Wall clock time and date at job start Sun Mar 29 2020 22:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47307 * 2 1 4 4 C 1.36940 * 119.99968 * 275.30726 * 3 2 1 5 5 H 1.08003 * 119.99632 * 37.58438 * 4 3 2 6 6 C 1.38814 * 119.99892 * 217.57724 * 4 3 2 7 7 N 1.31613 * 119.99902 * 21.43123 * 6 4 3 8 8 Si 1.86798 * 119.99611 * 201.42586 * 6 4 3 9 9 H 1.48503 * 109.46854 * 90.00249 * 8 6 4 10 10 H 1.48494 * 109.47300 * 210.00115 * 8 6 4 11 11 H 1.48494 * 109.47663 * 330.00568 * 8 6 4 12 12 C 1.46497 * 120.00029 * 95.31334 * 3 2 1 13 13 C 1.53007 * 109.46754 * 269.99990 * 12 3 2 14 14 N 1.46507 * 109.46764 * 179.97438 * 13 12 3 15 15 C 1.34777 * 119.99587 * 179.72231 * 14 13 12 16 16 O 1.21622 * 119.99909 * 0.02562 * 15 14 13 17 17 C 1.47097 * 119.99850 * 180.02562 * 15 14 13 18 18 C 1.32994 * 119.99983 * 180.02562 * 17 15 14 19 19 C 1.51410 * 136.31678 * 359.62147 * 18 17 15 20 20 C 1.53376 * 87.51608 * 206.06142 * 19 18 17 21 21 C 1.51412 * 136.31783 * 180.02562 * 18 17 15 22 22 H 1.08997 * 109.47184 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47193 * 300.00446 * 1 2 3 24 24 H 1.09001 * 109.46929 * 59.99881 * 1 2 3 25 25 H 1.09001 * 109.47262 * 240.00099 * 2 1 3 26 26 H 1.09004 * 109.47427 * 120.00217 * 2 1 3 27 27 H 0.97002 * 119.99228 * 179.97438 * 7 6 4 28 28 H 1.08993 * 109.47368 * 150.00048 * 12 3 2 29 29 H 1.08999 * 109.47535 * 29.99735 * 12 3 2 30 30 H 1.08993 * 109.47136 * 59.99915 * 13 12 3 31 31 H 1.08995 * 109.47172 * 299.99742 * 13 12 3 32 32 H 0.96999 * 120.00106 * 359.97438 * 14 13 12 33 33 H 1.08001 * 120.00287 * 359.97438 * 17 15 14 34 34 H 1.09001 * 113.55972 * 320.64749 * 19 18 17 35 35 H 1.08995 * 113.55653 * 91.37720 * 19 18 17 36 36 H 1.09001 * 113.96545 * 220.28914 * 20 19 18 37 37 H 1.09002 * 113.59657 * 88.80393 * 20 19 18 38 38 H 1.08997 * 113.55766 * 268.62363 * 21 18 17 39 39 H 1.09001 * 113.55548 * 39.35578 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0633 -1.1809 5 1 1.4105 1.9279 -1.9627 6 6 3.2113 2.9289 -1.3728 7 7 4.3027 2.7979 -0.6491 8 14 3.0995 4.2794 -2.6585 9 1 2.5377 5.5068 -2.0395 10 1 4.4550 4.5695 -3.1909 11 1 2.2167 3.8358 -3.7671 12 6 2.3733 2.0326 1.2632 13 6 1.1426 2.7382 1.8366 14 7 1.4974 3.3892 3.1002 15 6 0.5663 4.0809 3.7865 16 8 -0.5685 4.1642 3.3571 17 6 0.9226 4.7350 5.0550 18 6 0.0037 5.4171 5.7325 19 6 -1.4608 5.7571 5.5532 20 6 -1.2088 7.0007 6.4149 21 6 -0.0431 6.2063 7.0238 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 5.0492 3.4026 -0.7835 28 1 3.1617 2.7640 1.0859 29 1 2.7256 1.2833 1.9721 30 1 0.3542 2.0069 2.0139 31 1 0.7904 3.4876 1.1278 32 1 2.4034 3.3255 3.4410 33 1 1.9303 4.6606 5.4365 34 1 -1.7310 5.9900 4.5233 35 1 -2.1351 5.0362 6.0154 36 1 -2.0094 7.2195 7.1214 37 1 -0.8949 7.8728 5.8411 38 1 -0.3283 5.6087 7.8896 39 1 0.8490 6.8075 7.1995 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753079809.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:46 Heat of formation + Delta-G solvation = 15.866603 kcal Electronic energy + Delta-G solvation = -18399.482025 eV Core-core repulsion = 15536.722654 eV Total energy + Delta-G solvation = -2862.759371 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.52799 -38.19827 -36.24160 -33.94415 -31.87590 -31.02344 -29.42345 -27.42441 -25.85533 -24.38506 -23.27838 -21.69586 -20.44753 -20.14816 -18.16105 -16.93421 -16.28944 -15.72247 -15.56074 -15.07062 -14.55040 -14.34220 -13.80062 -13.64437 -13.49207 -12.62809 -12.56454 -12.37000 -12.14036 -11.92184 -11.77255 -11.49281 -11.11199 -11.09324 -10.77204 -10.61495 -10.56256 -10.48123 -10.06348 -9.84053 -9.78607 -9.33703 -9.17694 -8.53125 -8.35552 -6.61594 -5.82581 -3.41498 1.48728 3.36279 3.43783 3.45850 3.62066 3.66153 4.37139 4.43318 4.50755 4.67298 4.98146 5.25694 5.30282 5.40980 5.50511 5.57185 5.59135 5.68368 5.93041 6.01722 6.09467 6.14482 6.20120 6.26404 6.40151 6.45614 6.53659 6.64736 6.71087 6.92588 6.96386 7.07444 7.18398 7.57093 7.81327 8.05391 8.49201 8.70994 9.15814 9.77682 10.35781 11.17446 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.022648 B = 0.004811 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.029305 B = 5818.525674 C = 6429.587867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.581 5.581 4 C -0.261 4.261 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.276 1.276 12 C 0.138 3.862 13 C 0.098 3.902 14 N -0.717 5.717 15 C 0.541 3.459 16 O -0.551 6.551 17 C -0.190 4.190 18 C -0.074 4.074 19 C -0.105 4.105 20 C -0.143 4.143 21 C -0.107 4.107 22 H 0.036 0.964 23 H 0.044 0.956 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.034 0.966 27 H 0.255 0.745 28 H 0.098 0.902 29 H 0.028 0.972 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.397 0.603 33 H 0.131 0.869 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.454 3.984 14.154 15.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.301 5.301 4 C -0.391 4.391 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.201 1.201 12 C 0.010 3.990 13 C -0.027 4.027 14 N -0.367 5.367 15 C 0.329 3.671 16 O -0.431 6.431 17 C -0.211 4.211 18 C -0.075 4.075 19 C -0.141 4.141 20 C -0.180 4.180 21 C -0.144 4.144 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.116 0.884 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.231 0.769 33 H 0.148 0.852 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.075 4.074 13.771 15.593 hybrid contribution 0.511 0.742 -0.476 1.019 sum -5.564 4.816 13.294 15.195 Atomic orbital electron populations 1.22390 0.99931 0.99057 1.01408 1.20875 0.91762 0.86986 0.98863 1.43620 1.76063 1.08309 1.02118 1.19047 1.04761 1.21270 0.94001 0.92055 1.25178 0.94134 1.01188 0.98143 1.69996 1.03169 1.37256 1.42578 0.86383 0.76924 0.82599 0.81466 1.21238 1.21690 1.20135 1.21057 0.94617 0.96931 0.86383 1.22424 1.00951 0.96491 0.82829 1.46037 1.13129 1.52952 1.24542 1.18424 0.85239 0.79052 0.84407 1.90743 1.20532 1.61644 1.70215 1.21738 0.99923 1.02389 0.97078 1.23379 0.96725 0.91629 0.95817 1.22181 0.93567 0.96483 1.01910 1.22722 0.98416 0.97323 0.99558 1.22318 0.99509 0.97349 0.95239 0.94464 0.93665 0.93117 0.93598 0.94746 0.93529 0.88429 0.95336 0.93082 0.91865 0.76940 0.85170 0.89530 0.88691 0.90613 0.89821 0.88380 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 10.21 37.16 0.38 -2.80 16 2 C 0.14 3.01 6.44 -4.04 -0.03 2.98 16 3 N -0.58 -14.33 2.43 -173.23 -0.42 -14.75 16 4 C -0.26 -7.11 9.45 -15.06 -0.14 -7.25 16 5 H 0.06 1.68 7.92 -52.48 -0.42 1.27 16 6 C 0.01 0.38 4.95 -17.43 -0.09 0.29 16 7 N -0.89 -24.97 11.47 55.49 0.64 -24.33 16 8 Si 0.90 21.62 29.60 -169.99 -5.03 16.59 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.14 3.12 5.45 -4.04 -0.02 3.09 16 13 C 0.10 2.07 6.00 -4.03 -0.02 2.04 16 14 N -0.72 -12.60 5.55 -61.49 -0.34 -12.94 16 15 C 0.54 9.63 7.76 -12.67 -0.10 9.53 16 16 O -0.55 -11.73 15.15 5.26 0.08 -11.65 16 17 C -0.19 -2.60 10.03 -37.81 -0.38 -2.97 16 18 C -0.07 -0.91 6.93 -100.48 -0.70 -1.61 16 19 C -0.10 -1.26 6.99 -27.56 -0.19 -1.45 16 20 C -0.14 -1.28 8.17 -26.21 -0.21 -1.50 16 21 C -0.11 -0.94 7.95 -27.41 -0.22 -1.16 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.04 0.87 6.64 -51.93 -0.34 0.52 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 26 H 0.03 0.68 7.83 -51.93 -0.41 0.27 16 27 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.10 2.47 5.52 -51.93 -0.29 2.19 16 29 H 0.03 0.60 7.86 -51.93 -0.41 0.19 16 30 H 0.05 1.09 6.64 -51.93 -0.34 0.75 16 31 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 32 H 0.40 5.88 8.46 -40.82 -0.35 5.54 16 33 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.09 1.24 7.49 -51.93 -0.39 0.85 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 323.80 15.07 4.88 4.88 Total: -1.00 -31.00 323.80 -8.22 -39.22 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.30 Total: 3.78 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -1.72 Total: -0.81 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.13 Total: -52.02 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.08 Total: -11.65 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.00 -8.22 -39.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753079809.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.090 kcal (2) G-P(sol) polarization free energy of solvation -31.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds