Wall clock time and date at job start Sun Mar 29 2020 23:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36941 * 120.00106 * 2 1 4 4 H 1.07994 * 120.00612 * 202.34937 * 3 2 1 5 5 C 1.38815 * 119.99363 * 22.35175 * 3 2 1 6 6 N 1.31614 * 120.00775 * 11.34100 * 5 3 2 7 7 Si 1.86807 * 119.99582 * 191.34699 * 5 3 2 8 8 H 1.48493 * 109.47255 * 59.99644 * 7 5 3 9 9 H 1.48503 * 109.47081 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46799 * 299.99658 * 7 5 3 11 11 C 1.46492 * 120.00133 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47163 * 269.99416 * 11 2 1 13 13 C 1.52999 * 109.47718 * 179.97438 * 12 11 2 14 14 N 1.46501 * 109.47530 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99788 * 179.73028 * 14 13 12 16 16 O 1.21615 * 120.00114 * 359.97438 * 15 14 13 17 17 C 1.47102 * 119.99602 * 180.02562 * 15 14 13 18 18 C 1.32994 * 119.99671 * 179.97438 * 17 15 14 19 19 C 1.51401 * 136.31718 * 359.63241 * 18 17 15 20 20 C 1.53381 * 87.51810 * 206.05502 * 19 18 17 21 21 C 1.51407 * 136.31392 * 179.97438 * 18 17 15 22 22 H 1.09003 * 109.47010 * 274.20641 * 1 2 3 23 23 H 1.09000 * 109.47654 * 34.20354 * 1 2 3 24 24 H 1.09000 * 109.47710 * 154.20750 * 1 2 3 25 25 H 0.96991 * 120.00448 * 179.97438 * 6 5 3 26 26 H 1.09004 * 109.47534 * 149.99754 * 11 2 1 27 27 H 1.08999 * 109.47770 * 29.99391 * 11 2 1 28 28 H 1.09007 * 109.47119 * 59.99757 * 12 11 2 29 29 H 1.08998 * 109.47358 * 300.00140 * 12 11 2 30 30 H 1.09007 * 109.46795 * 59.99839 * 13 12 11 31 31 H 1.08998 * 109.47050 * 300.00609 * 13 12 11 32 32 H 0.96996 * 119.99738 * 0.02562 * 14 13 12 33 33 H 1.07998 * 119.99916 * 359.97438 * 17 15 14 34 34 H 1.08996 * 113.55812 * 320.63028 * 19 18 17 35 35 H 1.08998 * 113.56468 * 91.36978 * 19 18 17 36 36 H 1.09004 * 113.97072 * 220.29461 * 20 19 18 37 37 H 1.09001 * 113.60121 * 88.79024 * 20 19 18 38 38 H 1.08997 * 113.56197 * 268.62940 * 21 18 17 39 39 H 1.09003 * 113.55858 * 39.36579 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2212 -0.3556 5 6 1.5337 2.3429 0.4572 6 7 0.3841 2.2690 1.0937 7 14 2.3365 4.0048 0.1688 8 1 2.4913 4.2333 -1.2902 9 1 1.4849 5.0735 0.7502 10 1 3.6719 4.0287 0.8181 11 6 2.1974 -1.2686 -0.0006 12 6 2.4526 -1.7109 1.4417 13 6 3.2170 -3.0362 1.4413 14 7 3.4608 -3.4599 2.8223 15 6 4.1181 -4.6106 3.0681 16 8 4.5084 -5.2974 2.1434 17 6 4.3623 -5.0363 4.4548 18 6 5.0104 -6.1721 4.6973 19 6 5.6319 -7.2764 3.8689 20 6 5.3993 -8.2115 5.0622 21 6 5.4507 -6.9407 5.9252 22 1 -0.3633 0.0754 1.0249 23 1 -0.3634 0.8499 -0.5777 24 1 -0.3634 -0.9253 -0.4471 25 1 -0.0461 3.0774 1.4135 26 1 3.1499 -1.1381 -0.5144 27 1 1.6084 -2.0282 -0.5146 28 1 1.5001 -1.8414 1.9556 29 1 3.0416 -0.9515 1.9558 30 1 4.1695 -2.9061 0.9272 31 1 2.6276 -3.7954 0.9273 32 1 3.1454 -2.9145 3.5598 33 1 4.0153 -4.4266 5.2759 34 1 5.0468 -7.5425 2.9886 35 1 6.6855 -7.1117 3.6432 36 1 6.2203 -8.9038 5.2490 37 1 4.4239 -8.6979 5.0519 38 1 6.4546 -6.6839 6.2633 39 1 4.7170 -6.9314 6.7313 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731235938.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:25:02 Heat of formation + Delta-G solvation = 17.263279 kcal Electronic energy + Delta-G solvation = -17779.751317 eV Core-core repulsion = 14917.052510 eV Total energy + Delta-G solvation = -2862.698807 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.78243 -38.41848 -36.17286 -34.62364 -32.07111 -31.04558 -29.66622 -26.03368 -25.94675 -25.41746 -23.35971 -21.82919 -20.78495 -20.10674 -18.28423 -16.86664 -16.73078 -15.99487 -15.72028 -15.23392 -14.86657 -14.42860 -13.97252 -13.90725 -13.29276 -12.95025 -12.70240 -12.63738 -12.17887 -11.94094 -11.59369 -11.27169 -11.23714 -11.04460 -10.81274 -10.73415 -10.68024 -10.46580 -10.08593 -9.90527 -9.75584 -9.60703 -9.37234 -8.78654 -8.53363 -6.75135 -5.71195 -3.16883 1.28406 3.32804 3.38978 3.39890 3.44634 3.46025 4.20849 4.28920 4.51194 4.51888 4.85125 5.06504 5.27536 5.30965 5.37441 5.45169 5.47198 5.55102 5.57475 5.76743 5.88416 5.97059 5.98939 6.08096 6.16956 6.29633 6.45053 6.48191 6.69534 6.79090 6.86344 7.04290 7.40896 7.71750 7.74452 7.82319 8.39125 8.42178 9.25819 9.89194 10.38100 11.34004 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.042323 B = 0.003189 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.427114 B = 8778.630831 C = 8985.651025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.603 5.603 3 C -0.254 4.254 4 H 0.068 0.932 5 C 0.000 4.000 6 N -0.910 5.910 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.156 3.844 12 C -0.150 4.150 13 C 0.121 3.879 14 N -0.722 5.722 15 C 0.545 3.455 16 O -0.550 6.550 17 C -0.196 4.196 18 C -0.068 4.068 19 C -0.105 4.105 20 C -0.143 4.143 21 C -0.108 4.108 22 H 0.027 0.973 23 H 0.044 0.956 24 H -0.004 1.004 25 H 0.252 0.748 26 H 0.045 0.955 27 H 0.039 0.961 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.401 0.599 33 H 0.132 0.868 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.434 -16.697 9.021 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.326 5.326 3 C -0.383 4.383 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.555 5.555 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.028 3.972 12 C -0.191 4.191 13 C -0.003 4.003 14 N -0.373 5.373 15 C 0.333 3.667 16 O -0.429 6.429 17 C -0.216 4.216 18 C -0.070 4.070 19 C -0.142 4.142 20 C -0.180 4.180 21 C -0.145 4.145 22 H 0.045 0.955 23 H 0.063 0.937 24 H 0.015 0.985 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.235 0.765 33 H 0.150 0.850 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.118 0.882 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.566 -17.006 8.377 20.412 hybrid contribution 0.108 1.405 0.504 1.497 sum 7.674 -15.601 8.880 19.523 Atomic orbital electron populations 1.20799 0.82518 0.95584 0.99211 1.43977 1.01966 1.00713 1.85914 1.19195 0.97954 0.85474 1.35711 0.91413 1.25033 0.97724 0.98524 0.98506 1.70051 1.17883 1.27138 1.40473 0.86326 0.78477 0.83753 0.77913 1.21076 1.21655 1.20972 1.20712 0.95947 0.88197 0.92311 1.22547 0.99605 0.94047 1.02890 1.21488 1.00203 0.97008 0.81623 1.46069 1.57821 1.23464 1.09901 1.18439 0.78077 0.81038 0.89116 1.90751 1.51858 1.54134 1.46193 1.21677 1.06630 0.97239 0.96087 1.23428 0.92650 0.91906 0.99005 1.22203 1.01431 0.92614 0.97956 1.22737 1.02574 0.95925 0.96795 1.22349 1.02149 0.94551 0.95482 0.95460 0.93693 0.98508 0.93745 0.93645 0.94296 0.92200 0.91314 0.91846 0.92029 0.76485 0.85035 0.89522 0.88530 0.90486 0.89773 0.88208 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.08 9.01 59.84 0.54 4.61 16 2 N -0.60 -15.30 2.92 -181.13 -0.53 -15.83 16 3 C -0.25 -7.00 9.67 -15.06 -0.15 -7.15 16 4 H 0.07 1.83 7.84 -52.49 -0.41 1.42 16 5 C 0.00 0.00 5.13 -17.43 -0.09 -0.09 16 6 N -0.91 -26.53 10.58 55.49 0.59 -25.94 16 7 Si 0.91 21.90 29.57 -169.99 -5.03 16.88 16 8 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 C 0.16 3.20 5.71 -4.05 -0.02 3.18 16 12 C -0.15 -2.70 5.65 -26.73 -0.15 -2.85 16 13 C 0.12 1.89 5.67 -4.04 -0.02 1.87 16 14 N -0.72 -10.13 5.55 -61.49 -0.34 -10.48 16 15 C 0.54 8.04 7.76 -12.66 -0.10 7.94 16 16 O -0.55 -9.85 15.15 5.26 0.08 -9.77 16 17 C -0.20 -2.24 10.03 -37.81 -0.38 -2.62 16 18 C -0.07 -0.71 6.93 -100.48 -0.70 -1.41 16 19 C -0.11 -1.06 6.99 -27.56 -0.19 -1.25 16 20 C -0.14 -1.05 8.17 -26.18 -0.21 -1.26 16 21 C -0.11 -0.79 7.96 -27.39 -0.22 -1.01 16 22 H 0.03 0.72 7.42 -51.93 -0.39 0.34 16 23 H 0.04 1.20 7.19 -51.93 -0.37 0.83 16 24 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 25 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 27 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 28 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.40 4.78 8.46 -40.82 -0.35 4.44 16 33 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.09 1.04 7.49 -51.93 -0.39 0.65 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 325.56 15.07 4.91 4.91 Total: -1.00 -31.91 325.56 -8.51 -40.43 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -6.50 Total: -0.15 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -1.69 Total: -0.05 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.28 Total: -52.24 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.91 -8.51 -40.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731235938.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.691 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds