4.004 4 C -0.182 4.182 5 C 0.033 3.967 6 N -0.402 5.402 7 C -0.373 4.373 8 H 0.108 0.892 9 C -0.193 4.193 10 N -0.584 5.584 11 Si 0.715 3.285 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.204 1.204 15 C 0.351 3.649 16 O -0.415 6.415 17 C -0.195 4.195 18 C -0.097 4.097 19 C -0.144 4.144 20 C -0.165 4.165 21 C -0.132 4.132 22 H 0.075 0.925 23 H 0.092 0.908 24 H 0.105 0.895 25 H 0.097 0.903 26 H 0.104 0.896 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.193 0.807 32 H 0.069 0.931 33 H 0.155 0.845 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.286 -21.493 11.904 28.421 hybrid contribution -0.391 -0.526 -1.198 1.365 sum -14.677 -22.019 10.706 28.546 Atomic orbital electron populations 1.22543 0.79814 1.04287 1.01791 1.47740 1.07008 1.06187 1.73274 1.21495 0.97726 0.83475 0.97705 1.22111 1.00949 0.98958 0.96172 1.20521 0.96646 0.91930 0.87634 1.42710 1.69645 1.26255 1.01639 1.19090 1.27744 0.96811 0.93636 0.89165 1.24673 1.00504 0.97214 0.96902 1.69703 1.46172 1.23068 1.19437 0.86526 0.78410 0.80353 0.83169 1.21089 1.21665 1.20364 1.18049 0.86917 0.83507 0.76412 1.90816 1.13405 1.87348 1.49922 1.21830 0.96379 0.93520 1.07782 1.24054 0.99933 0.93530 0.92164 1.21509 0.93708 0.97310 1.01877 1.22539 0.97845 0.94926 1.01194 1.21776 0.92214 0.97176 1.02012 0.92470 0.90850 0.89467 0.90271 0.89575 0.91669 0.92060 0.95488 0.95355 0.80724 0.93087 0.84468 0.89642 0.90288 0.90820 0.90547 0.89942 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.48 8.91 59.85 0.53 1.01 16 2 N -0.61 -7.60 2.87 -182.98 -0.53 -8.13 16 3 C 0.12 1.64 5.38 -4.04 -0.02 1.62 16 4 C -0.14 -2.39 5.65 -26.73 -0.15 -2.54 16 5 C 0.16 3.28 6.26 -4.04 -0.03 3.26 16 6 N -0.76 -19.19 5.41 -59.91 -0.32 -19.52 16 7 C -0.24 -7.21 10.47 -15.06 -0.16 -7.37 16 8 H 0.09 2.84 8.06 -52.49 -0.42 2.42 16 9 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 10 N -0.94 -30.26 13.97 55.49 0.78 -29.49 16 11 Si 0.89 22.94 27.73 -169.99 -4.71 18.23 16 12 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 14 H -0.28 -6.88 6.52 56.52 0.37 -6.51 16 15 C 0.56 8.03 7.65 -12.67 -0.10 7.94 16 16 O -0.54 -9.89 16.36 5.26 0.09 -9.81 16 17 C -0.19 -2.05 5.94 -102.73 -0.61 -2.66 16 18 C -0.08 -0.74 10.43 -36.01 -0.38 -1.12 16 19 C -0.11 -0.68 6.81 -26.77 -0.18 -0.87 16 20 C -0.13 -0.71 7.17 -24.99 -0.18 -0.89 16 21 C -0.10 -0.66 4.45 -26.85 -0.12 -0.78 16 22 H 0.06 0.38 7.06 -51.92 -0.37 0.01 16 23 H 0.07 0.57 8.02 -51.93 -0.42 0.16 16 24 H 0.09 0.61 4.16 -51.93 -0.22 0.39 16 25 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 26 H 0.09 1.32 7.42 -51.93 -0.39 0.93 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.36 8.93 5.53 -40.82 -0.23 8.71 16 32 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 33 H 0.14 1.40 8.04 -52.48 -0.42 0.98 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.50 5.88 -51.93 -0.31 0.20 16 39 H 0.08 0.52 6.60 -51.93 -0.34 0.17 16 LS Contribution 313.99 15.07 4.73 4.73 Total: -1.00 -35.75 313.99 -7.53 -43.27 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.07 Total: 3.13 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -1.48 Total: -2.42 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.07 Total: -57.14 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.71 Total: 18.23 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.75 -7.53 -43.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699499433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.661 kcal (2) G-P(sol) polarization free energy of solvation -35.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds