Wall clock time and date at job start Sun Mar 29 2020 23:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36944 * 119.99950 * 2 1 4 4 H 1.07998 * 119.99688 * 162.46175 * 3 2 1 5 5 C 1.38814 * 119.99634 * 342.45725 * 3 2 1 6 6 N 1.31616 * 120.00545 * 344.98182 * 5 3 2 7 7 Si 1.86804 * 119.99562 * 164.97963 * 5 3 2 8 8 H 1.48497 * 109.46880 * 89.99890 * 7 5 3 9 9 H 1.48497 * 109.47173 * 210.00255 * 7 5 3 10 10 H 1.48498 * 109.47068 * 330.00296 * 7 5 3 11 11 C 1.46500 * 119.99878 * 180.27314 * 2 1 3 12 12 C 1.52995 * 109.47101 * 269.72388 * 11 2 1 13 13 C 1.52997 * 109.47058 * 180.02562 * 12 11 2 14 14 N 1.46507 * 109.47296 * 180.02562 * 13 12 11 15 15 C 1.34780 * 119.99931 * 179.97438 * 14 13 12 16 16 O 1.21278 * 119.99863 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99596 * 180.02562 * 15 14 13 18 18 H 1.08995 * 115.55181 * 34.28064 * 17 15 14 19 19 C 1.53003 * 117.49491 * 248.60731 * 17 15 14 20 20 C 1.52994 * 117.49375 * 179.97438 * 17 15 14 21 21 C 1.52991 * 138.59142 * 336.59731 * 20 17 15 22 22 C 1.52994 * 138.58928 * 238.37404 * 20 17 15 23 23 H 1.08995 * 109.47530 * 84.96037 * 1 2 3 24 24 H 1.09003 * 109.47225 * 204.96889 * 1 2 3 25 25 H 1.09007 * 109.46774 * 324.96040 * 1 2 3 26 26 H 0.96994 * 120.00348 * 180.02562 * 6 5 3 27 27 H 1.09002 * 109.46868 * 29.72492 * 11 2 1 28 28 H 1.09003 * 109.46540 * 149.72413 * 11 2 1 29 29 H 1.09002 * 109.47345 * 299.99812 * 12 11 2 30 30 H 1.09001 * 109.47541 * 60.00023 * 12 11 2 31 31 H 1.08998 * 109.47421 * 299.99810 * 13 12 11 32 32 H 1.08997 * 109.47401 * 59.99932 * 13 12 11 33 33 H 0.96997 * 119.99931 * 359.97438 * 14 13 12 34 34 H 1.09003 * 117.50250 * 0.02562 * 19 17 15 35 35 H 1.08999 * 117.49797 * 145.00357 * 19 17 15 36 36 H 1.08999 * 117.49686 * 336.59222 * 21 20 17 37 37 H 1.08996 * 117.50060 * 121.62281 * 21 20 17 38 38 H 1.08993 * 117.50283 * 238.39345 * 22 20 17 39 39 H 1.09005 * 117.49273 * 23.38727 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1921 1.2077 0.2819 5 6 1.5040 2.3601 -0.3624 6 7 0.3438 2.3091 -0.9817 7 14 2.2818 4.0128 0.0291 8 1 3.1478 4.4325 -1.1018 9 1 1.2153 5.0248 0.2381 10 1 3.1007 3.8948 1.2622 11 6 2.1975 -1.2687 -0.0060 12 6 2.4585 -1.7138 1.4343 13 6 3.2240 -3.0385 1.4279 14 7 3.4734 -3.4650 2.8072 15 6 4.1369 -4.6132 3.0479 16 8 4.5270 -5.2935 2.1228 17 6 4.3929 -5.0522 4.4667 18 1 3.6110 -4.8034 5.1841 19 6 5.8401 -5.0297 4.9628 20 6 5.1507 -6.3650 4.6740 21 6 5.4324 -7.6603 3.9100 22 6 4.9374 -7.7175 5.3566 23 1 -0.3634 0.0903 -1.0236 24 1 -0.3634 -0.9316 0.4338 25 1 -0.3633 0.8415 0.5901 26 1 -0.1072 3.1295 -1.2352 27 1 1.6062 -2.0271 -0.5192 28 1 3.1478 -1.1371 -0.5236 29 1 3.0498 -0.9554 1.9475 30 1 1.5083 -1.8453 1.9518 31 1 2.6332 -3.7971 0.9147 32 1 4.1743 -2.9065 0.9106 33 1 3.1611 -2.9210 3.5470 34 1 6.6070 -4.6971 4.2632 35 1 6.0102 -4.7663 6.0067 36 1 4.7304 -7.9451 3.1263 37 1 6.4749 -7.9185 3.7243 38 1 5.6543 -8.0133 6.1226 39 1 3.9098 -8.0397 5.5250 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752069457.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:25:04 Heat of formation + Delta-G solvation = 19.403846 kcal Electronic energy + Delta-G solvation = -17854.088760 eV Core-core repulsion = 14991.482775 eV Total energy + Delta-G solvation = -2862.605985 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.00814 -38.62830 -37.86596 -36.13022 -33.91875 -33.43814 -31.58913 -27.99863 -27.32920 -24.96526 -23.28579 -23.25248 -22.17170 -21.35196 -20.04125 -18.74707 -18.04932 -17.21773 -16.70328 -16.61657 -15.90111 -15.82651 -15.56917 -15.27680 -14.96490 -14.60650 -14.51089 -13.52298 -13.37174 -13.05898 -12.80619 -12.66952 -12.60939 -12.48564 -12.35551 -12.30281 -12.07210 -11.83174 -11.51314 -11.19241 -11.09222 -10.94030 -10.77973 -10.59622 -10.09285 -8.83889 -7.82630 -5.26829 1.47070 1.47454 1.48327 1.58064 2.07471 2.52340 2.74615 2.88372 3.30913 3.34256 3.64697 3.79416 3.86088 4.09566 4.11738 4.28371 4.45569 4.50552 4.61365 4.64517 4.75384 4.77348 4.80323 4.81989 4.85076 4.92175 5.02086 5.04107 5.27161 5.27589 5.28324 5.44898 5.51041 5.61228 5.72993 6.31311 6.57089 7.15305 7.24582 7.88426 8.30261 9.21577 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.043715 B = 0.003276 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.365765 B = 8545.958360 C = 8886.223704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.623 5.623 3 C -0.260 4.260 4 H 0.074 0.926 5 C -0.060 4.060 6 N -0.943 5.943 7 Si 0.970 3.030 8 H -0.287 1.287 9 H -0.294 1.294 10 H -0.268 1.268 11 C 0.150 3.850 12 C -0.127 4.127 13 C 0.132 3.868 14 N -0.715 5.715 15 C 0.532 3.468 16 O -0.583 6.583 17 C -0.147 4.147 18 H 0.150 0.850 19 C -0.088 4.088 20 C -0.227 4.227 21 C -0.135 4.135 22 C -0.105 4.105 23 H -0.001 1.001 24 H 0.031 0.969 25 H 0.021 0.979 26 H 0.247 0.753 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.415 0.585 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.119 0.881 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.147 -16.301 15.501 23.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.346 5.346 3 C -0.390 4.390 4 H 0.092 0.908 5 C -0.254 4.254 6 N -0.591 5.591 7 Si 0.798 3.202 8 H -0.214 1.214 9 H -0.220 1.220 10 H -0.193 1.193 11 C 0.023 3.977 12 C -0.167 4.167 13 C 0.008 3.992 14 N -0.366 5.366 15 C 0.319 3.681 16 O -0.463 6.463 17 C -0.167 4.167 18 H 0.168 0.832 19 C -0.125 4.125 20 C -0.227 4.227 21 C -0.172 4.172 22 C -0.141 4.141 23 H 0.017 0.983 24 H 0.049 0.951 25 H 0.040 0.960 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.251 0.749 34 H 0.107 0.893 35 H 0.154 0.846 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.137 0.863 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.299 -16.637 14.767 23.743 hybrid contribution -0.194 1.459 -0.205 1.486 sum 8.106 -15.178 14.563 22.542 Atomic orbital electron populations 1.20556 0.82628 0.96094 0.97499 1.44227 1.02278 1.01765 1.86373 1.19576 0.95723 0.85800 1.37924 0.90774 1.25734 0.98374 1.01654 0.99664 1.70276 1.18473 1.26750 1.43556 0.85233 0.77160 0.79617 0.78199 1.21367 1.22018 1.19323 1.20771 0.95683 0.86854 0.94363 1.22149 0.99887 0.94734 0.99933 1.21161 0.99460 0.95761 0.82863 1.45966 1.57575 1.23687 1.09414 1.20312 0.76687 0.80271 0.90796 1.90668 1.52877 1.55447 1.47293 1.22038 0.99520 1.01303 0.93886 0.83213 1.22760 0.91350 0.95110 1.03246 1.21435 1.05821 0.85805 1.09669 1.22605 1.02167 0.96910 0.95487 1.22857 1.03223 0.92906 0.95123 0.98268 0.95065 0.95974 0.94336 0.93270 0.93841 0.92109 0.91599 0.92184 0.92609 0.74888 0.89267 0.84637 0.90162 0.88107 0.86253 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.83 8.97 127.77 1.15 9.98 16 2 N -0.62 -31.25 2.93 -726.92 -2.13 -33.38 16 3 C -0.26 -14.27 9.70 84.03 0.82 -13.45 16 4 H 0.07 3.91 7.87 -2.91 -0.02 3.89 16 5 C -0.06 -3.38 5.08 84.86 0.43 -2.95 16 6 N -0.94 -56.38 10.51 21.65 0.23 -56.15 16 7 Si 0.97 45.05 29.58 68.60 2.03 47.07 16 8 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 9 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 C 0.15 5.93 5.65 86.38 0.49 6.42 16 12 C -0.13 -3.99 5.65 30.59 0.17 -3.82 16 13 C 0.13 3.73 5.67 86.38 0.49 4.22 16 14 N -0.71 -17.08 5.56 -463.05 -2.57 -19.65 16 15 C 0.53 14.00 7.61 87.66 0.67 14.67 16 16 O -0.58 -20.33 16.24 -3.02 -0.05 -20.38 16 17 C -0.15 -2.71 6.19 -11.54 -0.07 -2.78 16 18 H 0.15 1.92 8.14 -2.39 -0.02 1.90 16 19 C -0.09 -1.37 10.24 30.60 0.31 -1.05 16 20 C -0.23 -4.18 5.05 -52.18 -0.26 -4.44 16 21 C -0.13 -2.59 10.16 30.59 0.31 -2.28 16 22 C -0.10 -1.41 10.53 30.59 0.32 -1.09 16 23 H 0.00 -0.06 7.48 -2.39 -0.02 -0.07 16 24 H 0.03 1.30 8.04 -2.39 -0.02 1.28 16 25 H 0.02 1.18 7.01 -2.38 -0.02 1.16 16 26 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 27 H 0.05 1.83 8.07 -2.39 -0.02 1.81 16 28 H 0.04 1.75 8.04 -2.39 -0.02 1.73 16 29 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.41 7.60 8.47 -92.71 -0.79 6.82 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.12 1.10 8.14 -2.39 -0.02 1.09 16 39 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -69.96 329.50 2.56 -67.40 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.24 Total: 11.67 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 4.82 Total: 3.42 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -4.48 Total: -109.18 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.05 Total: -20.38 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -69.96 2.56 -67.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752069457.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.799 kcal (2) G-P(sol) polarization free energy of solvation -69.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds