Wall clock time and date at job start Sun Mar 29 2020 23:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36933 * 120.00097 * 2 1 4 4 H 1.07999 * 119.99741 * 203.04857 * 3 2 1 5 5 C 1.38811 * 120.00272 * 23.03713 * 3 2 1 6 6 N 1.31625 * 119.99589 * 12.93699 * 5 3 2 7 7 Si 1.86794 * 120.00319 * 192.92672 * 5 3 2 8 8 H 1.48508 * 109.46920 * 60.00769 * 7 5 3 9 9 H 1.48500 * 109.47426 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47535 * 300.00960 * 7 5 3 11 11 C 1.46503 * 119.99572 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.46851 * 90.00198 * 11 2 1 13 13 N 1.46502 * 109.46614 * 179.97438 * 12 11 2 14 14 C 1.46494 * 120.00357 * 269.99567 * 13 12 11 15 15 C 1.34782 * 119.99829 * 89.99907 * 13 12 11 16 16 O 1.21280 * 120.00126 * 0.02562 * 15 13 12 17 17 C 1.50693 * 119.99910 * 179.97438 * 15 13 12 18 18 H 1.08996 * 115.55296 * 34.33365 * 17 15 13 19 19 C 1.53011 * 117.51972 * 248.62574 * 17 15 13 20 20 C 1.52994 * 59.99756 * 252.52320 * 19 17 15 21 21 C 1.52994 * 138.58236 * 229.10702 * 20 19 17 22 22 C 1.53006 * 60.03035 * 229.12077 * 21 20 19 23 23 H 1.09001 * 109.46965 * 275.12394 * 1 2 3 24 24 H 1.09000 * 109.46787 * 35.12554 * 1 2 3 25 25 H 1.09003 * 109.47327 * 155.12802 * 1 2 3 26 26 H 0.96998 * 119.99507 * 179.97438 * 6 5 3 27 27 H 1.09002 * 109.47173 * 329.99570 * 11 2 1 28 28 H 1.08999 * 109.46572 * 209.99965 * 11 2 1 29 29 H 1.09001 * 109.47231 * 59.99832 * 12 11 2 30 30 H 1.08993 * 109.46929 * 299.99371 * 12 11 2 31 31 H 1.09000 * 109.47342 * 270.00512 * 14 13 12 32 32 H 1.09004 * 109.46696 * 30.00663 * 14 13 12 33 33 H 1.09003 * 109.47300 * 150.00258 * 14 13 12 34 34 H 1.08999 * 117.49805 * 145.02835 * 19 17 15 35 35 H 1.09005 * 117.49399 * 0.02562 * 19 17 15 36 36 H 1.09002 * 117.49681 * 121.62180 * 21 20 19 37 37 H 1.08999 * 117.49927 * 336.61725 * 21 20 19 38 38 H 1.09002 * 117.50105 * 107.47762 * 22 21 20 39 39 H 1.08994 * 117.49730 * 252.48050 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2231 -0.3662 5 6 1.5388 2.3401 0.4704 6 7 0.4118 2.2598 1.1457 7 14 2.3160 4.0073 0.1454 8 1 2.4198 4.2280 -1.3195 9 1 1.4744 5.0719 0.7484 10 1 3.6721 4.0475 0.7493 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7111 -1.4418 13 7 3.1854 -2.9796 -1.4411 14 6 4.6503 -2.9791 -1.4414 15 6 2.5119 -4.1470 -1.4404 16 8 1.2991 -4.1474 -1.4408 17 6 3.2658 -5.4518 -1.4404 18 1 4.2043 -5.4525 -0.8862 19 6 3.1906 -6.3118 -2.7037 20 6 2.4441 -6.7424 -1.4396 21 6 2.2755 -7.9948 -0.5772 22 6 1.0439 -7.2121 -1.0371 23 1 -0.3633 0.0918 1.0236 24 1 -0.3633 0.8405 -0.5913 25 1 -0.3634 -0.9324 -0.4322 26 1 -0.0149 3.0663 1.4747 27 1 1.6084 -2.0282 0.5148 28 1 3.1499 -1.1382 0.5143 29 1 3.0416 -0.9517 -1.9559 30 1 1.5001 -1.8416 -1.9555 31 1 5.0136 -2.9795 -2.4691 32 1 5.0134 -2.0888 -0.9280 33 1 5.0140 -3.8688 -0.9271 34 1 4.0799 -6.8781 -2.9807 35 1 2.5961 -5.9335 -3.5354 36 1 2.5538 -7.9230 0.4743 37 1 2.4636 -8.9595 -1.0485 38 1 0.4220 -7.6616 -1.8112 39 1 0.5118 -6.6256 -0.2881 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715955865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:01 Heat of formation + Delta-G solvation = 55.682396 kcal Electronic energy + Delta-G solvation = -18643.548529 eV Core-core repulsion = 15782.515701 eV Total energy + Delta-G solvation = -2861.032829 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.96403 -37.66424 -35.90509 -34.80436 -32.73293 -31.38926 -28.67592 -26.46795 -25.76869 -24.62161 -22.52451 -22.46411 -20.54501 -19.75159 -18.36418 -17.07515 -16.59485 -15.90360 -15.36473 -15.08729 -14.68406 -14.49058 -13.98188 -13.58758 -13.06386 -12.95043 -12.54275 -12.46520 -12.15609 -12.01117 -11.71974 -11.54855 -11.23528 -10.82650 -10.79827 -10.50198 -10.29661 -10.19311 -10.14749 -10.06779 -9.87189 -9.77063 -9.42717 -8.63738 -8.31855 -6.67754 -5.67822 -3.15882 2.66786 3.13313 3.40045 3.45443 3.46460 3.65026 3.72999 4.19199 4.53220 4.60991 4.70086 4.93461 5.22817 5.32626 5.39401 5.45269 5.49288 5.50256 5.55866 5.56558 5.70851 5.75684 5.82125 5.86715 5.88507 6.11253 6.21476 6.34980 6.61459 6.72024 6.92717 7.03135 7.45519 7.68585 7.78796 7.84588 8.42492 8.48781 9.27514 9.91124 10.41561 11.36540 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.041011 B = 0.004351 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.579135 B = 6434.344763 C = 6882.020822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.600 5.600 3 C -0.259 4.259 4 H 0.067 0.933 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.144 3.856 12 C 0.093 3.907 13 N -0.609 5.609 14 C 0.079 3.921 15 C 0.535 3.465 16 O -0.533 6.533 17 C -0.139 4.139 18 H 0.123 0.877 19 C -0.101 4.101 20 C -0.202 4.202 21 C -0.131 4.131 22 C -0.113 4.113 23 H 0.030 0.970 24 H 0.040 0.960 25 H 0.001 0.999 26 H 0.253 0.747 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.068 -17.584 -5.952 20.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.323 5.323 3 C -0.388 4.388 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.015 3.985 12 C -0.031 4.031 13 N -0.342 5.342 14 C -0.064 4.064 15 C 0.322 3.678 16 O -0.409 6.409 17 C -0.160 4.160 18 H 0.141 0.859 19 C -0.138 4.138 20 C -0.203 4.203 21 C -0.168 4.168 22 C -0.150 4.150 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.020 0.980 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.286 -17.392 -5.858 19.746 hybrid contribution 0.606 1.140 -0.104 1.296 sum 7.892 -16.252 -5.962 19.025 Atomic orbital electron populations 1.20801 0.82404 0.95571 0.99453 1.43839 1.01979 1.00403 1.86090 1.19133 0.98247 0.85659 1.35791 0.91546 1.25036 0.97879 0.98519 0.98151 1.70079 1.19383 1.27274 1.38361 0.86332 0.78404 0.83843 0.77907 1.21079 1.21621 1.20960 1.20971 0.96118 0.88640 0.92757 1.22512 0.96694 0.82076 1.01814 1.47919 1.06849 1.06536 1.72936 1.21793 0.80058 1.03084 1.01490 1.19619 0.87471 0.84146 0.76545 1.90695 1.13703 1.87107 1.49404 1.22052 1.00632 0.89258 1.04091 0.85915 1.22625 1.01205 0.99737 0.90259 1.21156 1.01570 0.95980 1.01594 1.22752 1.01877 0.93302 0.98872 1.22600 0.89137 1.00759 1.02487 0.95129 0.94148 0.98031 0.93698 0.94431 0.93738 0.90838 0.90633 0.92855 0.90685 0.91422 0.87814 0.88209 0.88596 0.88518 0.88652 0.88064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.31 8.98 59.85 0.54 4.84 16 2 N -0.60 -15.89 2.92 -181.11 -0.53 -16.42 16 3 C -0.26 -7.25 9.65 -15.06 -0.15 -7.40 16 4 H 0.07 1.78 7.86 -52.49 -0.41 1.37 16 5 C 0.00 0.08 5.10 -17.43 -0.09 -0.01 16 6 N -0.91 -27.17 10.71 55.49 0.59 -26.58 16 7 Si 0.91 22.03 29.57 -169.99 -5.03 17.01 16 8 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 C 0.14 3.19 5.97 -4.04 -0.02 3.16 16 12 C 0.09 1.78 5.73 -4.04 -0.02 1.76 16 13 N -0.61 -9.53 2.87 -181.57 -0.52 -10.05 16 14 C 0.08 0.88 10.26 59.84 0.61 1.50 16 15 C 0.54 8.74 7.46 -10.99 -0.08 8.66 16 16 O -0.53 -10.84 15.83 5.56 0.09 -10.75 16 17 C -0.14 -1.69 5.29 -91.77 -0.49 -2.17 16 18 H 0.12 1.20 6.44 -51.93 -0.33 0.87 16 19 C -0.10 -1.03 10.24 -26.73 -0.27 -1.30 16 20 C -0.20 -2.37 5.06 -154.48 -0.78 -3.15 16 21 C -0.13 -1.23 10.53 -26.73 -0.28 -1.51 16 22 C -0.11 -1.32 10.17 -26.69 -0.27 -1.59 16 23 H 0.03 0.87 7.34 -51.93 -0.38 0.49 16 24 H 0.04 1.12 7.34 -51.93 -0.38 0.74 16 25 H 0.00 0.03 8.03 -51.93 -0.42 -0.39 16 26 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 28 H 0.04 0.96 8.04 -51.93 -0.42 0.54 16 29 H 0.07 1.38 8.07 -51.93 -0.42 0.96 16 30 H 0.08 1.60 7.42 -51.93 -0.39 1.22 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.07 0.60 6.00 -51.93 -0.31 0.28 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 325.65 15.07 4.91 4.91 Total: -1.00 -33.14 325.65 -8.19 -41.33 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -6.39 Total: -2.23 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -1.30 Total: 2.79 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.46 Total: -53.05 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.14 -8.19 -41.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715955865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.012 kcal (2) G-P(sol) polarization free energy of solvation -33.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds