Wall clock time and date at job start Sun Mar 29 2020 23:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36933 * 120.00744 * 2 1 4 4 H 1.07997 * 120.00731 * 202.35114 * 3 2 1 5 5 C 1.38819 * 119.99418 * 22.34419 * 3 2 1 6 6 N 1.31621 * 119.99912 * 11.35954 * 5 3 2 7 7 Si 1.86802 * 119.99786 * 191.35495 * 5 3 2 8 8 H 1.48495 * 109.47213 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.46933 * 120.00164 * 7 5 3 10 10 H 1.48498 * 109.46959 * 240.00117 * 7 5 3 11 11 C 1.46506 * 119.99669 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47023 * 269.99822 * 11 2 1 13 13 N 1.46497 * 109.46945 * 180.02562 * 12 11 2 14 14 C 1.34774 * 120.00181 * 179.97438 * 13 12 11 15 15 O 1.21288 * 119.99932 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00380 * 179.97438 * 14 13 12 17 17 H 1.08997 * 109.63770 * 60.00031 * 16 14 13 18 18 C 1.53024 * 109.64363 * 299.58205 * 16 14 13 19 19 C 1.50538 * 109.89104 * 190.83991 * 18 16 14 20 20 C 1.29438 * 124.16036 * 16.99806 * 19 18 16 21 21 C 1.50061 * 124.07839 * 359.59111 * 20 19 18 22 22 C 1.53024 * 110.14535 * 17.13115 * 21 20 19 23 23 H 1.09001 * 109.46975 * 274.20738 * 1 2 3 24 24 H 1.08999 * 109.47049 * 34.20252 * 1 2 3 25 25 H 1.09002 * 109.47484 * 154.20819 * 1 2 3 26 26 H 0.97005 * 119.99597 * 180.02562 * 6 5 3 27 27 H 1.09003 * 109.46977 * 149.99836 * 11 2 1 28 28 H 1.08995 * 109.47141 * 29.99874 * 11 2 1 29 29 H 1.08993 * 109.47220 * 60.00231 * 12 11 2 30 30 H 1.08998 * 109.46964 * 299.99534 * 12 11 2 31 31 H 0.97006 * 120.00463 * 359.97438 * 13 12 11 32 32 H 1.09007 * 109.35884 * 310.87630 * 18 16 14 33 33 H 1.09003 * 109.35908 * 70.45322 * 18 16 14 34 34 H 1.08005 * 117.87850 * 197.04082 * 19 18 16 35 35 H 1.08005 * 117.96025 * 179.57240 * 20 19 18 36 36 H 1.09002 * 109.36212 * 256.92338 * 21 20 19 37 37 H 1.09002 * 109.25154 * 137.26777 * 21 20 19 38 38 H 1.09003 * 109.64486 * 190.87917 * 22 21 20 39 39 H 1.09001 * 109.64673 * 70.24598 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1689 1.2209 -0.3556 5 6 1.5339 2.3429 0.4571 6 7 0.3843 2.2690 1.0938 7 14 2.3368 4.0047 0.1685 8 1 3.6144 3.8166 -0.5645 9 1 1.4268 4.8614 -0.6335 10 1 2.6076 4.6570 1.4748 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7111 1.4417 13 7 3.1854 -2.9795 1.4411 14 6 3.5229 -3.5634 2.6080 15 8 3.2194 -3.0389 3.6587 16 6 4.2764 -4.8685 2.6075 17 1 5.2292 -4.7412 2.0938 18 6 3.4478 -5.9406 1.8962 19 6 4.0636 -7.2959 2.1199 20 6 4.9282 -7.5574 3.0469 21 6 5.4455 -6.5432 4.0245 22 6 4.5256 -5.3207 4.0519 23 1 -0.3633 0.0754 1.0249 24 1 -0.3633 0.8499 -0.5777 25 1 -0.3634 -0.9253 -0.4471 26 1 -0.0462 3.0776 1.4128 27 1 3.1499 -1.1383 -0.5144 28 1 1.6083 -2.0282 -0.5147 29 1 1.5001 -1.8416 1.9555 30 1 3.0416 -0.9517 1.9558 31 1 3.4278 -3.3993 0.6009 32 1 2.4326 -5.9352 2.2933 33 1 3.4170 -5.7240 0.8284 34 1 3.7649 -8.1007 1.4643 35 1 5.3004 -8.5686 3.1217 36 1 6.4481 -6.2344 3.7283 37 1 5.4838 -6.9890 5.0184 38 1 5.0027 -4.5155 4.6107 39 1 3.5783 -5.5854 4.5216 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713445196.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:13 Heat of formation + Delta-G solvation = -14.618471 kcal Electronic energy + Delta-G solvation = -18419.056005 eV Core-core repulsion = 15554.974702 eV Total energy + Delta-G solvation = -2864.081303 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.97499 -37.66725 -35.99084 -34.11027 -31.72307 -31.11741 -30.80779 -27.97712 -25.86899 -24.26704 -23.35411 -22.30571 -20.62998 -19.86796 -18.07454 -17.20769 -16.71745 -15.90877 -15.35831 -14.88389 -14.71933 -14.24598 -13.85020 -13.69641 -13.40726 -13.23124 -12.99357 -12.57551 -12.42137 -12.20777 -12.10515 -11.20702 -11.09993 -10.93679 -10.86050 -10.80750 -10.59399 -10.48786 -10.26046 -9.97194 -9.89415 -9.41863 -9.21077 -8.60967 -8.54214 -6.81775 -5.74233 -3.21436 2.08118 2.93483 3.37604 3.44466 3.46932 3.53147 4.47424 4.51367 4.53431 4.76348 5.05802 5.10490 5.14500 5.30386 5.37242 5.41163 5.49795 5.64630 5.69807 5.75320 5.79355 5.89243 6.01782 6.08410 6.20476 6.28771 6.44099 6.70719 6.72820 6.73837 6.77198 7.01036 7.36958 7.72255 7.80521 7.86674 8.37181 8.57243 9.21303 9.83394 10.31506 11.30873 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.041963 B = 0.003888 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.090323 B = 7199.221617 C = 7450.545499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.597 5.597 3 C -0.260 4.260 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.725 5.725 14 C 0.509 3.491 15 O -0.542 6.542 16 C -0.108 4.108 17 H 0.096 0.904 18 C -0.082 4.082 19 C -0.153 4.153 20 C -0.156 4.156 21 C -0.093 4.093 22 C -0.100 4.100 23 H 0.029 0.971 24 H 0.047 0.953 25 H -0.002 1.002 26 H 0.253 0.747 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.394 0.606 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.863 -18.636 0.347 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.320 5.320 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.550 5.550 7 Si 0.737 3.263 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.216 1.216 11 C 0.016 3.984 12 C -0.032 4.032 13 N -0.376 5.376 14 C 0.294 3.706 15 O -0.419 6.419 16 C -0.129 4.129 17 H 0.114 0.886 18 C -0.119 4.119 19 C -0.171 4.171 20 C -0.174 4.174 21 C -0.130 4.130 22 C -0.138 4.138 23 H 0.048 0.952 24 H 0.066 0.934 25 H 0.016 0.984 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.227 0.773 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.493 -18.065 1.143 19.591 hybrid contribution 0.455 0.691 -0.415 0.925 sum 7.947 -17.374 0.728 19.120 Atomic orbital electron populations 1.20845 0.82164 0.95726 0.99472 1.43932 1.02068 1.00369 1.85591 1.19273 0.98149 0.85235 1.36296 0.91163 1.25073 0.97653 0.98698 0.98123 1.70084 1.17793 1.27110 1.40042 0.86149 0.78638 0.84074 0.77466 1.20282 1.21562 1.21633 1.20992 0.96306 0.88895 0.92242 1.22497 0.95717 0.82961 1.01995 1.46222 1.58215 1.25234 1.07908 1.20576 0.79731 0.86129 0.84120 1.90706 1.54611 1.65225 1.31382 1.21414 0.99765 0.92655 0.99111 0.88588 1.20507 0.99208 0.91602 1.00574 1.22092 0.98627 0.97524 0.98903 1.22088 0.98939 0.99399 0.97015 1.20510 0.99197 0.94688 0.98577 1.21417 1.00490 0.97226 0.94642 0.95244 0.93427 0.98396 0.93684 0.93371 0.94022 0.92289 0.91428 0.77281 0.90276 0.90381 0.87723 0.88004 0.90800 0.90820 0.90604 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.03 9.01 59.85 0.54 4.57 16 2 N -0.60 -15.03 2.93 -181.12 -0.53 -15.56 16 3 C -0.26 -7.17 9.67 -15.06 -0.15 -7.32 16 4 H 0.07 1.89 7.84 -52.49 -0.41 1.47 16 5 C 0.00 0.09 5.13 -17.43 -0.09 0.00 16 6 N -0.91 -26.70 10.59 55.49 0.59 -26.11 16 7 Si 0.91 22.01 29.57 -169.99 -5.03 16.98 16 8 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 11 C 0.14 2.86 5.82 -4.04 -0.02 2.83 16 12 C 0.09 1.85 6.00 -4.04 -0.02 1.83 16 13 N -0.72 -10.97 5.47 -60.30 -0.33 -11.30 16 14 C 0.51 8.06 7.13 -10.98 -0.08 7.98 16 15 O -0.54 -11.15 15.90 5.55 0.09 -11.06 16 16 C -0.11 -1.23 2.57 -91.55 -0.24 -1.46 16 17 H 0.10 0.96 8.12 -51.93 -0.42 0.53 16 18 C -0.08 -0.78 5.32 -27.95 -0.15 -0.93 16 19 C -0.15 -1.32 9.81 -35.67 -0.35 -1.67 16 20 C -0.16 -1.31 9.80 -35.90 -0.35 -1.66 16 21 C -0.09 -0.80 6.11 -28.18 -0.17 -0.98 16 22 C -0.10 -1.13 4.70 -26.51 -0.12 -1.26 16 23 H 0.03 0.79 7.42 -51.93 -0.39 0.41 16 24 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16 25 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 26 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 28 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.39 4.56 8.17 -40.82 -0.33 4.23 16 32 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 33 H 0.08 0.62 7.91 -51.93 -0.41 0.21 16 34 H 0.10 0.75 8.06 -52.48 -0.42 0.33 16 35 H 0.10 0.71 8.06 -52.48 -0.42 0.29 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.94 7.90 -51.93 -0.41 0.53 16 39 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 LS Contribution 318.35 15.07 4.80 4.80 Total: -1.00 -32.35 318.35 -8.11 -40.46 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.49 Total: -0.17 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -1.20 Total: 1.95 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.27 Total: -52.96 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.35 -8.11 -40.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713445196.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.844 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds