Wall clock time and date at job start Sun Mar 29 2020 23:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36933 * 120.00744 * 2 1 4 4 H 1.07997 * 120.00731 * 202.35114 * 3 2 1 5 5 C 1.38819 * 119.99418 * 22.34419 * 3 2 1 6 6 N 1.31621 * 119.99912 * 11.35954 * 5 3 2 7 7 Si 1.86802 * 119.99786 * 191.35495 * 5 3 2 8 8 H 1.48495 * 109.47213 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.46933 * 120.00164 * 7 5 3 10 10 H 1.48498 * 109.46959 * 240.00117 * 7 5 3 11 11 C 1.46506 * 119.99669 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47023 * 269.99822 * 11 2 1 13 13 N 1.46497 * 109.46945 * 180.02562 * 12 11 2 14 14 C 1.34774 * 120.00181 * 179.97438 * 13 12 11 15 15 O 1.21288 * 119.99932 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00380 * 179.97438 * 14 13 12 17 17 H 1.08997 * 109.63770 * 60.00031 * 16 14 13 18 18 C 1.53024 * 109.64363 * 299.58205 * 16 14 13 19 19 C 1.50538 * 109.89104 * 190.83991 * 18 16 14 20 20 C 1.29438 * 124.16036 * 16.99806 * 19 18 16 21 21 C 1.50061 * 124.07839 * 359.59111 * 20 19 18 22 22 C 1.53024 * 110.14535 * 17.13115 * 21 20 19 23 23 H 1.09001 * 109.46975 * 274.20738 * 1 2 3 24 24 H 1.08999 * 109.47049 * 34.20252 * 1 2 3 25 25 H 1.09002 * 109.47484 * 154.20819 * 1 2 3 26 26 H 0.97005 * 119.99597 * 180.02562 * 6 5 3 27 27 H 1.09003 * 109.46977 * 149.99836 * 11 2 1 28 28 H 1.08995 * 109.47141 * 29.99874 * 11 2 1 29 29 H 1.08993 * 109.47220 * 60.00231 * 12 11 2 30 30 H 1.08998 * 109.46964 * 299.99534 * 12 11 2 31 31 H 0.97006 * 120.00463 * 359.97438 * 13 12 11 32 32 H 1.09007 * 109.35884 * 310.87630 * 18 16 14 33 33 H 1.09003 * 109.35908 * 70.45322 * 18 16 14 34 34 H 1.08005 * 117.87850 * 197.04082 * 19 18 16 35 35 H 1.08005 * 117.96025 * 179.57240 * 20 19 18 36 36 H 1.09002 * 109.36212 * 256.92338 * 21 20 19 37 37 H 1.09002 * 109.25154 * 137.26777 * 21 20 19 38 38 H 1.09003 * 109.64486 * 190.87917 * 22 21 20 39 39 H 1.09001 * 109.64673 * 70.24598 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1689 1.2209 -0.3556 5 6 1.5339 2.3429 0.4571 6 7 0.3843 2.2690 1.0938 7 14 2.3368 4.0047 0.1685 8 1 3.6144 3.8166 -0.5645 9 1 1.4268 4.8614 -0.6335 10 1 2.6076 4.6570 1.4748 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7111 1.4417 13 7 3.1854 -2.9795 1.4411 14 6 3.5229 -3.5634 2.6080 15 8 3.2194 -3.0389 3.6587 16 6 4.2764 -4.8685 2.6075 17 1 5.2292 -4.7412 2.0938 18 6 3.4478 -5.9406 1.8962 19 6 4.0636 -7.2959 2.1199 20 6 4.9282 -7.5574 3.0469 21 6 5.4455 -6.5432 4.0245 22 6 4.5256 -5.3207 4.0519 23 1 -0.3633 0.0754 1.0249 24 1 -0.3633 0.8499 -0.5777 25 1 -0.3634 -0.9253 -0.4471 26 1 -0.0462 3.0776 1.4128 27 1 3.1499 -1.1383 -0.5144 28 1 1.6083 -2.0282 -0.5147 29 1 1.5001 -1.8416 1.9555 30 1 3.0416 -0.9517 1.9558 31 1 3.4278 -3.3993 0.6009 32 1 2.4326 -5.9352 2.2933 33 1 3.4170 -5.7240 0.8284 34 1 3.7649 -8.1007 1.4643 35 1 5.3004 -8.5686 3.1217 36 1 6.4481 -6.2344 3.7283 37 1 5.4838 -6.9890 5.0184 38 1 5.0027 -4.5155 4.6107 39 1 3.5783 -5.5854 4.5216 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713445196.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:13 Heat of formation + Delta-G solvation = -35.600660 kcal Electronic energy + Delta-G solvation = -18419.965861 eV Core-core repulsion = 15554.974702 eV Total energy + Delta-G solvation = -2864.991159 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.17166 -38.67490 -37.77888 -35.73423 -33.37563 -32.28171 -31.65396 -29.60593 -27.93861 -25.60651 -24.44533 -23.48578 -22.38243 -21.17064 -18.84316 -18.82029 -18.24210 -17.17356 -16.70132 -16.49344 -16.25250 -15.54236 -15.17121 -15.09480 -14.63535 -14.39601 -14.32055 -14.03766 -13.85305 -13.24195 -13.11647 -13.06833 -12.82272 -12.65050 -12.49285 -12.06649 -12.03216 -11.96425 -11.76042 -11.69404 -11.30827 -10.73941 -10.67396 -10.06697 -9.84323 -8.87530 -7.86225 -5.35891 1.45649 1.46061 1.46677 1.57273 1.65097 2.20217 2.51832 3.29528 3.56191 3.72399 3.81480 3.90420 4.22480 4.23160 4.30431 4.37125 4.41849 4.49074 4.62967 4.65392 4.76336 4.83590 4.94780 5.04639 5.05892 5.07267 5.17122 5.27957 5.31358 5.34660 5.49135 5.62197 5.71098 5.80854 6.09615 6.29899 6.62132 7.11556 7.31587 7.82425 8.24710 9.17712 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.041963 B = 0.003888 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.090323 B = 7199.221617 C = 7450.545499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.616 5.616 3 C -0.267 4.267 4 H 0.077 0.923 5 C -0.056 4.056 6 N -0.940 5.940 7 Si 0.971 3.029 8 H -0.262 1.262 9 H -0.288 1.288 10 H -0.296 1.296 11 C 0.147 3.853 12 C 0.115 3.885 13 N -0.708 5.708 14 C 0.506 3.494 15 O -0.596 6.596 16 C -0.097 4.097 17 H 0.120 0.880 18 C -0.080 4.080 19 C -0.159 4.159 20 C -0.159 4.159 21 C -0.089 4.089 22 C -0.102 4.102 23 H -0.003 1.003 24 H 0.022 0.978 25 H 0.036 0.964 26 H 0.248 0.752 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.031 0.969 30 H 0.027 0.973 31 H 0.417 0.583 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.057 0.943 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.584 -20.745 -1.320 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.338 5.338 3 C -0.397 4.397 4 H 0.095 0.905 5 C -0.250 4.250 6 N -0.587 5.587 7 Si 0.799 3.201 8 H -0.186 1.186 9 H -0.215 1.215 10 H -0.223 1.223 11 C 0.020 3.980 12 C -0.012 4.012 13 N -0.361 5.361 14 C 0.293 3.707 15 O -0.477 6.477 16 C -0.118 4.118 17 H 0.138 0.862 18 C -0.117 4.117 19 C -0.177 4.177 20 C -0.177 4.177 21 C -0.125 4.125 22 C -0.140 4.140 23 H 0.015 0.985 24 H 0.041 0.959 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.254 0.746 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.252 -20.233 -0.575 22.256 hybrid contribution -0.060 1.264 0.129 1.272 sum 9.192 -18.969 -0.446 21.083 Atomic orbital electron populations 1.20599 0.82457 0.96518 0.97428 1.44189 1.02377 1.01653 1.85631 1.19657 0.98399 0.86421 1.35227 0.90516 1.25879 0.98426 1.02210 0.98529 1.70263 1.19329 1.27490 1.41579 0.85141 0.78265 0.79755 0.76920 1.18632 1.21515 1.22341 1.21146 0.97170 0.87567 0.92143 1.21901 0.94106 0.84020 1.01211 1.45934 1.57379 1.23614 1.09167 1.21467 0.78921 0.87151 0.83124 1.90688 1.56713 1.66902 1.33366 1.21424 1.00257 0.90334 0.99783 0.86222 1.20530 0.98099 0.91635 1.01441 1.22174 0.98771 0.97209 0.99558 1.22253 0.98913 1.00085 0.96444 1.20499 0.98956 0.93491 0.99599 1.21413 1.00224 0.98075 0.94337 0.98455 0.95921 0.94509 0.94296 0.91643 0.90590 0.95092 0.95464 0.74618 0.91673 0.88226 0.85861 0.86086 0.89580 0.89858 0.92450 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.72 9.01 127.77 1.15 9.87 16 2 N -0.62 -30.76 2.93 -726.93 -2.13 -32.88 16 3 C -0.27 -14.69 9.67 84.04 0.81 -13.88 16 4 H 0.08 4.04 7.84 -2.91 -0.02 4.02 16 5 C -0.06 -3.16 5.13 84.86 0.44 -2.72 16 6 N -0.94 -56.99 10.59 21.65 0.23 -56.76 16 7 Si 0.97 45.65 29.57 68.60 2.03 47.68 16 8 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 9 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 10 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 11 C 0.15 5.55 5.82 86.38 0.50 6.06 16 12 C 0.11 4.54 6.00 86.38 0.52 5.06 16 13 N -0.71 -20.51 5.47 -463.07 -2.53 -23.04 16 14 C 0.51 15.82 7.13 87.66 0.63 16.44 16 15 O -0.60 -25.39 15.90 -3.05 -0.05 -25.44 16 16 C -0.10 -2.03 2.57 -11.40 -0.03 -2.06 16 17 H 0.12 2.00 8.12 -2.39 -0.02 1.98 16 18 C -0.08 -1.31 5.32 29.81 0.16 -1.15 16 19 C -0.16 -2.20 9.81 27.19 0.27 -1.93 16 20 C -0.16 -2.15 9.80 27.04 0.27 -1.88 16 21 C -0.09 -1.33 6.11 29.66 0.18 -1.15 16 22 C -0.10 -2.26 4.70 30.74 0.14 -2.11 16 23 H 0.00 -0.16 7.42 -2.39 -0.02 -0.18 16 24 H 0.02 1.20 7.19 -2.39 -0.02 1.18 16 25 H 0.04 1.51 7.84 -2.39 -0.02 1.49 16 26 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 27 H 0.07 2.28 8.03 -2.39 -0.02 2.26 16 28 H 0.08 2.39 7.86 -2.39 -0.02 2.37 16 29 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.42 8.35 8.17 -92.70 -0.76 7.59 16 32 H 0.06 1.27 8.10 -2.38 -0.02 1.25 16 33 H 0.10 1.20 7.91 -2.39 -0.02 1.18 16 34 H 0.12 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.12 1.21 8.06 -2.91 -0.02 1.19 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 1.45 7.90 -2.39 -0.02 1.44 16 39 H 0.05 1.32 8.13 -2.39 -0.02 1.30 16 Total: -1.00 -72.72 318.35 2.84 -69.88 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.26 Total: 10.02 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 5.03 Total: 10.54 kcal Atomic # 7 Polarization: -108.26 SS G_CDS: -4.43 Total: -112.69 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.05 Total: -25.44 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -72.72 2.84 -69.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713445196.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.280 kcal (2) G-P(sol) polarization free energy of solvation -72.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds