Wall clock time and date at job start Sun Mar 29 2020 23:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86791 * 120.00405 * 2 1 4 4 H 1.48499 * 109.47581 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47175 * 300.00177 * 3 2 1 6 6 H 1.48502 * 109.47459 * 59.99923 * 3 2 1 7 7 C 1.37879 * 119.99654 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99746 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00272 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47325 * 180.02562 * 9 7 2 11 11 C 1.35933 * 124.84380 * 269.99886 * 10 9 7 12 12 O 1.21687 * 125.99764 * 0.02562 * 11 10 9 13 13 C 1.46769 * 108.00138 * 179.75938 * 11 10 9 14 14 C 1.38411 * 139.04779 * 179.44677 * 13 11 10 15 15 C 1.39413 * 119.70506 * 180.44089 * 14 13 11 16 16 C 1.36964 * 123.14182 * 0.29364 * 15 14 13 17 17 C 1.40500 * 118.93697 * 0.02562 * 16 15 14 18 18 C 1.40511 * 125.78040 * 179.97438 * 17 16 15 19 19 C 1.36814 * 118.50202 * 180.02562 * 18 17 16 20 20 C 1.39481 * 123.25661 * 0.02562 * 19 18 17 21 21 C 1.38217 * 119.99264 * 0.02562 * 20 19 18 22 22 C 1.39162 * 116.10843 * 0.02562 * 21 20 19 23 23 H 0.97008 * 119.99557 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47368 * 59.99283 * 9 7 2 25 25 H 1.09002 * 109.46475 * 299.99986 * 9 7 2 26 26 H 1.08002 * 120.15012 * 0.72536 * 14 13 11 27 27 H 1.08001 * 118.42735 * 180.31394 * 15 14 13 28 28 H 1.07997 * 120.53309 * 180.02562 * 16 15 14 29 29 H 1.07998 * 120.74516 * 0.03931 * 18 17 16 30 30 H 1.07995 * 118.37014 * 179.97438 * 19 18 17 31 31 H 1.08009 * 120.00158 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6127 0.0018 11 6 2.7083 -4.2036 -1.1132 12 8 2.4500 -3.9003 -2.2630 13 6 3.6252 -5.2673 -0.6868 14 6 4.4422 -6.2316 -1.2510 15 6 5.1735 -7.0859 -0.4270 16 6 5.1256 -7.0296 0.9407 17 6 4.3032 -6.0691 1.5531 18 6 4.1453 -5.8851 2.9372 19 6 3.3013 -4.9003 3.3728 20 6 2.5875 -4.0681 2.5106 21 6 2.7148 -4.2181 1.1425 22 6 3.5756 -5.2242 0.7143 23 1 -0.4850 0.8402 -0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 4.5165 -6.3190 -2.3250 27 1 5.8084 -7.8274 -0.8891 28 1 5.7107 -7.7124 1.5388 29 1 4.6783 -6.5069 3.6412 30 1 3.1812 -4.7610 4.4369 31 1 1.9353 -3.3064 2.9121 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002169344.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:11 Heat of formation + Delta-G solvation = 14.482300 kcal Electronic energy + Delta-G solvation = -17628.365064 eV Core-core repulsion = 14839.302829 eV Total energy + Delta-G solvation = -2789.062236 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.084 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.06620 -39.75985 -37.89327 -36.68332 -35.32797 -32.90199 -31.51302 -29.94660 -29.10412 -26.06573 -25.01048 -23.54278 -22.57298 -21.75080 -18.92411 -18.39456 -18.01943 -17.93042 -17.08940 -16.73162 -16.54255 -15.88052 -15.15461 -15.09110 -14.57648 -14.30681 -14.25696 -13.88714 -13.56526 -13.33456 -13.10768 -12.75748 -12.71474 -12.54557 -12.26065 -11.95451 -11.87249 -11.39369 -11.11552 -10.78683 -9.97886 -9.66394 -8.58777 -8.33285 -6.56371 -0.98825 0.06990 0.97631 1.30181 1.32545 1.44271 1.47955 1.85424 2.27821 2.37500 2.90450 3.09936 3.15573 3.61371 3.89839 3.98191 4.20404 4.24756 4.33170 4.41923 4.59550 4.63575 4.81061 4.85072 4.91832 5.09922 5.21253 5.28843 5.34435 5.48056 5.54752 5.74785 5.79010 5.85420 5.96759 6.23839 6.48607 6.89706 7.16425 8.69648 Molecular weight = 253.08amu Principal moments of inertia in cm(-1) A = 0.025925 B = 0.006880 C = 0.006025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.790163 B = 4068.540561 C = 4646.557748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.016 3.984 3 Si 0.976 3.024 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.558 4.558 8 H 0.047 0.953 9 C 0.262 3.738 10 N -0.543 5.543 11 C 0.542 3.458 12 O -0.558 6.558 13 C -0.201 4.201 14 C -0.005 4.005 15 C -0.136 4.136 16 C -0.036 4.036 17 C -0.050 4.050 18 C -0.098 4.098 19 C -0.095 4.095 20 C -0.119 4.119 21 C 0.110 3.890 22 C -0.127 4.127 23 H 0.274 0.726 24 H 0.009 0.991 25 H 0.035 0.965 26 H 0.145 0.855 27 H 0.177 0.823 28 H 0.191 0.809 29 H 0.185 0.815 30 H 0.164 0.836 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.354 -16.289 8.731 22.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.596 4.596 8 H 0.066 0.934 9 C 0.143 3.857 10 N -0.261 5.261 11 C 0.336 3.664 12 O -0.439 6.439 13 C -0.204 4.204 14 C -0.024 4.024 15 C -0.154 4.154 16 C -0.054 4.054 17 C -0.050 4.050 18 C -0.116 4.116 19 C -0.114 4.114 20 C -0.141 4.141 21 C 0.013 3.987 22 C -0.130 4.130 23 H 0.083 0.917 24 H 0.027 0.973 25 H 0.053 0.947 26 H 0.163 0.837 27 H 0.195 0.805 28 H 0.208 0.792 29 H 0.202 0.798 30 H 0.181 0.819 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.921 -15.879 8.049 21.425 hybrid contribution -0.699 1.722 -0.689 1.982 sum 11.222 -14.157 7.360 19.507 Atomic orbital electron populations 1.70037 1.07508 1.28810 1.49599 1.25877 0.95935 1.03112 0.93493 0.85255 0.78359 0.77861 0.78682 1.19654 1.19862 1.18513 1.21544 0.93026 0.91558 1.53456 0.93445 1.18989 0.87165 0.82691 0.96847 1.46141 1.42557 1.32342 1.05061 1.18971 0.81011 0.82634 0.83767 1.90691 1.64121 1.68870 1.20239 1.19915 1.04036 1.01060 0.95422 1.21333 0.89909 0.89504 1.01675 1.21424 1.00215 0.99892 0.93843 1.21940 0.93880 0.94605 0.94940 1.17778 0.97155 0.95954 0.94128 1.21536 0.98528 0.98374 0.93195 1.21065 0.95458 0.94250 1.00587 1.20806 1.02584 1.01883 0.88796 1.18045 0.96586 0.94073 0.89960 1.18331 1.00861 0.99198 0.94587 0.91725 0.97306 0.94660 0.83716 0.80533 0.79213 0.79798 0.81862 0.86193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.23 13.29 21.45 0.28 -55.95 16 2 C 0.02 0.96 5.46 84.66 0.46 1.42 16 3 Si 0.98 45.95 29.54 68.60 2.03 47.98 16 4 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 7 C -0.56 -34.38 9.39 25.60 0.24 -34.13 16 8 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 9 C 0.26 15.53 5.70 85.64 0.49 16.02 16 10 N -0.54 -28.45 2.76 -639.20 -1.77 -30.22 16 11 C 0.54 28.11 8.08 86.29 0.70 28.81 16 12 O -0.56 -32.59 17.79 -4.31 -0.08 -32.67 16 13 C -0.20 -7.96 6.65 -20.52 -0.14 -8.09 16 14 C -0.01 -0.15 10.12 22.59 0.23 0.08 16 15 C -0.14 -2.38 9.85 22.25 0.22 -2.17 16 16 C -0.04 -0.58 10.03 22.52 0.23 -0.36 16 17 C -0.05 -1.23 5.72 -21.86 -0.13 -1.35 16 18 C -0.10 -1.87 10.05 22.49 0.23 -1.65 16 19 C -0.10 -2.24 9.84 22.24 0.22 -2.02 16 20 C -0.12 -4.18 10.09 22.56 0.23 -3.95 16 21 C 0.11 4.75 6.95 38.24 0.27 5.02 16 22 C -0.13 -4.64 5.63 -22.25 -0.13 -4.77 16 23 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 24 H 0.01 0.58 8.02 -2.39 -0.02 0.56 16 25 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 27 H 0.18 1.46 8.06 -2.91 -0.02 1.43 16 28 H 0.19 1.02 8.06 -2.91 -0.02 0.99 16 29 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 30 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 31 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -82.74 278.87 4.73 -78.01 By element: Atomic # 1 Polarization: -1.17 SS G_CDS: 1.15 Total: -0.02 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 3.11 Total: -7.13 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -1.48 Total: -86.17 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.08 Total: -32.67 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -82.74 4.73 -78.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002169344.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.494 kcal (2) G-P(sol) polarization free energy of solvation -82.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds