Wall clock time and date at job start Sun Mar 29 2020 23:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36936 * 120.00231 * 2 1 4 4 H 1.07997 * 120.00121 * 204.85475 * 3 2 1 5 5 C 1.38810 * 119.99781 * 24.85221 * 3 2 1 6 6 N 1.31614 * 120.00461 * 5.81465 * 5 3 2 7 7 Si 1.86802 * 119.99626 * 185.81134 * 5 3 2 8 8 H 1.48495 * 109.47409 * 90.00465 * 7 5 3 9 9 H 1.48501 * 109.46932 * 210.00236 * 7 5 3 10 10 H 1.48494 * 109.47179 * 329.99793 * 7 5 3 11 11 C 1.46502 * 119.99557 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.46750 * 269.99471 * 11 2 1 13 13 N 1.46502 * 109.46750 * 179.97438 * 12 11 2 14 14 C 1.46502 * 120.00000 * 269.99573 * 13 12 11 15 15 C 1.34775 * 119.99946 * 90.00245 * 13 12 11 16 16 O 1.21620 * 119.99881 * 0.38008 * 15 13 12 17 17 C 1.47102 * 120.00346 * 180.37324 * 15 13 12 18 18 C 1.32603 * 124.62413 * 172.48049 * 17 15 13 19 19 C 1.51114 * 110.76254 * 180.19597 * 18 17 15 20 20 C 1.54732 * 104.75848 * 343.05896 * 19 18 17 21 21 C 1.51111 * 124.61585 * 352.44192 * 17 15 13 22 22 H 1.09003 * 109.46414 * 275.02033 * 1 2 3 23 23 H 1.08999 * 109.46887 * 35.01430 * 1 2 3 24 24 H 1.08994 * 109.47729 * 155.01797 * 1 2 3 25 25 H 0.96997 * 120.00483 * 179.97438 * 6 5 3 26 26 H 1.08995 * 109.47093 * 149.99818 * 11 2 1 27 27 H 1.08998 * 109.47115 * 29.99676 * 11 2 1 28 28 H 1.09003 * 109.47008 * 60.00708 * 12 11 2 29 29 H 1.08998 * 109.47480 * 299.99982 * 12 11 2 30 30 H 1.08990 * 109.47541 * 263.26487 * 14 13 12 31 31 H 1.08999 * 109.46964 * 23.27598 * 14 13 12 32 32 H 1.09007 * 109.46733 * 143.26797 * 14 13 12 33 33 H 1.08001 * 124.62334 * 359.92711 * 18 17 15 34 34 H 1.09005 * 110.36641 * 102.00781 * 19 18 17 35 35 H 1.08996 * 110.36513 * 224.32684 * 19 18 17 36 36 H 1.09006 * 111.18148 * 267.17715 * 20 19 18 37 37 H 1.08996 * 110.85072 * 143.33395 * 20 19 18 38 38 H 1.09005 * 110.36747 * 315.46728 * 21 17 15 39 39 H 1.09001 * 110.36887 * 77.68235 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1548 1.2292 -0.3931 5 6 1.5522 2.3323 0.5052 6 7 0.3743 2.2585 1.0878 7 14 2.4198 3.9801 0.3583 8 1 2.0256 4.6354 -0.9146 9 1 2.0339 4.8463 1.5011 10 1 3.8895 3.7686 0.3719 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 7 3.1844 -2.9801 1.4412 14 6 2.4513 -4.2485 1.4411 15 6 4.5321 -2.9808 1.4410 16 8 5.1407 -1.9278 1.4482 17 6 5.2671 -4.2550 1.4321 18 6 6.5806 -4.3662 1.2883 19 6 7.0022 -5.8170 1.3209 20 6 5.7966 -6.5640 1.9396 21 6 4.6281 -5.6156 1.5865 22 1 -0.3632 0.0899 1.0238 23 1 -0.3633 0.8417 -0.5897 24 1 -0.3634 -0.9314 -0.4340 25 1 -0.0432 3.0595 1.4412 26 1 3.1498 -1.1383 -0.5143 27 1 1.6083 -2.0282 -0.5147 28 1 1.5001 -1.8416 1.9556 29 1 3.0417 -0.9516 1.9559 30 1 2.3740 -4.6237 2.4614 31 1 1.4520 -4.0905 1.0353 32 1 2.9824 -4.9750 0.8260 33 1 7.2566 -3.5336 1.1606 34 1 7.1976 -6.1780 0.3111 35 1 7.8859 -5.9412 1.9466 36 1 5.9065 -6.6627 3.0196 37 1 5.6628 -7.5392 1.4716 38 1 3.8946 -5.6010 2.3927 39 1 4.1578 -5.9221 0.6521 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715801109.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:54 Heat of formation + Delta-G solvation = 0.634791 kcal Electronic energy + Delta-G solvation = -18852.664637 eV Core-core repulsion = 15989.244765 eV Total energy + Delta-G solvation = -2863.419872 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.28273 -38.76779 -37.78989 -36.48371 -33.53876 -31.14648 -30.12499 -28.88643 -27.94140 -27.51059 -25.41621 -22.77347 -21.99003 -21.35227 -19.36046 -18.84278 -17.60369 -17.36242 -16.98373 -16.67557 -15.87645 -15.71458 -15.32758 -14.99994 -14.37672 -14.21984 -13.97139 -13.88198 -13.41055 -13.16526 -13.05151 -12.92870 -12.81740 -12.73893 -12.49608 -12.42045 -12.11819 -12.07631 -11.95831 -11.65381 -11.45142 -10.87889 -10.71041 -10.07326 -9.56167 -8.77712 -7.88598 -5.39307 0.40873 1.40789 1.42599 1.52313 2.05039 2.27501 2.47774 3.25992 3.46980 3.67126 3.75807 3.97389 4.16201 4.20838 4.32440 4.37681 4.44679 4.56667 4.72178 4.75243 4.79210 4.83279 4.91661 4.97047 5.02280 5.05721 5.13637 5.23894 5.32405 5.35984 5.43601 5.54560 5.56265 5.63376 5.72122 6.29613 6.48376 7.12033 7.19489 7.80869 8.22615 9.14045 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.035253 B = 0.004808 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.068336 B = 5822.022099 C = 6409.642499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.618 5.618 3 C -0.268 4.268 4 H 0.055 0.945 5 C -0.045 4.045 6 N -0.934 5.934 7 Si 0.967 3.033 8 H -0.278 1.278 9 H -0.287 1.287 10 H -0.279 1.279 11 C 0.151 3.849 12 C 0.111 3.889 13 N -0.605 5.605 14 C 0.053 3.947 15 C 0.543 3.457 16 O -0.601 6.601 17 C -0.209 4.209 18 C -0.081 4.081 19 C -0.100 4.100 20 C -0.120 4.120 21 C -0.091 4.091 22 H 0.009 0.991 23 H 0.019 0.981 24 H 0.035 0.965 25 H 0.251 0.749 26 H 0.022 0.978 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.998 -22.734 0.910 23.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.342 5.342 3 C -0.398 4.398 4 H 0.073 0.927 5 C -0.240 4.240 6 N -0.581 5.581 7 Si 0.795 3.205 8 H -0.204 1.204 9 H -0.213 1.213 10 H -0.205 1.205 11 C 0.024 3.976 12 C -0.015 4.015 13 N -0.336 5.336 14 C -0.088 4.088 15 C 0.335 3.665 16 O -0.484 6.484 17 C -0.212 4.212 18 C -0.101 4.101 19 C -0.137 4.137 20 C -0.157 4.157 21 C -0.127 4.127 22 H 0.027 0.973 23 H 0.038 0.962 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.130 -22.083 0.973 23.226 hybrid contribution 0.287 1.865 0.164 1.894 sum 7.417 -20.218 1.137 21.566 Atomic orbital electron populations 1.20623 0.81717 0.96270 0.97978 1.44140 1.02604 1.01218 1.86219 1.19413 0.98988 0.87532 1.33905 0.92730 1.25795 0.98149 1.01827 0.98220 1.70186 1.17100 1.28142 1.42627 0.85275 0.78067 0.79837 0.77330 1.20425 1.21277 1.20487 1.21114 0.94968 0.87368 0.94197 1.22019 0.95164 0.84340 0.99944 1.47947 1.05490 1.08320 1.71881 1.22873 0.97961 0.84395 1.03542 1.18916 0.82378 0.89497 0.75736 1.90784 1.69135 1.35486 1.52968 1.21925 0.96216 0.93979 1.09043 1.24347 0.94885 0.99960 0.90912 1.21564 0.99970 0.89019 1.03126 1.22566 0.92723 0.98818 1.01613 1.21828 0.99063 0.88616 1.03183 0.97309 0.96213 0.94664 0.93996 0.95995 0.91397 0.90495 0.94645 0.90734 0.90248 0.87076 0.86583 0.88054 0.89037 0.90534 0.87996 0.89185 0.87975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.04 9.00 127.77 1.15 10.19 16 2 N -0.62 -33.38 2.92 -726.93 -2.13 -35.50 16 3 C -0.27 -16.15 9.67 84.03 0.81 -15.34 16 4 H 0.05 3.37 7.83 -2.91 -0.02 3.34 16 5 C -0.04 -2.65 5.23 84.86 0.44 -2.21 16 6 N -0.93 -56.96 10.45 21.65 0.23 -56.73 16 7 Si 0.97 48.20 29.56 68.60 2.03 50.23 16 8 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 9 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 10 H -0.28 -13.86 7.11 99.48 0.71 -13.16 16 11 C 0.15 6.80 6.03 86.38 0.52 7.32 16 12 C 0.11 4.67 5.70 86.38 0.49 5.16 16 13 N -0.61 -20.06 2.87 -851.05 -2.45 -22.50 16 14 C 0.05 1.06 8.91 127.77 1.14 2.20 16 15 C 0.54 19.92 7.65 86.57 0.66 20.59 16 16 O -0.60 -28.98 16.36 -4.09 -0.07 -29.05 16 17 C -0.21 -5.29 5.94 -18.56 -0.11 -5.40 16 18 C -0.08 -1.84 10.43 24.66 0.26 -1.58 16 19 C -0.10 -1.28 6.81 30.57 0.21 -1.07 16 20 C -0.12 -1.22 7.17 31.72 0.23 -0.99 16 21 C -0.09 -1.31 4.45 30.52 0.14 -1.18 16 22 H 0.01 0.47 7.35 -2.39 -0.02 0.45 16 23 H 0.02 1.06 7.26 -2.39 -0.02 1.05 16 24 H 0.03 1.47 7.84 -2.39 -0.02 1.45 16 25 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 26 H 0.02 1.07 8.04 -2.39 -0.02 1.06 16 27 H 0.07 2.59 7.86 -2.39 -0.02 2.57 16 28 H 0.08 3.05 8.07 -2.39 -0.02 3.04 16 29 H 0.03 1.83 7.42 -2.39 -0.02 1.81 16 30 H 0.07 1.22 7.06 -2.39 -0.02 1.20 16 31 H 0.08 1.48 8.02 -2.39 -0.02 1.46 16 32 H 0.11 1.65 4.16 -2.38 -0.01 1.64 16 33 H 0.12 3.03 8.04 -2.91 -0.02 3.00 16 34 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.09 1.17 5.89 -2.38 -0.01 1.16 16 39 H 0.10 1.12 6.60 -2.39 -0.02 1.11 16 Total: -1.00 -78.04 312.79 4.58 -73.46 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: 1.02 Total: 2.40 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 5.94 Total: 17.70 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -4.34 Total: -114.74 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.07 Total: -29.05 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 2.03 Total: 50.23 kcal Total: -78.04 4.58 -73.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715801109.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.095 kcal (2) G-P(sol) polarization free energy of solvation -78.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds