Wall clock time and date at job start Sun Mar 29 2020 23:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86800 * 119.99701 * 2 1 4 4 H 1.48505 * 109.46938 * 269.99792 * 3 2 1 5 5 H 1.48498 * 109.47372 * 29.99808 * 3 2 1 6 6 H 1.48502 * 109.46984 * 149.99813 * 3 2 1 7 7 C 1.40045 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99644 * 179.97438 * 7 2 1 9 9 C 1.46375 * 119.99892 * 0.02562 * 7 2 1 10 10 O 1.21687 * 120.00127 * 359.97438 * 9 7 2 11 11 N 1.34778 * 119.99463 * 179.97438 * 9 7 2 12 12 C 1.46505 * 119.99353 * 180.02562 * 11 9 7 13 13 C 1.53008 * 109.46856 * 180.02562 * 12 11 9 14 14 O 1.42895 * 109.47006 * 64.99442 * 13 12 11 15 15 C 1.35951 * 116.99758 * 179.97438 * 14 13 12 16 16 C 1.38708 * 120.03040 * 0.28885 * 15 14 13 17 17 C 1.38147 * 119.96935 * 180.25012 * 16 15 14 18 18 C 1.38455 * 120.02958 * 359.46222 * 17 16 15 19 19 F 1.35101 * 119.97206 * 180.29906 * 18 17 16 20 20 C 1.38452 * 120.06193 * 0.28172 * 18 17 16 21 21 C 1.38156 * 120.03063 * 359.97438 * 20 18 17 22 22 H 0.97005 * 120.00016 * 0.02562 * 1 2 3 23 23 H 0.96995 * 120.00605 * 0.02562 * 11 9 7 24 24 H 1.08997 * 109.47700 * 60.00502 * 12 11 9 25 25 H 1.08996 * 109.47102 * 299.99743 * 12 11 9 26 26 H 1.09005 * 109.46539 * 304.99929 * 13 12 11 27 27 H 1.08995 * 109.46786 * 185.00066 * 13 12 11 28 28 H 1.07998 * 120.01328 * 0.02562 * 16 15 14 29 29 H 1.08002 * 119.98838 * 179.74746 * 17 16 15 30 30 H 1.07997 * 119.98751 * 179.97438 * 20 18 17 31 31 H 1.07999 * 120.02057 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5383 1.4403 0.7001 7 6 2.0070 -1.2128 0.0005 8 1 3.0871 -1.2127 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9491 -3.6476 0.0005 12 6 1.2166 -4.9164 0.0000 13 6 2.2109 -6.0793 0.0007 14 8 2.9523 -6.0713 1.2223 15 6 3.8849 -7.0471 1.3846 16 6 4.0857 -7.9885 0.3859 17 6 5.0300 -8.9826 0.5544 18 6 5.7837 -9.0329 1.7148 19 9 6.7112 -10.0020 1.8757 20 6 5.5881 -8.0907 2.7102 21 6 4.6407 -7.0985 2.5466 22 1 -0.4850 0.8401 -0.0004 23 1 2.9191 -3.6476 0.0009 24 1 0.5903 -4.9740 -0.8903 25 1 0.5896 -4.9743 0.8897 26 1 2.8957 -5.9723 -0.8406 27 1 1.6689 -7.0207 -0.0893 28 1 3.5014 -7.9465 -0.5214 29 1 5.1837 -9.7182 -0.2213 30 1 6.1764 -8.1312 3.6150 31 1 4.4885 -6.3634 3.3230 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003160580.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:00 Heat of formation + Delta-G solvation = -125.437961 kcal Electronic energy + Delta-G solvation = -17367.172296 eV Core-core repulsion = 14141.273437 eV Total energy + Delta-G solvation = -3225.898858 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.80888 -41.12862 -39.40348 -38.22116 -35.33910 -34.44266 -32.27889 -31.14298 -29.81808 -28.07113 -24.88351 -23.60543 -22.76274 -21.69054 -19.40285 -19.27413 -18.35680 -17.62224 -17.46456 -17.01764 -16.49972 -16.05180 -15.88009 -15.66595 -15.29049 -14.95746 -14.56034 -14.28012 -14.03003 -13.64257 -13.40222 -13.26254 -13.00442 -12.73511 -12.64891 -12.50936 -12.01562 -11.81845 -11.72920 -10.92699 -10.17637 -9.88294 -9.49265 -9.10255 -8.29027 -6.85261 0.17475 0.21093 1.41124 1.42616 1.58041 2.13763 2.25750 2.47687 2.57992 3.11903 3.33253 3.62540 3.66765 3.82321 3.92417 4.12772 4.16965 4.32124 4.38444 4.51703 4.79133 4.88462 4.92748 5.12547 5.15594 5.25578 5.32457 5.72481 5.87547 6.21206 6.25628 6.39803 6.87226 7.53199 8.48667 8.67357 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.038595 B = 0.003711 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.311864 B = 7543.050588 C = 8007.086872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 0.999 3.001 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.250 1.250 7 C -0.574 4.574 8 H 0.086 0.914 9 C 0.537 3.463 10 O -0.633 6.633 11 N -0.753 5.753 12 C 0.131 3.869 13 C 0.062 3.938 14 O -0.326 6.326 15 C 0.110 3.890 16 C -0.182 4.182 17 C -0.110 4.110 18 C 0.038 3.962 19 F -0.149 7.149 20 C -0.110 4.110 21 C -0.137 4.137 22 H 0.275 0.725 23 H 0.395 0.605 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.159 0.841 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.231 -15.879 1.262 20.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.174 1.174 7 C -0.611 4.611 8 H 0.104 0.896 9 C 0.341 3.659 10 O -0.521 6.521 11 N -0.408 5.408 12 C 0.006 3.994 13 C -0.013 4.013 14 O -0.240 6.240 15 C 0.064 3.936 16 C -0.201 4.201 17 C -0.129 4.129 18 C 0.018 3.982 19 F -0.128 7.128 20 C -0.129 4.129 21 C -0.155 4.155 22 H 0.085 0.915 23 H 0.229 0.771 24 H 0.089 0.911 25 H 0.057 0.943 26 H 0.106 0.894 27 H 0.122 0.878 28 H 0.176 0.824 29 H 0.176 0.824 30 H 0.177 0.823 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.150 -15.712 1.393 19.317 hybrid contribution 0.480 0.410 -0.057 0.634 sum 11.630 -15.303 1.337 19.267 Atomic orbital electron populations 1.70189 1.09514 1.28962 1.36493 1.26983 0.95544 1.04982 0.91192 0.85008 0.78708 0.75030 0.79463 1.18474 1.19792 1.17360 1.21440 0.94716 0.90208 1.54733 0.89582 1.18593 0.86817 0.84423 0.76049 1.90550 1.16152 1.88019 1.57354 1.45763 1.09285 1.04630 1.81130 1.21074 0.94131 0.83222 1.00929 1.23152 0.93878 0.99008 0.85270 1.86186 1.48688 1.48495 1.40648 1.19359 0.90158 0.88852 0.95205 1.21373 1.02116 0.96132 1.00473 1.21183 0.95172 0.99553 0.96972 1.17792 0.92769 0.90251 0.97345 1.91468 1.63954 1.61360 1.95998 1.21138 0.98617 0.93453 0.99674 1.20505 0.96894 1.00804 0.97337 0.91543 0.77132 0.91107 0.94348 0.89435 0.87834 0.82393 0.82373 0.82294 0.83814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.58 11.83 21.84 0.26 -50.32 16 2 C 0.03 1.57 5.50 85.30 0.47 2.04 16 3 Si 1.00 41.03 29.56 68.60 2.03 43.06 16 4 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 6 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 7 C -0.57 -32.81 9.54 24.83 0.24 -32.57 16 8 H 0.09 4.42 7.85 -2.91 -0.02 4.40 16 9 C 0.54 31.33 7.75 86.36 0.67 32.00 16 10 O -0.63 -42.58 15.02 -4.31 -0.06 -42.65 16 11 N -0.75 -33.63 5.50 -467.39 -2.57 -36.20 16 12 C 0.13 4.77 6.06 86.38 0.52 5.29 16 13 C 0.06 1.51 4.87 71.98 0.35 1.86 16 14 O -0.33 -9.13 10.08 -92.99 -0.94 -10.07 16 15 C 0.11 2.57 6.69 22.50 0.15 2.72 16 16 C -0.18 -3.39 9.04 22.36 0.20 -3.19 16 17 C -0.11 -1.92 10.02 22.30 0.22 -1.69 16 18 C 0.04 0.74 7.30 22.37 0.16 0.90 16 19 F -0.15 -3.10 17.27 44.97 0.78 -2.32 16 20 C -0.11 -2.07 10.02 22.30 0.22 -1.85 16 21 C -0.14 -2.96 9.99 22.36 0.22 -2.73 16 22 H 0.27 15.26 8.29 -92.70 -0.77 14.49 16 23 H 0.40 15.55 8.45 -92.71 -0.78 14.77 16 24 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 25 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.09 1.81 7.65 -2.38 -0.02 1.79 16 27 H 0.10 1.87 7.67 -2.39 -0.02 1.85 16 28 H 0.16 2.22 6.30 -2.91 -0.02 2.20 16 29 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 30 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 31 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -76.75 284.01 3.31 -73.44 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.38 Total: 22.27 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 3.44 Total: 2.79 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -2.31 Total: -86.51 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -1.00 Total: -52.72 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.78 Total: -2.32 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -76.75 3.31 -73.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003160580.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.999 kcal (2) G-P(sol) polarization free energy of solvation -76.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds