Wall clock time and date at job start Sun Mar 29 2020 23:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46924 * 2 1 4 4 H 1.08998 * 109.47089 * 55.33310 * 3 2 1 5 5 C 1.50699 * 109.46962 * 175.33688 * 3 2 1 6 6 H 1.08003 * 120.00172 * 117.13718 * 5 3 2 7 7 C 1.37872 * 119.99994 * 297.13197 * 5 3 2 8 8 N 1.31513 * 119.99975 * 350.20698 * 7 5 3 9 9 Si 1.86807 * 120.00225 * 170.20947 * 7 5 3 10 10 H 1.48494 * 109.47252 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47251 * 59.99567 * 9 7 5 12 12 H 1.48504 * 109.46573 * 299.99897 * 9 7 5 13 13 N 1.46902 * 109.46821 * 295.33519 * 3 2 1 14 14 C 1.46905 * 110.99789 * 146.37719 * 13 3 2 15 15 C 1.54613 * 112.64580 * 58.21250 * 14 13 3 16 16 C 1.53936 * 106.22889 * 147.80599 * 15 14 13 17 17 C 1.54611 * 106.23195 * 0.02562 * 16 15 14 18 18 N 1.46907 * 112.64435 * 212.18137 * 17 16 15 19 19 C 1.55154 * 112.67040 * 175.03799 * 14 13 3 20 20 C 1.53872 * 107.42091 * 86.96076 * 17 16 15 21 21 C 1.52993 * 109.01864 * 314.62190 * 20 17 16 22 22 C 1.53871 * 112.53708 * 295.71848 * 14 13 3 23 23 H 1.09004 * 109.47610 * 65.08089 * 1 2 3 24 24 H 1.09001 * 109.46983 * 185.08076 * 1 2 3 25 25 H 1.09001 * 109.47566 * 305.07948 * 1 2 3 26 26 H 1.09000 * 109.47350 * 240.00012 * 2 1 3 27 27 H 1.09004 * 109.46887 * 119.99541 * 2 1 3 28 28 H 0.96993 * 120.00270 * 356.42244 * 8 7 5 29 29 H 1.00903 * 110.99894 * 270.32576 * 13 3 2 30 30 H 1.09005 * 110.09839 * 266.99272 * 15 14 13 31 31 H 1.08997 * 110.10247 * 28.61297 * 15 14 13 32 32 H 1.09005 * 110.10115 * 240.80931 * 16 15 14 33 33 H 1.09006 * 110.10026 * 119.20042 * 16 15 14 34 34 H 1.00893 * 111.00510 * 296.82549 * 18 17 16 35 35 H 1.00904 * 110.99695 * 60.78769 * 18 17 16 36 36 H 1.08995 * 111.01952 * 314.77018 * 19 14 13 37 37 H 1.08996 * 111.01324 * 78.60892 * 19 14 13 38 38 H 1.08998 * 109.55345 * 74.48429 * 20 17 16 39 39 H 1.09000 * 109.54542 * 194.76678 * 20 17 16 40 40 H 1.08998 * 109.32189 * 64.36784 * 21 20 17 41 41 H 1.09000 * 109.32604 * 183.82464 * 21 20 17 42 42 H 1.08994 * 109.54907 * 290.54519 * 22 14 13 43 43 H 1.09003 * 109.54740 * 50.83444 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6099 1.9799 0.8452 5 6 3.5425 1.4441 0.1155 6 1 4.1452 1.8486 -0.6843 7 6 4.1478 0.9293 1.2422 8 7 3.4222 0.6152 2.2931 9 14 5.9986 0.6780 1.2761 10 1 6.3978 0.1159 2.5913 11 1 6.6790 1.9812 1.0669 12 1 6.3900 -0.2636 0.1965 13 7 1.6443 2.1017 -1.2518 14 6 1.3679 3.5275 -1.0314 15 6 2.5804 4.2850 -0.4426 16 6 2.5062 5.7170 -1.0023 17 6 1.2517 5.7639 -1.9048 18 7 1.4063 6.6821 -3.0411 19 6 1.0656 4.2888 -2.3492 20 6 0.0510 6.1106 -1.0071 21 6 0.1162 5.2603 0.2631 22 6 0.1635 3.7580 -0.1018 23 1 -0.3634 0.4330 -0.9320 24 1 -0.3633 -1.0236 0.0910 25 1 -0.3634 0.5906 0.8410 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 2.4689 0.7937 2.2952 29 1 2.3473 1.9756 -1.9646 30 1 2.5176 4.3042 0.6455 31 1 3.5086 3.8077 -0.7565 32 1 3.3984 5.9368 -1.5886 33 1 2.4075 6.4334 -0.1866 34 1 1.5258 7.6325 -2.7244 35 1 2.1730 6.3990 -3.6329 36 1 1.7801 4.0217 -3.1277 37 1 0.0434 4.1059 -2.6805 38 1 0.0875 7.1670 -0.7410 39 1 -0.8759 5.8992 -1.5401 40 1 1.0070 5.5284 0.8313 41 1 -0.7676 5.4522 0.8715 42 1 -0.7527 3.4601 -0.6114 43 1 0.2858 3.1679 0.8065 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246337708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:47 Heat of formation + Delta-G solvation = -23.874319 kcal Electronic energy + Delta-G solvation = -20580.057712 eV Core-core repulsion = 17851.408140 eV Total energy + Delta-G solvation = -2728.649572 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.40674 -36.17731 -33.47649 -32.18200 -31.42478 -30.07185 -28.28307 -27.67180 -25.30355 -23.34187 -22.55520 -21.91531 -19.94723 -18.65769 -18.13851 -17.07268 -15.92935 -15.74151 -14.89514 -14.14450 -13.90968 -13.78923 -13.35906 -13.10806 -12.91057 -12.41785 -12.23402 -12.16718 -12.04814 -11.62035 -11.41810 -11.20620 -10.90856 -10.75898 -10.73653 -10.52485 -10.32894 -10.16694 -10.10933 -9.95396 -9.87151 -9.60881 -9.42326 -8.78968 -8.55962 -8.27005 -7.25385 -6.32739 -4.07871 3.39336 3.42054 3.59642 4.43334 4.50872 4.71625 4.91865 5.07874 5.29386 5.39737 5.46372 5.51999 5.56811 5.66802 5.74231 5.82104 5.91705 6.10279 6.14665 6.18897 6.21756 6.28203 6.31325 6.34943 6.42986 6.50926 6.56947 6.62668 6.69178 6.81206 6.91740 6.97356 7.06142 7.22799 7.25463 7.40400 7.48138 7.61647 7.99984 8.09663 8.49903 8.64836 8.83637 9.62572 10.99529 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022948 B = 0.007777 C = 0.006661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.860418 B = 3599.519905 C = 4202.415663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.204 3.796 4 H 0.028 0.972 5 C -0.618 4.618 6 H 0.047 0.953 7 C 0.028 3.972 8 N -0.906 5.906 9 Si 1.056 2.944 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.288 1.288 13 N -0.668 5.668 14 C 0.124 3.876 15 C -0.133 4.133 16 C -0.150 4.150 17 C 0.109 3.891 18 N -0.832 5.832 19 C -0.096 4.096 20 C -0.097 4.097 21 C -0.121 4.121 22 C -0.102 4.102 23 H 0.052 0.948 24 H 0.027 0.973 25 H 0.036 0.964 26 H 0.041 0.959 27 H 0.062 0.938 28 H 0.272 0.728 29 H 0.331 0.669 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.336 0.664 35 H 0.341 0.659 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.558 9.407 -6.291 12.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C 0.095 3.905 4 H 0.046 0.954 5 C -0.656 4.656 6 H 0.065 0.935 7 C -0.178 4.178 8 N -0.542 5.542 9 Si 0.885 3.115 10 H -0.208 1.208 11 H -0.218 1.218 12 H -0.215 1.215 13 N -0.295 5.295 14 C 0.032 3.968 15 C -0.173 4.173 16 C -0.191 4.191 17 C 0.016 3.984 18 N -0.359 5.359 19 C -0.134 4.134 20 C -0.135 4.135 21 C -0.159 4.159 22 C -0.139 4.139 23 H 0.071 0.929 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.149 0.851 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.732 8.390 -5.510 11.098 hybrid contribution 0.837 1.154 -0.344 1.466 sum -3.896 9.544 -5.854 11.855 Atomic orbital electron populations 1.21699 0.98405 0.98612 1.00788 1.21562 0.92769 0.99738 1.00767 1.19239 0.93747 0.90286 0.87191 0.95413 1.22546 0.92114 1.45114 1.05875 0.93487 1.25603 1.06188 0.93723 0.92288 1.70784 1.09089 1.44810 1.29492 0.83731 0.75275 0.76392 0.76078 1.20847 1.21769 1.21507 1.60701 1.48857 1.08610 1.11365 1.21735 0.93436 0.88577 0.93092 1.22835 1.00401 0.93279 1.00793 1.23061 0.97560 0.99004 0.99438 1.21873 0.94274 0.92964 0.89284 1.58686 1.51255 1.05363 1.20638 1.22638 1.01380 0.92385 0.97023 1.21620 0.97545 0.98671 0.95626 1.21917 1.01648 0.95526 0.96821 1.22033 0.97711 0.94570 0.99628 0.92854 0.95377 0.94481 0.93997 0.91979 0.91685 0.85149 0.91909 0.90810 0.93130 0.92426 0.85141 0.84645 0.92279 0.91279 0.92818 0.91728 0.91447 0.92477 0.92061 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.74 37.16 0.36 -2.36 16 2 C -0.11 -2.52 5.31 -26.73 -0.14 -2.67 16 3 C 0.20 4.76 1.15 -68.86 -0.08 4.68 16 4 H 0.03 0.71 5.20 -51.93 -0.27 0.44 16 5 C -0.62 -16.07 6.99 -34.44 -0.24 -16.31 16 6 H 0.05 1.24 6.83 -52.48 -0.36 0.88 16 7 C 0.03 0.75 5.15 -17.82 -0.09 0.66 16 8 N -0.91 -26.15 12.78 55.43 0.71 -25.44 16 9 Si 1.06 24.60 29.92 -169.99 -5.09 19.52 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.67 -13.45 5.70 -91.80 -0.52 -13.98 16 14 C 0.12 2.20 0.93 -129.16 -0.12 2.08 16 15 C -0.13 -2.45 4.23 -25.40 -0.11 -2.56 16 16 C -0.15 -2.23 5.54 -25.40 -0.14 -2.37 16 17 C 0.11 1.48 1.38 -129.14 -0.18 1.31 16 18 N -0.83 -9.68 9.29 2.71 0.03 -9.66 16 19 C -0.10 -1.48 5.47 -24.44 -0.13 -1.62 16 20 C -0.10 -1.27 5.22 -26.28 -0.14 -1.41 16 21 C -0.12 -1.74 5.53 -25.85 -0.14 -1.89 16 22 C -0.10 -1.72 5.08 -25.40 -0.13 -1.85 16 23 H 0.05 1.02 7.89 -51.93 -0.41 0.61 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 1.59 6.25 -51.93 -0.32 1.26 16 28 H 0.27 7.84 6.26 -40.82 -0.26 7.58 16 29 H 0.33 6.82 8.22 -39.29 -0.32 6.50 16 30 H 0.06 1.29 6.99 -51.93 -0.36 0.92 16 31 H 0.07 1.54 6.44 -51.93 -0.33 1.21 16 32 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 33 H 0.06 0.82 6.98 -51.93 -0.36 0.46 16 34 H 0.34 3.37 9.07 -39.30 -0.36 3.02 16 35 H 0.34 3.69 9.06 -39.29 -0.36 3.34 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.08 7.80 -51.93 -0.41 0.68 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.86 8.02 -51.93 -0.42 0.44 16 40 H 0.07 1.03 5.28 -51.93 -0.27 0.75 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 1.01 8.01 -51.93 -0.42 0.60 16 43 H 0.07 1.27 6.27 -51.93 -0.33 0.95 16 LS Contribution 312.25 15.07 4.71 4.71 Total: -1.00 -27.05 312.25 -8.75 -35.80 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -7.30 Total: 13.36 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: -1.28 Total: -24.32 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.21 Total: -49.07 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.09 Total: 19.52 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.05 -8.75 -35.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246337708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.927 kcal (2) G-P(sol) polarization free energy of solvation -27.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds