Wall clock time and date at job start Sun Mar 29 2020 23:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34779 * 119.99925 * 2 1 4 4 O 1.21281 * 120.00104 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.00013 * 359.97438 * 3 2 1 6 6 C 1.53003 * 117.50050 * 248.74694 * 5 3 2 7 7 C 1.53000 * 117.50080 * 180.08930 * 5 3 2 8 8 C 1.46501 * 120.00109 * 179.97438 * 2 1 3 9 9 H 1.08999 * 109.47004 * 180.02562 * 8 2 1 10 10 C 1.53002 * 109.46932 * 300.00204 * 8 2 1 11 11 N 1.46506 * 109.47035 * 304.99709 * 10 8 2 12 12 C 1.36938 * 119.99589 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00325 * 0.02562 * 12 11 10 14 14 C 1.38815 * 119.99821 * 180.02562 * 12 11 10 15 15 N 1.31625 * 119.99700 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00122 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47389 * 59.99599 * 16 14 12 18 18 H 1.48505 * 109.47237 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46896 * 299.99625 * 16 14 12 20 20 C 1.52999 * 109.47155 * 59.99903 * 8 2 1 21 21 C 1.52997 * 117.50190 * 248.62307 * 20 8 2 22 22 C 1.52997 * 117.49880 * 179.97438 * 20 8 2 23 23 H 1.09003 * 109.46805 * 270.00195 * 1 2 3 24 24 H 1.08995 * 109.46832 * 30.00167 * 1 2 3 25 25 H 1.08998 * 109.46815 * 149.99922 * 1 2 3 26 26 H 1.09001 * 115.55326 * 34.42224 * 5 3 2 27 27 H 1.09003 * 117.49457 * 0.02562 * 6 5 3 28 28 H 1.09005 * 117.49499 * 145.01904 * 6 5 3 29 29 H 1.08994 * 117.50164 * 214.98306 * 7 5 3 30 30 H 1.09007 * 117.49492 * 359.97438 * 7 5 3 31 31 H 1.09004 * 109.46930 * 184.99939 * 10 8 2 32 32 H 1.09000 * 109.47312 * 64.99883 * 10 8 2 33 33 H 0.96999 * 120.00080 * 0.02562 * 11 10 8 34 34 H 0.97000 * 119.99481 * 179.97438 * 15 14 12 35 35 H 1.09001 * 115.54684 * 34.33293 * 20 8 2 36 36 H 1.09004 * 117.49591 * 359.97438 * 21 20 8 37 37 H 1.08997 * 117.49891 * 145.01567 * 21 20 8 38 38 H 1.08996 * 117.50345 * 214.98116 * 22 20 8 39 39 H 1.09003 * 117.49914 * 359.97438 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3854 2.4723 -0.0006 6 6 1.4587 3.3298 -1.2656 7 6 2.2075 3.7627 -0.0027 8 6 2.1976 -1.2687 0.0006 9 1 3.2692 -1.0695 0.0009 10 6 1.8279 -2.0705 1.2502 11 7 2.0707 -1.2552 2.4430 12 6 1.8102 -1.7665 3.6863 13 1 1.4263 -2.7709 3.7877 14 6 2.0398 -0.9939 4.8165 15 7 2.5083 0.2299 4.6930 16 14 1.6852 -1.6916 6.5126 17 1 2.5140 -2.9039 6.7324 18 1 2.0126 -0.6749 7.5444 19 1 0.2475 -2.0506 6.6095 20 6 1.8279 -2.0716 -1.2483 21 6 1.0141 -3.3519 -1.0499 22 6 2.4934 -3.4368 -1.4330 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 0.4476 2.4740 0.5550 27 1 2.0516 2.9498 -2.0976 28 1 0.5691 3.8959 -1.5421 29 1 1.8103 4.6133 0.5511 30 1 3.2934 3.6676 -0.0032 31 1 2.4377 -2.9728 1.2965 32 1 0.7742 -2.3459 1.2066 33 1 2.4152 -0.3531 2.3520 34 1 2.6683 0.7699 5.4828 35 1 1.6303 -1.4829 -2.1441 36 1 0.7423 -3.6224 -0.0295 37 1 0.2806 -3.6056 -1.8152 38 1 2.7328 -3.7466 -2.4502 39 1 3.1949 -3.7629 -0.6650 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717725088.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:04 Heat of formation + Delta-G solvation = 35.922996 kcal Electronic energy + Delta-G solvation = -19382.610008 eV Core-core repulsion = 16520.720347 eV Total energy + Delta-G solvation = -2861.889661 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.95923 -38.03484 -35.80843 -34.84779 -33.92302 -31.08015 -28.33384 -26.37275 -24.79995 -23.33296 -22.50542 -22.29753 -21.86668 -19.43866 -18.36441 -17.18837 -17.04377 -16.21867 -15.25862 -15.08653 -14.59395 -14.37808 -13.80268 -13.61743 -13.17534 -12.85959 -12.65007 -12.28660 -12.23811 -11.83727 -11.50275 -11.40027 -11.25546 -11.02507 -10.76913 -10.72754 -10.44854 -10.33808 -10.24657 -10.09062 -9.72373 -9.65844 -9.28264 -8.82424 -8.15754 -6.86529 -5.69846 -2.99503 2.90765 3.31513 3.45777 3.50019 3.51480 3.99949 4.06983 4.60836 4.76420 4.89786 4.97090 5.05429 5.10443 5.14405 5.31804 5.42402 5.50809 5.59935 5.63400 5.75464 5.77716 5.87561 5.92367 5.97510 6.04612 6.08778 6.18561 6.28165 6.29514 6.33042 6.42063 6.50196 6.75847 7.05894 7.71942 7.83852 8.47458 8.65818 9.58675 10.17731 10.53231 11.52042 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.015141 B = 0.008168 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.877002 B = 3427.397785 C = 4806.295394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.591 5.591 3 C 0.548 3.452 4 O -0.542 6.542 5 C -0.185 4.185 6 C -0.158 4.158 7 C -0.147 4.147 8 C 0.161 3.839 9 H 0.102 0.898 10 C 0.144 3.856 11 N -0.727 5.727 12 C -0.242 4.242 13 H 0.068 0.932 14 C -0.012 4.012 15 N -0.928 5.928 16 Si 0.906 3.094 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.287 1.287 20 C -0.158 4.158 21 C -0.184 4.184 22 C -0.173 4.173 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.123 0.877 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.026 0.974 32 H 0.025 0.975 33 H 0.387 0.613 34 H 0.255 0.745 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.714 0.912 -14.460 15.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.323 5.323 3 C 0.336 3.664 4 O -0.419 6.419 5 C -0.206 4.206 6 C -0.196 4.196 7 C -0.184 4.184 8 C 0.058 3.942 9 H 0.120 0.880 10 C 0.016 3.984 11 N -0.372 5.372 12 C -0.373 4.373 13 H 0.086 0.914 14 C -0.209 4.209 15 N -0.576 5.576 16 Si 0.737 3.263 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.214 1.214 20 C -0.177 4.177 21 C -0.221 4.221 22 C -0.211 4.211 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.141 0.859 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.221 0.779 34 H 0.065 0.935 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.120 0.806 -14.309 15.218 hybrid contribution -0.298 -0.173 1.072 1.126 sum -5.417 0.633 -13.236 14.316 Atomic orbital electron populations 1.21704 0.79840 1.02026 1.02450 1.47474 1.06819 1.05193 1.72795 1.19538 0.87227 0.84314 0.75321 1.90667 1.13916 1.87106 1.50221 1.22180 1.02847 0.91079 1.04488 1.22905 1.03042 1.02157 0.91483 1.22917 1.00146 0.95724 0.99613 1.20817 0.97916 0.82525 0.92988 0.87981 1.21103 0.97672 0.93481 0.86181 1.42303 1.78769 1.15810 1.00299 1.19151 1.36458 0.97985 0.83719 0.91385 1.24754 1.02072 0.96329 0.97726 1.69689 1.50795 1.08670 1.28454 0.86289 0.77840 0.77751 0.84399 1.21322 1.21712 1.21366 1.22583 1.05557 0.90077 0.99526 1.23201 0.94022 1.01506 1.03389 1.22948 0.96112 0.99627 1.02408 0.91874 0.91676 0.91281 0.85876 0.88634 0.88214 0.88139 0.87484 0.95634 0.95694 0.77916 0.93521 0.87968 0.87476 0.89302 0.89082 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.17 9.17 59.85 0.55 1.72 16 2 N -0.59 -10.26 2.24 -173.93 -0.39 -10.65 16 3 C 0.55 10.37 7.16 -10.99 -0.08 10.29 16 4 O -0.54 -12.26 15.59 5.56 0.09 -12.17 16 5 C -0.18 -2.78 4.79 -91.77 -0.44 -3.22 16 6 C -0.16 -1.85 10.24 -26.69 -0.27 -2.13 16 7 C -0.15 -2.02 10.05 -26.70 -0.27 -2.29 16 8 C 0.16 2.90 2.59 -67.93 -0.18 2.72 16 9 H 0.10 2.13 6.90 -51.93 -0.36 1.77 16 10 C 0.14 2.97 4.19 -4.04 -0.02 2.96 16 11 N -0.73 -19.19 5.43 -59.90 -0.33 -19.52 16 12 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 13 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 14 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 15 N -0.93 -29.03 13.06 55.49 0.72 -28.30 16 16 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 18 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 20 C -0.16 -2.20 4.96 -90.62 -0.45 -2.65 16 21 C -0.18 -2.28 9.51 -26.71 -0.25 -2.53 16 22 C -0.17 -2.17 9.94 -26.71 -0.27 -2.44 16 23 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.06 0.74 6.64 -51.93 -0.34 0.40 16 25 H 0.07 0.86 7.21 -51.93 -0.37 0.48 16 26 H 0.12 1.72 7.27 -51.93 -0.38 1.34 16 27 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.11 1.66 7.67 -51.93 -0.40 1.26 16 31 H 0.03 0.54 7.44 -51.93 -0.39 0.15 16 32 H 0.03 0.50 6.31 -51.93 -0.33 0.18 16 33 H 0.39 11.13 7.06 -40.82 -0.29 10.84 16 34 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 35 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.11 1.46 5.80 -51.93 -0.30 1.16 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.10 1.31 7.66 -51.93 -0.40 0.91 16 LS Contribution 318.37 15.07 4.80 4.80 Total: -1.00 -33.53 318.37 -8.11 -41.64 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -6.06 Total: 11.51 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -1.92 Total: -5.13 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: 0.01 Total: -58.47 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.53 -8.11 -41.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717725088.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.565 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds