Wall clock time and date at job start Sun Mar 29 2020 23:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36944 * 119.99950 * 2 1 4 4 H 1.07998 * 119.99688 * 162.46175 * 3 2 1 5 5 C 1.38814 * 119.99634 * 342.45725 * 3 2 1 6 6 N 1.31616 * 120.00545 * 344.98182 * 5 3 2 7 7 Si 1.86804 * 119.99562 * 164.97963 * 5 3 2 8 8 H 1.48497 * 109.46880 * 89.99890 * 7 5 3 9 9 H 1.48497 * 109.47173 * 210.00255 * 7 5 3 10 10 H 1.48498 * 109.47068 * 330.00296 * 7 5 3 11 11 C 1.46500 * 119.99878 * 180.27314 * 2 1 3 12 12 C 1.52995 * 109.47101 * 269.72388 * 11 2 1 13 13 C 1.52997 * 109.47058 * 180.02562 * 12 11 2 14 14 N 1.46507 * 109.47296 * 180.02562 * 13 12 11 15 15 C 1.34780 * 119.99931 * 179.97438 * 14 13 12 16 16 O 1.21278 * 119.99863 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99596 * 180.02562 * 15 14 13 18 18 H 1.08995 * 115.55181 * 34.28064 * 17 15 14 19 19 C 1.53003 * 117.49491 * 248.60731 * 17 15 14 20 20 C 1.52994 * 117.49375 * 179.97438 * 17 15 14 21 21 C 1.52991 * 138.59142 * 336.59731 * 20 17 15 22 22 C 1.52994 * 138.58928 * 238.37404 * 20 17 15 23 23 H 1.08995 * 109.47530 * 84.96037 * 1 2 3 24 24 H 1.09003 * 109.47225 * 204.96889 * 1 2 3 25 25 H 1.09007 * 109.46774 * 324.96040 * 1 2 3 26 26 H 0.96994 * 120.00348 * 180.02562 * 6 5 3 27 27 H 1.09002 * 109.46868 * 29.72492 * 11 2 1 28 28 H 1.09003 * 109.46540 * 149.72413 * 11 2 1 29 29 H 1.09002 * 109.47345 * 299.99812 * 12 11 2 30 30 H 1.09001 * 109.47541 * 60.00023 * 12 11 2 31 31 H 1.08998 * 109.47421 * 299.99810 * 13 12 11 32 32 H 1.08997 * 109.47401 * 59.99932 * 13 12 11 33 33 H 0.96997 * 119.99931 * 359.97438 * 14 13 12 34 34 H 1.09003 * 117.50250 * 0.02562 * 19 17 15 35 35 H 1.08999 * 117.49797 * 145.00357 * 19 17 15 36 36 H 1.08999 * 117.49686 * 336.59222 * 21 20 17 37 37 H 1.08996 * 117.50060 * 121.62281 * 21 20 17 38 38 H 1.08993 * 117.50283 * 238.39345 * 22 20 17 39 39 H 1.09005 * 117.49273 * 23.38727 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1921 1.2077 0.2819 5 6 1.5040 2.3601 -0.3624 6 7 0.3438 2.3091 -0.9817 7 14 2.2818 4.0128 0.0291 8 1 3.1478 4.4325 -1.1018 9 1 1.2153 5.0248 0.2381 10 1 3.1007 3.8948 1.2622 11 6 2.1975 -1.2687 -0.0060 12 6 2.4585 -1.7138 1.4343 13 6 3.2240 -3.0385 1.4279 14 7 3.4734 -3.4650 2.8072 15 6 4.1369 -4.6132 3.0479 16 8 4.5270 -5.2935 2.1228 17 6 4.3929 -5.0522 4.4667 18 1 3.6110 -4.8034 5.1841 19 6 5.8401 -5.0297 4.9628 20 6 5.1507 -6.3650 4.6740 21 6 5.4324 -7.6603 3.9100 22 6 4.9374 -7.7175 5.3566 23 1 -0.3634 0.0903 -1.0236 24 1 -0.3634 -0.9316 0.4338 25 1 -0.3633 0.8415 0.5901 26 1 -0.1072 3.1295 -1.2352 27 1 1.6062 -2.0271 -0.5192 28 1 3.1478 -1.1371 -0.5236 29 1 3.0498 -0.9554 1.9475 30 1 1.5083 -1.8453 1.9518 31 1 2.6332 -3.7971 0.9147 32 1 4.1743 -2.9065 0.9106 33 1 3.1611 -2.9210 3.5470 34 1 6.6070 -4.6971 4.2632 35 1 6.0102 -4.7663 6.0067 36 1 4.7304 -7.9451 3.1263 37 1 6.4749 -7.9185 3.7243 38 1 5.6543 -8.0133 6.1226 39 1 3.9098 -8.0397 5.5250 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752069457.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:25:05 Heat of formation + Delta-G solvation = 39.272822 kcal Electronic energy + Delta-G solvation = -17853.227176 eV Core-core repulsion = 14991.482775 eV Total energy + Delta-G solvation = -2861.744401 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.99596 -37.73470 -36.19447 -34.69461 -32.90033 -31.91883 -29.91737 -26.13378 -25.67322 -23.73423 -22.60852 -21.81496 -20.77306 -20.15333 -19.15542 -17.07188 -16.73036 -15.96409 -15.46569 -15.20421 -14.97362 -14.78023 -14.16425 -13.95064 -13.37657 -12.91653 -12.69693 -12.62925 -11.97147 -11.72223 -11.63851 -11.41159 -11.01478 -10.80226 -10.76730 -10.47964 -10.44318 -10.33917 -10.22876 -10.17272 -9.86034 -9.81263 -9.69805 -8.94311 -8.52011 -6.79325 -5.71367 -3.13167 2.47496 3.04446 3.38551 3.44960 3.46855 3.51106 3.66001 4.06740 4.50890 4.54995 4.61132 4.91810 5.18992 5.24736 5.34139 5.37961 5.42004 5.44197 5.44797 5.46876 5.71014 5.72173 5.82969 5.91016 5.95905 6.10481 6.20228 6.41476 6.59602 6.75348 6.76939 6.93819 7.43243 7.58393 7.72275 7.82871 8.28452 8.38984 9.25044 9.89578 10.36491 11.34224 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.043715 B = 0.003276 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.365765 B = 8545.958360 C = 8886.223704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.605 5.605 3 C -0.253 4.253 4 H 0.070 0.930 5 C -0.003 4.003 6 N -0.910 5.910 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.290 1.290 10 H -0.281 1.281 11 C 0.156 3.844 12 C -0.150 4.150 13 C 0.121 3.879 14 N -0.723 5.723 15 C 0.536 3.464 16 O -0.539 6.539 17 C -0.142 4.142 18 H 0.123 0.877 19 C -0.101 4.101 20 C -0.202 4.202 21 C -0.113 4.113 22 C -0.131 4.131 23 H 0.027 0.973 24 H -0.004 1.004 25 H 0.046 0.954 26 H 0.252 0.748 27 H 0.038 0.962 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.401 0.599 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.284 -15.783 13.151 21.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.328 5.328 3 C -0.382 4.382 4 H 0.088 0.912 5 C -0.200 4.200 6 N -0.556 5.556 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.216 1.216 10 H -0.206 1.206 11 C 0.027 3.973 12 C -0.191 4.191 13 C -0.003 4.003 14 N -0.374 5.374 15 C 0.322 3.678 16 O -0.416 6.416 17 C -0.163 4.163 18 H 0.141 0.859 19 C -0.138 4.138 20 C -0.203 4.203 21 C -0.150 4.150 22 C -0.168 4.168 23 H 0.045 0.955 24 H 0.014 0.986 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.235 0.765 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.420 -16.101 12.378 21.622 hybrid contribution 0.050 1.390 0.572 1.504 sum 7.470 -14.711 12.950 20.974 Atomic orbital electron populations 1.20806 0.82440 0.95450 0.99376 1.43962 1.02001 1.00689 1.86139 1.19220 0.95366 0.84693 1.38956 0.91228 1.24928 0.97596 0.98251 0.99250 1.70107 1.17010 1.26350 1.42117 0.86267 0.78155 0.84009 0.78178 1.21489 1.21613 1.20630 1.20583 0.96270 0.88446 0.91973 1.22528 0.99482 0.94215 1.02863 1.21457 1.00302 0.96913 0.81631 1.46098 1.57873 1.23610 1.09844 1.19674 0.77699 0.80843 0.89605 1.90686 1.51132 1.54193 1.45595 1.21998 0.97798 1.00684 0.95786 0.85894 1.22663 0.92821 0.96294 1.02008 1.21146 1.05298 0.85170 1.08644 1.22592 1.02172 0.95892 0.94360 1.22763 1.02342 0.95334 0.96336 0.95483 0.98562 0.93480 0.93792 0.94387 0.93351 0.91502 0.92214 0.91861 0.91702 0.76539 0.88043 0.87608 0.88172 0.88562 0.88393 0.88567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.08 8.97 59.85 0.54 4.62 16 2 N -0.61 -15.30 2.93 -181.11 -0.53 -15.83 16 3 C -0.25 -6.97 9.70 -15.06 -0.15 -7.12 16 4 H 0.07 1.86 7.87 -52.49 -0.41 1.45 16 5 C 0.00 -0.08 5.08 -17.43 -0.09 -0.16 16 6 N -0.91 -26.78 10.51 55.49 0.58 -26.20 16 7 Si 0.90 21.89 29.58 -169.99 -5.03 16.86 16 8 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 9 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 C 0.16 3.15 5.65 -4.04 -0.02 3.13 16 12 C -0.15 -2.49 5.65 -26.74 -0.15 -2.64 16 13 C 0.12 1.78 5.67 -4.04 -0.02 1.75 16 14 N -0.72 -9.26 5.56 -60.29 -0.33 -9.59 16 15 C 0.54 7.37 7.61 -10.98 -0.08 7.28 16 16 O -0.54 -9.39 16.24 5.56 0.09 -9.30 16 17 C -0.14 -1.47 6.19 -91.77 -0.57 -2.04 16 18 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 19 C -0.10 -0.91 10.24 -26.72 -0.27 -1.18 16 20 C -0.20 -2.06 5.05 -154.51 -0.78 -2.84 16 21 C -0.11 -1.13 10.16 -26.73 -0.27 -1.40 16 22 C -0.13 -1.05 10.53 -26.73 -0.28 -1.33 16 23 H 0.03 0.73 7.48 -51.93 -0.39 0.34 16 24 H 0.00 -0.09 8.04 -51.93 -0.42 -0.51 16 25 H 0.05 1.26 7.01 -51.93 -0.36 0.89 16 26 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 28 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.40 4.17 8.47 -40.82 -0.35 3.83 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 329.50 15.07 4.97 4.97 Total: -1.00 -32.33 329.50 -8.96 -41.29 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -6.55 Total: -0.27 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -2.15 Total: -1.92 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -0.28 Total: -51.62 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.33 -8.96 -41.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752069457.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.565 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds