Wall clock time and date at job start Sun Mar 29 2020 23:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46924 * 2 1 4 4 H 1.08998 * 109.47089 * 55.33310 * 3 2 1 5 5 C 1.50699 * 109.46962 * 175.33688 * 3 2 1 6 6 H 1.08003 * 120.00172 * 117.13718 * 5 3 2 7 7 C 1.37872 * 119.99994 * 297.13197 * 5 3 2 8 8 N 1.31513 * 119.99975 * 350.20698 * 7 5 3 9 9 Si 1.86807 * 120.00225 * 170.20947 * 7 5 3 10 10 H 1.48494 * 109.47252 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47251 * 59.99567 * 9 7 5 12 12 H 1.48504 * 109.46573 * 299.99897 * 9 7 5 13 13 N 1.46902 * 109.46821 * 295.33519 * 3 2 1 14 14 C 1.46905 * 110.99789 * 146.37719 * 13 3 2 15 15 C 1.54613 * 112.64580 * 58.21250 * 14 13 3 16 16 C 1.53936 * 106.22889 * 147.80599 * 15 14 13 17 17 C 1.54611 * 106.23195 * 0.02562 * 16 15 14 18 18 N 1.46907 * 112.64435 * 212.18137 * 17 16 15 19 19 C 1.55154 * 112.67040 * 175.03799 * 14 13 3 20 20 C 1.53872 * 107.42091 * 86.96076 * 17 16 15 21 21 C 1.52993 * 109.01864 * 314.62190 * 20 17 16 22 22 C 1.53871 * 112.53708 * 295.71848 * 14 13 3 23 23 H 1.09004 * 109.47610 * 65.08089 * 1 2 3 24 24 H 1.09001 * 109.46983 * 185.08076 * 1 2 3 25 25 H 1.09001 * 109.47566 * 305.07948 * 1 2 3 26 26 H 1.09000 * 109.47350 * 240.00012 * 2 1 3 27 27 H 1.09004 * 109.46887 * 119.99541 * 2 1 3 28 28 H 0.96993 * 120.00270 * 356.42244 * 8 7 5 29 29 H 1.00903 * 110.99894 * 270.32576 * 13 3 2 30 30 H 1.09005 * 110.09839 * 266.99272 * 15 14 13 31 31 H 1.08997 * 110.10247 * 28.61297 * 15 14 13 32 32 H 1.09005 * 110.10115 * 240.80931 * 16 15 14 33 33 H 1.09006 * 110.10026 * 119.20042 * 16 15 14 34 34 H 1.00893 * 111.00510 * 296.82549 * 18 17 16 35 35 H 1.00904 * 110.99695 * 60.78769 * 18 17 16 36 36 H 1.08995 * 111.01952 * 314.77018 * 19 14 13 37 37 H 1.08996 * 111.01324 * 78.60892 * 19 14 13 38 38 H 1.08998 * 109.55345 * 74.48429 * 20 17 16 39 39 H 1.09000 * 109.54542 * 194.76678 * 20 17 16 40 40 H 1.08998 * 109.32189 * 64.36784 * 21 20 17 41 41 H 1.09000 * 109.32604 * 183.82464 * 21 20 17 42 42 H 1.08994 * 109.54907 * 290.54519 * 22 14 13 43 43 H 1.09003 * 109.54740 * 50.83444 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6099 1.9799 0.8452 5 6 3.5425 1.4441 0.1155 6 1 4.1452 1.8486 -0.6843 7 6 4.1478 0.9293 1.2422 8 7 3.4222 0.6152 2.2931 9 14 5.9986 0.6780 1.2761 10 1 6.3978 0.1159 2.5913 11 1 6.6790 1.9812 1.0669 12 1 6.3900 -0.2636 0.1965 13 7 1.6443 2.1017 -1.2518 14 6 1.3679 3.5275 -1.0314 15 6 2.5804 4.2850 -0.4426 16 6 2.5062 5.7170 -1.0023 17 6 1.2517 5.7639 -1.9048 18 7 1.4063 6.6821 -3.0411 19 6 1.0656 4.2888 -2.3492 20 6 0.0510 6.1106 -1.0071 21 6 0.1162 5.2603 0.2631 22 6 0.1635 3.7580 -0.1018 23 1 -0.3634 0.4330 -0.9320 24 1 -0.3633 -1.0236 0.0910 25 1 -0.3634 0.5906 0.8410 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 2.4689 0.7937 2.2952 29 1 2.3473 1.9756 -1.9646 30 1 2.5176 4.3042 0.6455 31 1 3.5086 3.8077 -0.7565 32 1 3.3984 5.9368 -1.5886 33 1 2.4075 6.4334 -0.1866 34 1 1.5258 7.6325 -2.7244 35 1 2.1730 6.3990 -3.6329 36 1 1.7801 4.0217 -3.1277 37 1 0.0434 4.1059 -2.6805 38 1 0.0875 7.1670 -0.7410 39 1 -0.8759 5.8992 -1.5401 40 1 1.0070 5.5284 0.8313 41 1 -0.7676 5.4522 0.8715 42 1 -0.7527 3.4601 -0.6114 43 1 0.2858 3.1679 0.8065 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246337708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:46 Heat of formation + Delta-G solvation = -41.760829 kcal Electronic energy + Delta-G solvation = -20580.833329 eV Core-core repulsion = 17851.408140 eV Total energy + Delta-G solvation = -2729.425189 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.72537 -37.91076 -34.93051 -33.70096 -33.11441 -31.48982 -29.75841 -28.88010 -27.17634 -25.02113 -24.13882 -23.15735 -21.73904 -19.97540 -19.50921 -19.07698 -17.30435 -16.92238 -16.12022 -15.73254 -15.62293 -15.41909 -14.98974 -14.69899 -14.26988 -14.09912 -13.67004 -13.50453 -13.45802 -13.12244 -12.91378 -12.75254 -12.55788 -12.36945 -12.24467 -12.07717 -11.99851 -11.73807 -11.63256 -11.55030 -11.38156 -11.01878 -10.95987 -10.69945 -10.35609 -9.57745 -9.04660 -8.46016 -6.25098 1.48691 1.54692 1.73341 2.55521 3.18917 3.29813 3.46282 3.70594 3.78458 4.00499 4.24792 4.27724 4.28597 4.34305 4.43571 4.46451 4.54180 4.56306 4.69148 4.70973 4.81492 4.93450 4.98052 5.05119 5.08379 5.13919 5.19913 5.21355 5.23341 5.30414 5.34376 5.36054 5.41016 5.54816 5.61421 5.74342 6.01352 6.08976 6.27944 6.61080 6.63936 6.64678 6.88927 7.52631 8.81159 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022948 B = 0.007777 C = 0.006661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.860418 B = 3599.519905 C = 4202.415663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.106 4.106 3 C 0.214 3.786 4 H 0.004 0.996 5 C -0.616 4.616 6 H 0.041 0.959 7 C -0.022 4.022 8 N -0.932 5.932 9 Si 1.099 2.901 10 H -0.288 1.288 11 H -0.278 1.278 12 H -0.274 1.274 13 N -0.661 5.661 14 C 0.116 3.884 15 C -0.126 4.126 16 C -0.143 4.143 17 C 0.122 3.878 18 N -0.826 5.826 19 C -0.089 4.089 20 C -0.092 4.092 21 C -0.116 4.116 22 C -0.099 4.099 23 H 0.062 0.938 24 H 0.046 0.954 25 H 0.032 0.968 26 H 0.037 0.963 27 H 0.032 0.968 28 H 0.260 0.740 29 H 0.328 0.672 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.350 0.650 35 H 0.347 0.653 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.089 11.085 -7.919 14.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.145 4.145 3 C 0.104 3.896 4 H 0.022 0.978 5 C -0.655 4.655 6 H 0.059 0.941 7 C -0.222 4.222 8 N -0.569 5.569 9 Si 0.923 3.077 10 H -0.213 1.213 11 H -0.204 1.204 12 H -0.200 1.200 13 N -0.288 5.288 14 C 0.024 3.976 15 C -0.167 4.167 16 C -0.183 4.183 17 C 0.028 3.972 18 N -0.356 5.356 19 C -0.127 4.127 20 C -0.130 4.130 21 C -0.154 4.154 22 C -0.137 4.137 23 H 0.081 0.919 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.145 0.855 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.164 0.836 35 H 0.161 0.839 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.272 10.093 -7.165 13.454 hybrid contribution 0.992 0.642 0.145 1.191 sum -4.280 10.735 -7.020 13.522 Atomic orbital electron populations 1.21550 0.95665 0.99887 1.01047 1.21446 0.95209 0.98861 0.98968 1.18987 0.92147 0.90614 0.87810 0.97834 1.22838 0.93674 1.43789 1.05178 0.94061 1.26807 1.09540 0.93606 0.92202 1.70889 1.08567 1.46907 1.30532 0.83160 0.71293 0.77119 0.76156 1.21327 1.20372 1.20004 1.60671 1.48094 1.10453 1.09632 1.21896 0.93466 0.87200 0.95047 1.22672 0.99168 0.95969 0.98856 1.23017 0.98931 0.96312 1.00024 1.21702 0.93670 0.92245 0.89558 1.58636 1.51702 1.05736 1.19480 1.22568 1.01504 0.93368 0.95310 1.21592 0.97412 0.99485 0.94505 1.21871 1.01925 0.93681 0.97937 1.22001 0.97460 0.96267 0.97940 0.91934 0.93450 0.94882 0.94424 0.94977 0.93003 0.85472 0.95045 0.93910 0.92303 0.91529 0.83601 0.83899 0.92301 0.90885 0.90668 0.91068 0.92629 0.90800 0.91391 0.94822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.88 9.74 71.98 0.70 -4.18 16 2 C -0.11 -5.00 5.31 30.59 0.16 -4.84 16 3 C 0.21 10.31 1.15 44.17 0.05 10.36 16 4 H 0.00 0.21 5.20 -2.39 -0.01 0.20 16 5 C -0.62 -32.99 6.99 25.60 0.18 -32.81 16 6 H 0.04 2.22 6.83 -2.91 -0.02 2.20 16 7 C -0.02 -1.21 5.15 84.65 0.44 -0.78 16 8 N -0.93 -55.69 12.78 21.45 0.27 -55.42 16 9 Si 1.10 50.24 29.92 68.60 2.05 52.29 16 10 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 N -0.66 -26.98 5.70 -444.36 -2.53 -29.51 16 14 C 0.12 4.11 0.93 5.11 0.00 4.11 16 15 C -0.13 -4.74 4.23 31.46 0.13 -4.60 16 16 C -0.14 -4.00 5.54 31.46 0.17 -3.83 16 17 C 0.12 2.97 1.38 5.12 0.01 2.98 16 18 N -0.83 -16.17 9.29 -145.33 -1.35 -17.51 16 19 C -0.09 -2.58 5.47 32.08 0.18 -2.41 16 20 C -0.09 -2.12 5.22 30.89 0.16 -1.96 16 21 C -0.12 -3.17 5.53 31.16 0.17 -3.00 16 22 C -0.10 -3.34 5.08 31.46 0.16 -3.18 16 23 H 0.06 2.33 7.89 -2.38 -0.02 2.31 16 24 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.03 1.69 6.25 -2.38 -0.01 1.68 16 28 H 0.26 15.74 6.26 -92.71 -0.58 15.16 16 29 H 0.33 13.64 8.22 -89.69 -0.74 12.91 16 30 H 0.03 1.34 6.99 -2.38 -0.02 1.32 16 31 H 0.04 1.83 6.44 -2.39 -0.02 1.82 16 32 H 0.06 1.56 8.13 -2.38 -0.02 1.54 16 33 H 0.07 1.77 6.98 -2.38 -0.02 1.75 16 34 H 0.35 5.55 9.07 -89.70 -0.81 4.74 16 35 H 0.35 6.31 9.06 -89.69 -0.81 5.50 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 2.10 7.80 -2.39 -0.02 2.08 16 38 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.07 1.61 8.02 -2.39 -0.02 1.59 16 40 H 0.06 1.66 5.28 -2.39 -0.01 1.65 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 2.17 8.01 -2.39 -0.02 2.16 16 43 H 0.03 1.34 6.27 -2.39 -0.01 1.33 16 Total: -1.00 -59.65 312.25 -0.20 -59.85 By element: Atomic # 1 Polarization: 35.59 SS G_CDS: -1.16 Total: 34.43 kcal Atomic # 6 Polarization: -46.64 SS G_CDS: 2.52 Total: -44.12 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -3.61 Total: -102.45 kcal Atomic # 14 Polarization: 50.24 SS G_CDS: 2.05 Total: 52.29 kcal Total: -59.65 -0.20 -59.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246337708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.091 kcal (2) G-P(sol) polarization free energy of solvation -59.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds