Wall clock time and date at job start Sun Mar 29 2020 23:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36942 * 119.99656 * 2 1 4 4 H 1.08003 * 120.00068 * 203.04432 * 3 2 1 5 5 C 1.38807 * 120.00125 * 23.04886 * 3 2 1 6 6 N 1.31624 * 120.00039 * 12.92834 * 5 3 2 7 7 Si 1.86802 * 120.00305 * 192.92657 * 5 3 2 8 8 H 1.48503 * 109.47122 * 89.99988 * 7 5 3 9 9 H 1.48500 * 109.46932 * 209.99964 * 7 5 3 10 10 H 1.48498 * 109.46777 * 330.00053 * 7 5 3 11 11 C 1.46495 * 120.00575 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47467 * 89.99366 * 11 2 1 13 13 N 1.46501 * 109.47191 * 180.02562 * 12 11 2 14 14 C 1.34783 * 119.99920 * 180.02562 * 13 12 11 15 15 O 1.21282 * 119.99915 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99861 * 180.02562 * 14 13 12 17 17 H 1.08995 * 115.56160 * 34.26277 * 16 14 13 18 18 C 1.53119 * 117.51025 * 248.45827 * 16 14 13 19 19 C 1.52457 * 59.85970 * 252.55186 * 18 16 14 20 20 C 1.53248 * 128.58938 * 242.39928 * 19 18 16 21 21 C 1.53883 * 86.88683 * 194.88736 * 20 19 18 22 22 C 1.53426 * 128.60401 * 117.50679 * 19 18 16 23 23 H 1.09002 * 109.47066 * 275.11611 * 1 2 3 24 24 H 1.08995 * 109.47397 * 35.12337 * 1 2 3 25 25 H 1.09006 * 109.46496 * 155.12230 * 1 2 3 26 26 H 0.96996 * 120.00427 * 179.97438 * 6 5 3 27 27 H 1.09008 * 109.47002 * 329.99763 * 11 2 1 28 28 H 1.08997 * 109.47403 * 209.99723 * 11 2 1 29 29 H 1.09007 * 109.47189 * 60.00361 * 12 11 2 30 30 H 1.09000 * 109.47558 * 300.00299 * 12 11 2 31 31 H 0.96993 * 120.00233 * 0.02562 * 13 12 11 32 32 H 1.09008 * 117.51070 * 145.10342 * 18 16 14 33 33 H 1.09003 * 117.51798 * 0.02562 * 18 16 14 34 34 H 1.09004 * 113.64366 * 80.38779 * 20 19 18 35 35 H 1.09001 * 113.72796 * 309.40177 * 20 19 18 36 36 H 1.09004 * 113.58924 * 139.57015 * 21 20 19 37 37 H 1.09003 * 113.59185 * 270.31659 * 21 20 19 38 38 H 1.08995 * 113.64448 * 50.63419 * 22 19 18 39 39 H 1.09002 * 113.69579 * 279.58096 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1650 1.2234 -0.3661 5 6 1.5387 2.3401 0.4706 6 7 0.4117 2.2597 1.1459 7 14 2.3157 4.0074 0.1457 8 1 1.7985 4.5535 -1.1348 9 1 1.9756 4.9363 1.2533 10 1 3.7907 3.8579 0.0602 11 6 2.1976 -1.2686 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 7 3.1846 -2.9787 -1.4437 14 6 3.5219 -3.5617 -2.6112 15 8 3.2189 -3.0360 -3.6613 16 6 4.2745 -4.8673 -2.6117 17 1 4.0292 -5.5518 -1.7997 18 6 5.7224 -4.8489 -3.1094 19 6 4.6270 -5.4765 -3.9642 20 6 4.4882 -6.9323 -4.4221 21 6 3.4450 -6.4265 -5.4341 22 6 4.1409 -5.0561 -5.3573 23 1 -0.3633 0.0916 1.0236 24 1 -0.3634 0.8405 -0.5912 25 1 -0.3632 -0.9324 -0.4324 26 1 -0.0151 3.0661 1.4752 27 1 1.6085 -2.0286 0.5130 28 1 3.1500 -1.1384 0.5133 29 1 3.0416 -0.9499 -1.9569 30 1 1.5001 -1.8400 -1.9571 31 1 3.4266 -3.3994 -0.6039 32 1 6.4301 -5.5214 -2.6245 33 1 6.1306 -3.8924 -3.4360 34 1 4.0738 -7.5926 -3.6602 35 1 5.3889 -7.3339 -4.8864 36 1 3.5213 -6.9003 -6.4128 37 1 2.4268 -6.4210 -5.0451 38 1 4.9454 -4.9331 -6.0823 39 1 3.4486 -4.2143 -5.3442 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713467775.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:07 Heat of formation + Delta-G solvation = 11.472123 kcal Electronic energy + Delta-G solvation = -18302.861414 eV Core-core repulsion = 15439.911484 eV Total energy + Delta-G solvation = -2862.949930 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.35417 -39.39671 -37.81047 -35.68151 -34.60699 -33.26379 -29.97122 -27.95212 -26.54266 -26.03165 -24.17966 -23.54936 -22.39804 -21.32672 -19.38926 -18.78081 -18.04381 -17.11765 -16.59129 -16.49911 -16.09839 -15.91132 -15.43880 -15.33520 -15.00192 -14.28730 -14.28288 -13.74980 -13.23170 -13.08120 -12.90212 -12.82330 -12.70622 -12.50161 -12.42754 -12.29368 -12.17953 -11.98005 -11.80936 -11.32760 -10.99705 -10.80702 -10.69948 -10.43882 -10.06140 -8.86123 -7.87056 -5.37852 1.44602 1.47043 1.51313 1.55114 2.11682 2.50596 2.82984 3.26792 3.44318 3.64675 3.78234 3.86405 3.91343 4.00288 4.12331 4.20983 4.29764 4.51224 4.63292 4.67526 4.78912 4.83867 4.86680 4.91387 5.02392 5.04477 5.08841 5.12678 5.25645 5.33595 5.42882 5.51552 5.56275 5.60227 5.66820 6.28735 6.61973 7.10437 7.31514 7.80728 8.23635 9.16120 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.040955 B = 0.003751 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.508098 B = 7462.196552 C = 7640.447371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.617 5.617 3 C -0.270 4.270 4 H 0.069 0.931 5 C -0.050 4.050 6 N -0.936 5.936 7 Si 0.969 3.031 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.268 1.268 11 C 0.148 3.852 12 C 0.117 3.883 13 N -0.709 5.709 14 C 0.530 3.470 15 O -0.584 6.584 16 C -0.166 4.166 17 H 0.154 0.846 18 C -0.127 4.127 19 C -0.137 4.137 20 C -0.082 4.082 21 C -0.137 4.137 22 C -0.122 4.122 23 H 0.013 0.987 24 H 0.013 0.987 25 H 0.030 0.970 26 H 0.250 0.750 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.035 0.965 30 H 0.041 0.959 31 H 0.416 0.584 32 H 0.136 0.864 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.659 -20.124 -7.016 23.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.340 5.340 3 C -0.400 4.400 4 H 0.087 0.913 5 C -0.245 4.245 6 N -0.582 5.582 7 Si 0.797 3.203 8 H -0.216 1.216 9 H -0.217 1.217 10 H -0.192 1.192 11 C 0.021 3.979 12 C -0.010 4.010 13 N -0.361 5.361 14 C 0.318 3.682 15 O -0.464 6.464 16 C -0.186 4.186 17 H 0.171 0.829 18 C -0.164 4.164 19 C -0.137 4.137 20 C -0.119 4.119 21 C -0.174 4.174 22 C -0.159 4.159 23 H 0.031 0.969 24 H 0.032 0.968 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.253 0.747 32 H 0.154 0.846 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.124 0.876 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.319 -19.601 -7.646 23.011 hybrid contribution -0.093 1.443 0.305 1.478 sum 9.226 -18.157 -7.341 21.649 Atomic orbital electron populations 1.20593 0.82566 0.95920 0.98001 1.44028 1.02256 1.01576 1.86168 1.19509 0.98551 0.86863 1.35091 0.91296 1.25790 0.98570 1.01890 0.98242 1.70218 1.20698 1.27786 1.39485 0.85247 0.78491 0.79746 0.76846 1.21558 1.21700 1.19232 1.20944 0.96868 0.87614 0.92503 1.21829 0.94644 0.84169 1.00378 1.45849 1.57481 1.23677 1.09139 1.20434 0.78568 0.86088 0.83112 1.90629 1.56563 1.66392 1.32822 1.22137 1.00247 0.95644 1.00617 0.82867 1.22940 0.89215 1.02778 1.01500 1.22324 1.02046 0.98478 0.90867 1.22484 0.99607 0.91734 0.98070 1.22735 0.98231 0.96034 1.00411 1.22688 1.00236 0.98468 0.94490 0.96918 0.96837 0.95133 0.94094 0.91628 0.92245 0.94626 0.94061 0.74743 0.84571 0.89849 0.90055 0.87603 0.89988 0.91345 0.89477 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.76 8.98 127.77 1.15 9.90 16 2 N -0.62 -31.26 2.92 -726.94 -2.12 -33.39 16 3 C -0.27 -15.06 9.65 84.03 0.81 -14.25 16 4 H 0.07 3.76 7.86 -2.91 -0.02 3.73 16 5 C -0.05 -2.81 5.10 84.86 0.43 -2.37 16 6 N -0.94 -55.74 10.71 21.65 0.23 -55.50 16 7 Si 0.97 45.73 29.57 68.60 2.03 47.75 16 8 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 9 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 C 0.15 5.74 5.76 86.38 0.50 6.24 16 12 C 0.12 4.34 6.00 86.38 0.52 4.86 16 13 N -0.71 -20.09 5.56 -463.04 -2.57 -22.66 16 14 C 0.53 15.94 7.61 87.66 0.67 16.61 16 15 O -0.58 -22.97 14.10 -3.04 -0.04 -23.01 16 16 C -0.17 -3.36 6.19 -11.68 -0.07 -3.43 16 17 H 0.15 2.12 8.14 -2.39 -0.02 2.10 16 18 C -0.13 -2.21 10.23 30.45 0.31 -1.90 16 19 C -0.14 -2.67 2.88 -52.31 -0.15 -2.82 16 20 C -0.08 -1.13 8.10 30.98 0.25 -0.88 16 21 C -0.14 -2.42 8.07 31.19 0.25 -2.16 16 22 C -0.12 -2.82 7.64 31.04 0.24 -2.58 16 23 H 0.01 0.68 7.34 -2.39 -0.02 0.66 16 24 H 0.01 0.71 7.34 -2.39 -0.02 0.70 16 25 H 0.03 1.30 8.03 -2.38 -0.02 1.28 16 26 H 0.25 14.42 8.31 -92.71 -0.77 13.64 16 27 H 0.07 2.25 8.07 -2.38 -0.02 2.23 16 28 H 0.06 2.23 8.04 -2.39 -0.02 2.22 16 29 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.42 8.60 8.47 -92.71 -0.79 7.81 16 32 H 0.14 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.80 8.14 -2.39 -0.02 1.79 16 39 H 0.06 1.83 5.83 -2.39 -0.01 1.81 16 Total: -1.00 -70.59 321.13 2.66 -67.93 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.24 Total: 11.68 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 4.90 Total: 7.21 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -4.46 Total: -111.56 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.04 Total: -23.01 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -70.59 2.66 -67.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713467775.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.398 kcal (2) G-P(sol) polarization free energy of solvation -70.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds