Wall clock time and date at job start Sun Mar 29 2020 23:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 120.00032 * 2 1 4 4 C 1.53002 * 109.46927 * 270.00324 * 3 2 1 5 5 N 1.46504 * 109.47267 * 180.02562 * 4 3 2 6 6 C 1.36935 * 119.99884 * 179.97438 * 5 4 3 7 7 H 1.08004 * 120.00195 * 359.97438 * 6 5 4 8 8 C 1.38809 * 120.00017 * 179.97438 * 6 5 4 9 9 N 1.31625 * 119.99759 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00311 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47586 * 59.99294 * 10 8 6 12 12 H 1.48500 * 109.47484 * 180.02562 * 10 8 6 13 13 H 1.48509 * 109.47036 * 299.99434 * 10 8 6 14 14 C 1.34775 * 120.00077 * 179.97438 * 2 1 3 15 15 O 1.21273 * 120.00170 * 176.27423 * 14 2 1 16 16 C 1.50707 * 119.99814 * 356.55066 * 14 2 1 17 17 H 1.09005 * 109.63831 * 316.94737 * 16 14 2 18 18 C 1.53016 * 109.64600 * 77.37113 * 16 14 2 19 19 C 1.50066 * 110.15150 * 169.11758 * 18 16 14 20 20 C 1.29438 * 124.07263 * 342.87687 * 19 18 16 21 21 C 1.50070 * 124.07819 * 0.48655 * 20 19 18 22 22 C 1.53040 * 110.13907 * 342.83135 * 21 20 19 23 23 H 1.09001 * 109.46769 * 264.66825 * 1 2 3 24 24 H 1.08997 * 109.46696 * 24.66498 * 1 2 3 25 25 H 1.08997 * 109.47118 * 144.66646 * 1 2 3 26 26 H 1.08996 * 109.47504 * 29.99553 * 3 2 1 27 27 H 1.08998 * 109.47140 * 150.00193 * 3 2 1 28 28 H 1.09006 * 109.46781 * 299.99515 * 4 3 2 29 29 H 1.09000 * 109.47661 * 59.99292 * 4 3 2 30 30 H 0.96993 * 119.99935 * 359.97438 * 5 4 3 31 31 H 0.97006 * 120.00118 * 180.02562 * 9 8 6 32 32 H 1.09004 * 109.35754 * 289.33153 * 18 16 14 33 33 H 1.09004 * 109.35199 * 49.04700 * 18 16 14 34 34 H 1.08004 * 117.96442 * 162.84543 * 19 18 16 35 35 H 1.07999 * 117.96321 * 180.46731 * 20 19 18 36 36 H 1.08993 * 109.36013 * 103.05645 * 21 20 19 37 37 H 1.09008 * 109.35835 * 222.64486 * 21 20 19 38 38 H 1.08999 * 109.65705 * 289.78176 * 22 21 20 39 39 H 1.08999 * 109.63944 * 169.14023 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1855 2.9788 -1.4426 6 6 3.5283 3.5714 -2.6286 7 1 3.2587 3.1035 -3.5639 8 6 4.2224 4.7735 -2.6287 9 7 4.5506 5.3440 -1.4888 10 14 4.6907 5.5815 -4.2464 11 1 3.4620 5.8767 -5.0263 12 1 5.4211 6.8457 -3.9752 13 1 5.5621 4.6642 -5.0240 14 6 2.1390 -1.1672 0.0005 15 8 3.3498 -1.1683 -0.0677 16 6 1.3874 -2.4711 0.0796 17 1 0.5922 -2.3912 0.8208 18 6 0.7850 -2.8015 -1.2876 19 6 0.2650 -4.2091 -1.2969 20 6 0.5944 -5.1097 -0.4275 21 6 1.5343 -4.8691 0.7173 22 6 2.3511 -3.5987 0.4705 23 1 -0.3633 -0.0955 1.0232 24 1 -0.3632 0.9339 -0.4289 25 1 -0.3633 -0.8383 -0.5943 26 1 1.6085 2.0284 0.5137 27 1 3.1500 1.1384 0.5138 28 1 3.0416 0.9507 -1.9564 29 1 1.5001 1.8406 -1.9564 30 1 3.4280 3.3989 -0.6027 31 1 5.0354 6.1843 -1.4888 32 1 -0.0331 -2.1125 -1.4980 33 1 1.5520 -2.6966 -2.0551 34 1 -0.4277 -4.4879 -2.0773 35 1 0.1660 -6.0955 -0.5324 36 1 0.9615 -4.7576 1.6378 37 1 2.2096 -5.7193 0.8151 38 1 3.0612 -3.7706 -0.3384 39 1 2.8861 -3.3247 1.3798 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731891704.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:39 Heat of formation + Delta-G solvation = -36.550607 kcal Electronic energy + Delta-G solvation = -18598.489180 eV Core-core repulsion = 15733.456828 eV Total energy + Delta-G solvation = -2865.032352 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.43644 -38.75698 -37.35383 -36.10900 -33.55523 -32.24566 -31.73004 -29.73662 -27.59508 -26.01709 -24.49904 -23.89612 -22.79937 -20.26362 -19.21942 -18.89515 -18.07184 -17.36842 -16.89061 -16.43362 -16.19231 -15.48285 -15.25967 -15.05284 -14.81852 -14.62572 -14.15853 -14.13549 -13.69727 -13.32842 -13.27339 -13.09317 -13.01417 -12.84003 -12.69039 -12.32597 -12.18564 -11.96276 -11.89127 -11.68686 -11.32712 -10.99581 -10.66121 -9.85226 -9.69394 -9.09477 -7.99783 -5.31115 1.43008 1.44658 1.49183 1.55173 1.58903 1.96809 2.54452 3.33043 3.42511 3.72037 3.80993 4.02276 4.03991 4.19688 4.24260 4.27122 4.29680 4.41044 4.47106 4.52996 4.62205 4.63573 4.76399 4.85728 4.93354 4.99184 5.04021 5.08939 5.13968 5.25882 5.33707 5.40426 5.53648 5.79323 6.07891 6.21483 6.40373 7.16025 7.27495 7.98798 8.24742 9.23437 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.040091 B = 0.003928 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.246606 B = 7126.621246 C = 7216.344662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.610 5.610 3 C 0.121 3.879 4 C 0.150 3.850 5 N -0.743 5.743 6 C -0.255 4.255 7 H 0.072 0.928 8 C -0.072 4.072 9 N -0.968 5.968 10 Si 0.979 3.021 11 H -0.272 1.272 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.505 3.495 15 O -0.588 6.588 16 C -0.094 4.094 17 H 0.122 0.878 18 C -0.084 4.084 19 C -0.160 4.160 20 C -0.155 4.155 21 C -0.088 4.088 22 C -0.103 4.103 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.056 0.944 28 H -0.004 1.004 29 H 0.031 0.969 30 H 0.376 0.624 31 H 0.254 0.746 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.761 -20.705 5.041 25.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.342 5.342 3 C -0.003 4.003 4 C 0.022 3.978 5 N -0.387 5.387 6 C -0.386 4.386 7 H 0.090 0.910 8 C -0.265 4.265 9 N -0.618 5.618 10 Si 0.807 3.193 11 H -0.198 1.198 12 H -0.216 1.216 13 H -0.207 1.207 14 C 0.295 3.705 15 O -0.468 6.468 16 C -0.115 4.115 17 H 0.140 0.860 18 C -0.121 4.121 19 C -0.178 4.178 20 C -0.173 4.173 21 C -0.125 4.125 22 C -0.141 4.141 23 H 0.100 0.900 24 H 0.099 0.901 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.075 0.925 28 H 0.014 0.986 29 H 0.049 0.951 30 H 0.208 0.792 31 H 0.063 0.937 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.158 -20.690 4.830 25.531 hybrid contribution 0.878 1.002 -0.577 1.452 sum -13.279 -19.687 4.253 24.125 Atomic orbital electron populations 1.22306 0.76610 1.04935 1.03889 1.47946 1.08738 1.04821 1.72721 1.21349 0.97285 0.85514 0.96164 1.20944 0.94226 0.86707 0.95906 1.42395 1.67630 1.23050 1.05615 1.19565 1.29420 1.02740 0.86923 0.90959 1.25646 1.01476 0.98750 1.00601 1.69817 1.45887 1.19881 1.26219 0.85136 0.78100 0.77301 0.78748 1.19793 1.21626 1.20670 1.21496 0.87632 0.86579 0.74791 1.90699 1.16788 1.88010 1.51273 1.21401 0.99089 0.90047 1.00954 0.85969 1.20502 1.00432 0.96753 0.94368 1.22035 1.01364 0.93957 1.00475 1.22271 0.98766 0.99677 0.96578 1.20505 0.97273 0.96661 0.98018 1.21431 0.97048 0.94294 1.01295 0.90031 0.90104 0.88717 0.88541 0.92528 0.98551 0.95137 0.79246 0.93705 0.88344 0.92532 0.85924 0.85926 0.89100 0.89807 0.93225 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.09 9.79 127.77 1.25 2.34 16 2 N -0.61 -17.22 2.87 -846.76 -2.43 -19.65 16 3 C 0.12 4.35 5.47 86.38 0.47 4.82 16 4 C 0.15 6.67 6.58 86.38 0.57 7.23 16 5 N -0.74 -40.69 5.60 -343.43 -1.92 -42.61 16 6 C -0.25 -15.09 9.99 84.03 0.84 -14.25 16 7 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 8 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 9 N -0.97 -60.91 13.06 21.65 0.28 -60.63 16 10 Si 0.98 47.40 29.55 68.60 2.03 49.42 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 13 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 14 C 0.51 15.60 6.86 87.66 0.60 16.20 16 15 O -0.59 -24.61 15.77 -3.01 -0.05 -24.66 16 16 C -0.09 -1.94 1.76 -11.40 -0.02 -1.96 16 17 H 0.12 1.84 7.57 -2.38 -0.02 1.82 16 18 C -0.08 -1.51 5.19 29.65 0.15 -1.36 16 19 C -0.16 -2.31 9.80 27.04 0.27 -2.04 16 20 C -0.16 -2.05 9.80 27.04 0.27 -1.79 16 21 C -0.09 -1.24 6.12 29.66 0.18 -1.05 16 22 C -0.10 -2.19 4.63 30.74 0.14 -2.05 16 23 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.08 1.38 8.03 -2.39 -0.02 1.36 16 25 H 0.09 1.21 4.62 -2.39 -0.01 1.20 16 26 H 0.10 3.07 8.07 -2.39 -0.02 3.05 16 27 H 0.06 2.34 7.48 -2.39 -0.02 2.33 16 28 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.38 21.43 7.67 -92.71 -0.71 20.71 16 31 H 0.25 15.38 8.31 -92.70 -0.77 14.61 16 32 H 0.10 1.41 5.65 -2.39 -0.01 1.39 16 33 H 0.06 1.32 8.10 -2.38 -0.02 1.30 16 34 H 0.12 1.37 8.06 -2.91 -0.02 1.35 16 35 H 0.12 1.18 8.06 -2.91 -0.02 1.15 16 36 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.05 1.29 8.12 -2.39 -0.02 1.27 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -75.72 316.07 3.41 -72.31 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.32 Total: 23.58 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 5.19 Total: 2.24 kcal Atomic # 7 Polarization: -118.82 SS G_CDS: -4.07 Total: -122.89 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.05 Total: -24.66 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.42 kcal Total: -75.72 3.41 -72.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731891704.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.761 kcal (2) G-P(sol) polarization free energy of solvation -75.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds