Wall clock time and date at job start Sun Mar 29 2020 23:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 120.00032 * 2 1 4 4 C 1.53002 * 109.46927 * 270.00324 * 3 2 1 5 5 N 1.46504 * 109.47267 * 180.02562 * 4 3 2 6 6 C 1.36935 * 119.99884 * 179.97438 * 5 4 3 7 7 H 1.08004 * 120.00195 * 359.97438 * 6 5 4 8 8 C 1.38809 * 120.00017 * 179.97438 * 6 5 4 9 9 N 1.31625 * 119.99759 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00311 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47586 * 59.99294 * 10 8 6 12 12 H 1.48500 * 109.47484 * 180.02562 * 10 8 6 13 13 H 1.48509 * 109.47036 * 299.99434 * 10 8 6 14 14 C 1.34775 * 120.00077 * 179.97438 * 2 1 3 15 15 O 1.21273 * 120.00170 * 176.27423 * 14 2 1 16 16 C 1.50707 * 119.99814 * 356.55066 * 14 2 1 17 17 H 1.09005 * 109.63831 * 316.94737 * 16 14 2 18 18 C 1.53016 * 109.64600 * 77.37113 * 16 14 2 19 19 C 1.50066 * 110.15150 * 169.11758 * 18 16 14 20 20 C 1.29438 * 124.07263 * 342.87687 * 19 18 16 21 21 C 1.50070 * 124.07819 * 0.48655 * 20 19 18 22 22 C 1.53040 * 110.13907 * 342.83135 * 21 20 19 23 23 H 1.09001 * 109.46769 * 264.66825 * 1 2 3 24 24 H 1.08997 * 109.46696 * 24.66498 * 1 2 3 25 25 H 1.08997 * 109.47118 * 144.66646 * 1 2 3 26 26 H 1.08996 * 109.47504 * 29.99553 * 3 2 1 27 27 H 1.08998 * 109.47140 * 150.00193 * 3 2 1 28 28 H 1.09006 * 109.46781 * 299.99515 * 4 3 2 29 29 H 1.09000 * 109.47661 * 59.99292 * 4 3 2 30 30 H 0.96993 * 119.99935 * 359.97438 * 5 4 3 31 31 H 0.97006 * 120.00118 * 180.02562 * 9 8 6 32 32 H 1.09004 * 109.35754 * 289.33153 * 18 16 14 33 33 H 1.09004 * 109.35199 * 49.04700 * 18 16 14 34 34 H 1.08004 * 117.96442 * 162.84543 * 19 18 16 35 35 H 1.07999 * 117.96321 * 180.46731 * 20 19 18 36 36 H 1.08993 * 109.36013 * 103.05645 * 21 20 19 37 37 H 1.09008 * 109.35835 * 222.64486 * 21 20 19 38 38 H 1.08999 * 109.65705 * 289.78176 * 22 21 20 39 39 H 1.08999 * 109.63944 * 169.14023 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1855 2.9788 -1.4426 6 6 3.5283 3.5714 -2.6286 7 1 3.2587 3.1035 -3.5639 8 6 4.2224 4.7735 -2.6287 9 7 4.5506 5.3440 -1.4888 10 14 4.6907 5.5815 -4.2464 11 1 3.4620 5.8767 -5.0263 12 1 5.4211 6.8457 -3.9752 13 1 5.5621 4.6642 -5.0240 14 6 2.1390 -1.1672 0.0005 15 8 3.3498 -1.1683 -0.0677 16 6 1.3874 -2.4711 0.0796 17 1 0.5922 -2.3912 0.8208 18 6 0.7850 -2.8015 -1.2876 19 6 0.2650 -4.2091 -1.2969 20 6 0.5944 -5.1097 -0.4275 21 6 1.5343 -4.8691 0.7173 22 6 2.3511 -3.5987 0.4705 23 1 -0.3633 -0.0955 1.0232 24 1 -0.3632 0.9339 -0.4289 25 1 -0.3633 -0.8383 -0.5943 26 1 1.6085 2.0284 0.5137 27 1 3.1500 1.1384 0.5138 28 1 3.0416 0.9507 -1.9564 29 1 1.5001 1.8406 -1.9564 30 1 3.4280 3.3989 -0.6027 31 1 5.0354 6.1843 -1.4888 32 1 -0.0331 -2.1125 -1.4980 33 1 1.5520 -2.6966 -2.0551 34 1 -0.4277 -4.4879 -2.0773 35 1 0.1660 -6.0955 -0.5324 36 1 0.9615 -4.7576 1.6378 37 1 2.2096 -5.7193 0.8151 38 1 3.0612 -3.7706 -0.3384 39 1 2.8861 -3.3247 1.3798 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731891704.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:39 Heat of formation + Delta-G solvation = -14.117675 kcal Electronic energy + Delta-G solvation = -18597.516415 eV Core-core repulsion = 15733.456828 eV Total energy + Delta-G solvation = -2864.059587 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.31945 -37.83612 -35.84523 -34.32522 -31.89053 -31.10370 -30.82942 -28.13963 -26.50603 -24.33425 -23.50722 -22.59449 -21.27718 -19.07492 -18.11839 -17.16244 -17.00091 -16.30502 -15.52758 -15.22589 -14.44214 -14.30320 -13.91768 -13.55113 -13.47199 -13.30801 -13.09614 -12.85501 -12.72118 -12.47971 -12.34694 -12.10618 -11.22660 -11.10887 -10.97121 -10.91023 -10.82998 -10.63002 -10.54137 -10.11461 -9.73219 -9.45841 -9.20973 -8.83487 -8.44393 -6.89765 -5.72853 -3.01975 2.05843 2.77219 3.13829 3.47301 3.51226 3.52811 4.35259 4.49165 4.62570 4.66105 4.88402 5.00189 5.05233 5.14836 5.24967 5.33035 5.34158 5.46379 5.53563 5.60776 5.66464 5.66647 5.77804 5.86114 5.89087 6.01048 6.07798 6.15331 6.18776 6.41602 6.61077 6.70951 6.78820 6.96573 7.56165 7.72833 8.35733 8.45965 9.56475 10.13086 10.48296 11.50102 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.040091 B = 0.003928 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.246606 B = 7126.621246 C = 7216.344662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.612 5.612 3 C 0.107 3.893 4 C 0.143 3.857 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.069 0.931 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.513 3.487 15 O -0.531 6.531 16 C -0.104 4.104 17 H 0.093 0.907 18 C -0.086 4.086 19 C -0.151 4.151 20 C -0.157 4.157 21 C -0.092 4.092 22 C -0.100 4.100 23 H 0.054 0.946 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.023 0.977 29 H 0.017 0.983 30 H 0.384 0.616 31 H 0.256 0.744 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.406 -19.513 5.312 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.346 5.346 3 C -0.015 4.015 4 C 0.015 3.985 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.087 0.913 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.740 3.260 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.301 3.699 15 O -0.407 6.407 16 C -0.126 4.126 17 H 0.111 0.889 18 C -0.123 4.123 19 C -0.170 4.170 20 C -0.175 4.175 21 C -0.129 4.129 22 C -0.138 4.138 23 H 0.072 0.928 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.041 0.959 29 H 0.035 0.965 30 H 0.217 0.783 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.736 -19.463 5.107 23.294 hybrid contribution 0.150 0.680 -0.684 0.976 sum -11.586 -18.783 4.423 22.508 Atomic orbital electron populations 1.21969 0.79885 1.03738 1.01572 1.47835 1.06838 1.06347 1.73530 1.21710 0.97385 0.83313 0.99118 1.20907 0.95023 0.89355 0.93251 1.42209 1.67079 1.21690 1.06560 1.19170 1.29454 1.02352 0.85970 0.91271 1.24746 1.01266 0.98049 0.96933 1.69656 1.45066 1.19583 1.23999 0.86234 0.78130 0.78639 0.82990 1.21268 1.21639 1.21230 1.20602 0.88004 0.85102 0.76228 1.90728 1.14086 1.87158 1.48684 1.21374 0.99006 0.92890 0.99295 0.88880 1.20518 1.00725 0.94936 0.96088 1.21998 1.00558 0.94914 0.99486 1.22075 0.99425 0.98900 0.97101 1.20497 0.97228 0.98123 0.97027 1.21438 0.96983 0.92651 1.02769 0.92770 0.90398 0.90918 0.90559 0.89860 0.95914 0.96516 0.78282 0.93447 0.89996 0.89990 0.87608 0.87956 0.90866 0.90753 0.90712 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 9.79 59.85 0.59 1.30 16 2 N -0.61 -8.87 2.87 -181.57 -0.52 -9.40 16 3 C 0.11 1.91 5.47 -4.04 -0.02 1.89 16 4 C 0.14 3.13 6.58 -4.04 -0.03 3.10 16 5 N -0.73 -19.57 5.60 -59.90 -0.34 -19.91 16 6 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 7 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -29.01 13.06 55.49 0.72 -28.28 16 10 Si 0.91 23.01 29.55 -169.99 -5.02 17.99 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 14 C 0.51 7.86 6.86 -10.98 -0.08 7.79 16 15 O -0.53 -10.54 15.77 5.56 0.09 -10.45 16 16 C -0.10 -1.15 1.76 -91.56 -0.16 -1.31 16 17 H 0.09 0.86 7.57 -51.93 -0.39 0.46 16 18 C -0.09 -0.85 5.19 -28.18 -0.15 -0.99 16 19 C -0.15 -1.29 9.80 -35.90 -0.35 -1.64 16 20 C -0.16 -1.28 9.80 -35.90 -0.35 -1.63 16 21 C -0.09 -0.75 6.12 -28.17 -0.17 -0.92 16 22 C -0.10 -1.09 4.63 -26.51 -0.12 -1.21 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.08 0.78 8.03 -51.93 -0.42 0.36 16 25 H 0.07 0.60 4.62 -51.93 -0.24 0.36 16 26 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 27 H 0.08 1.65 7.48 -51.93 -0.39 1.26 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.38 10.63 7.67 -40.82 -0.31 10.32 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.08 0.70 5.65 -51.93 -0.29 0.41 16 33 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 34 H 0.11 0.76 8.06 -52.48 -0.42 0.34 16 35 H 0.10 0.69 8.06 -52.49 -0.42 0.26 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.07 0.93 8.12 -51.93 -0.42 0.50 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 316.07 15.07 4.76 4.76 Total: -1.00 -34.08 316.07 -7.63 -41.71 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -6.23 Total: 4.85 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.09 Total: -1.28 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: -0.13 Total: -57.59 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.08 -7.63 -41.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731891704.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.595 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds