Wall clock time and date at job start Sun Mar 29 2020 23:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86791 * 120.00405 * 2 1 4 4 H 1.48499 * 109.47581 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47175 * 300.00177 * 3 2 1 6 6 H 1.48502 * 109.47459 * 59.99923 * 3 2 1 7 7 C 1.37879 * 119.99654 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99746 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00272 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47325 * 180.02562 * 9 7 2 11 11 C 1.35933 * 124.84380 * 269.99886 * 10 9 7 12 12 O 1.21687 * 125.99764 * 0.02562 * 11 10 9 13 13 C 1.46769 * 108.00138 * 179.75938 * 11 10 9 14 14 C 1.38411 * 139.04779 * 179.44677 * 13 11 10 15 15 C 1.39413 * 119.70506 * 180.44089 * 14 13 11 16 16 C 1.36964 * 123.14182 * 0.29364 * 15 14 13 17 17 C 1.40500 * 118.93697 * 0.02562 * 16 15 14 18 18 C 1.40511 * 125.78040 * 179.97438 * 17 16 15 19 19 C 1.36814 * 118.50202 * 180.02562 * 18 17 16 20 20 C 1.39481 * 123.25661 * 0.02562 * 19 18 17 21 21 C 1.38217 * 119.99264 * 0.02562 * 20 19 18 22 22 C 1.39162 * 116.10843 * 0.02562 * 21 20 19 23 23 H 0.97008 * 119.99557 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47368 * 59.99283 * 9 7 2 25 25 H 1.09002 * 109.46475 * 299.99986 * 9 7 2 26 26 H 1.08002 * 120.15012 * 0.72536 * 14 13 11 27 27 H 1.08001 * 118.42735 * 180.31394 * 15 14 13 28 28 H 1.07997 * 120.53309 * 180.02562 * 16 15 14 29 29 H 1.07998 * 120.74516 * 0.03931 * 18 17 16 30 30 H 1.07995 * 118.37014 * 179.97438 * 19 18 17 31 31 H 1.08009 * 120.00158 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6127 0.0018 11 6 2.7083 -4.2036 -1.1132 12 8 2.4500 -3.9003 -2.2630 13 6 3.6252 -5.2673 -0.6868 14 6 4.4422 -6.2316 -1.2510 15 6 5.1735 -7.0859 -0.4270 16 6 5.1256 -7.0296 0.9407 17 6 4.3032 -6.0691 1.5531 18 6 4.1453 -5.8851 2.9372 19 6 3.3013 -4.9003 3.3728 20 6 2.5875 -4.0681 2.5106 21 6 2.7148 -4.2181 1.1425 22 6 3.5756 -5.2242 0.7143 23 1 -0.4850 0.8402 -0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 4.5165 -6.3190 -2.3250 27 1 5.8084 -7.8274 -0.8891 28 1 5.7107 -7.7124 1.5388 29 1 4.6783 -6.5069 3.6412 30 1 3.1812 -4.7610 4.4369 31 1 1.9353 -3.3064 2.9121 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002169344.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:12 Heat of formation + Delta-G solvation = 34.797559 kcal Electronic energy + Delta-G solvation = -17627.484129 eV Core-core repulsion = 14839.302829 eV Total energy + Delta-G solvation = -2788.181300 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.084 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.71745 -38.29805 -36.53783 -35.27682 -33.27556 -31.31082 -30.30983 -28.65989 -27.29322 -24.48817 -23.44698 -22.27997 -21.17016 -20.25581 -17.25171 -16.76092 -16.59498 -16.38500 -15.84553 -15.01519 -14.93225 -14.39615 -13.86369 -13.55937 -13.09134 -12.99224 -12.71731 -12.48107 -12.07369 -11.61488 -11.55604 -11.37145 -10.99292 -10.84454 -10.69526 -10.38381 -10.24824 -9.65569 -9.45947 -8.59102 -8.57998 -8.51777 -7.13219 -6.19549 -4.26719 0.24502 1.19218 2.17915 2.72768 3.23370 3.30660 3.33979 3.45345 3.82447 4.25576 4.34299 4.44726 4.77667 4.90243 5.00630 5.14860 5.21770 5.41828 5.42990 5.58460 5.68337 5.89954 5.96822 6.20526 6.31501 6.40019 6.52022 6.63972 6.77552 6.84412 7.07895 7.09995 7.36760 7.75621 7.86249 7.98035 8.53500 8.79756 9.39660 10.88147 Molecular weight = 253.08amu Principal moments of inertia in cm(-1) A = 0.025925 B = 0.006880 C = 0.006025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.790163 B = 4068.540561 C = 4646.557748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.245 3.755 10 N -0.529 5.529 11 C 0.564 3.436 12 O -0.492 6.492 13 C -0.143 4.143 14 C -0.032 4.032 15 C -0.132 4.132 16 C -0.075 4.075 17 C -0.025 4.025 18 C -0.144 4.144 19 C -0.078 4.078 20 C -0.130 4.130 21 C 0.185 3.815 22 C -0.123 4.123 23 H 0.266 0.734 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.132 0.868 27 H 0.127 0.873 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.668 -13.572 5.860 17.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.575 4.575 8 H 0.080 0.920 9 C 0.128 3.872 10 N -0.247 5.247 11 C 0.354 3.646 12 O -0.367 6.367 13 C -0.147 4.147 14 C -0.051 4.051 15 C -0.150 4.150 16 C -0.093 4.093 17 C -0.026 4.026 18 C -0.163 4.163 19 C -0.097 4.097 20 C -0.152 4.152 21 C 0.084 3.916 22 C -0.126 4.126 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.150 0.850 27 H 0.145 0.855 28 H 0.151 0.849 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.222 -13.123 5.106 16.306 hybrid contribution 0.343 1.104 0.042 1.157 sum 8.565 -12.018 5.149 15.630 Atomic orbital electron populations 1.69936 1.06039 1.27395 1.49592 1.24927 0.94945 0.99418 0.94508 0.86348 0.80064 0.82753 0.77801 1.19619 1.20632 1.20664 1.21401 0.93644 0.90130 1.52369 0.91976 1.19567 0.86759 0.81344 0.99512 1.46326 1.42647 1.32764 1.02915 1.18134 0.80411 0.81517 0.84520 1.90781 1.61170 1.66262 1.18524 1.20168 1.00872 0.99041 0.94571 1.20802 0.92515 0.91595 1.00155 1.20912 1.00484 0.99942 0.93646 1.21243 0.96815 0.96683 0.94599 1.17227 0.96543 0.95452 0.93372 1.20846 1.01646 1.00428 0.93388 1.20679 0.95323 0.94276 0.99380 1.20435 1.03297 1.02065 0.89362 1.17656 0.92898 0.91234 0.89775 1.18197 1.00792 0.99106 0.94530 0.92414 0.93153 0.93666 0.84991 0.85515 0.84944 0.85415 0.85775 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.54 -15.31 9.39 -34.44 -0.32 -15.63 16 8 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 9 C 0.25 6.50 5.70 -5.20 -0.03 6.47 16 10 N -0.53 -12.45 2.76 -116.23 -0.32 -12.77 16 11 C 0.56 13.12 8.08 -12.29 -0.10 13.02 16 12 O -0.49 -12.74 17.79 5.20 0.09 -12.65 16 13 C -0.14 -2.71 6.65 -105.63 -0.70 -3.41 16 14 C -0.03 -0.46 10.12 -39.08 -0.40 -0.86 16 15 C -0.13 -1.52 9.85 -39.61 -0.39 -1.91 16 16 C -0.08 -0.87 10.03 -39.19 -0.39 -1.26 16 17 C -0.03 -0.37 5.72 -107.71 -0.62 -0.99 16 18 C -0.14 -1.80 10.05 -39.24 -0.39 -2.20 16 19 C -0.08 -1.04 9.84 -39.63 -0.39 -1.43 16 20 C -0.13 -2.21 10.09 -39.13 -0.39 -2.61 16 21 C 0.18 3.72 6.95 -84.31 -0.59 3.14 16 22 C -0.12 -2.24 5.63 -108.31 -0.61 -2.85 16 23 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.05 1.45 8.02 -51.93 -0.42 1.03 16 25 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 27 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 28 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 30 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.13 2.24 8.06 -52.48 -0.42 1.82 16 LS Contribution 278.87 15.07 4.20 4.20 Total: -1.00 -32.43 278.87 -8.65 -41.08 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -2.92 Total: -2.58 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -5.42 Total: -8.78 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.42 Total: -37.96 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.09 Total: -12.65 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.43 -8.65 -41.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002169344.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.878 kcal (2) G-P(sol) polarization free energy of solvation -32.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds