Wall clock time and date at job start Sun Mar 29 2020 23:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86799 * 119.99936 * 2 1 4 4 H 1.48494 * 109.47325 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47407 * 300.00801 * 3 2 1 6 6 H 1.48502 * 109.46666 * 60.00455 * 3 2 1 7 7 C 1.40052 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99580 * 179.97438 * 7 2 1 9 9 C 1.46366 * 120.00362 * 359.97438 * 7 2 1 10 10 O 1.21694 * 119.99631 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00216 * 180.02562 * 9 7 2 12 12 C 1.46498 * 120.00184 * 179.97438 * 11 9 7 13 13 H 1.09001 * 109.46927 * 34.99893 * 12 11 9 14 14 C 1.52999 * 109.47179 * 155.00075 * 12 11 9 15 15 C 1.50701 * 109.47187 * 294.99753 * 14 12 11 16 16 C 1.34673 * 126.58790 * 85.02189 * 15 14 12 17 17 N 1.34129 * 108.02137 * 179.97438 * 16 15 14 18 18 C 1.30497 * 109.25330 * 0.02562 * 17 16 15 19 19 N 1.35037 * 108.70319 * 359.76811 * 18 17 16 20 20 H 0.97008 * 126.40403 * 180.26411 * 19 18 17 21 21 C 1.50702 * 109.47272 * 275.00217 * 12 11 9 22 22 O 1.20822 * 119.99854 * 359.72166 * 21 12 11 23 23 O 1.34234 * 119.99997 * 180.02562 * 21 12 11 24 24 H 0.96996 * 120.00223 * 359.97438 * 1 2 3 25 25 H 0.96998 * 120.00092 * 359.97438 * 11 9 7 26 26 H 1.08996 * 109.47574 * 55.00129 * 14 12 11 27 27 H 1.09001 * 109.46724 * 175.00381 * 14 12 11 28 28 H 1.08000 * 125.98851 * 359.97284 * 16 15 14 29 29 H 1.08002 * 125.64504 * 180.02562 * 18 17 16 30 30 H 0.96695 * 116.99910 * 179.72143 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7006 1.3465 -0.0006 5 1 1.8818 2.3966 -1.2124 6 1 1.8819 2.3963 1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0005 12 6 1.2166 -4.9164 0.0000 13 1 0.3057 -4.8103 -0.5891 14 6 2.0936 -6.0119 -0.6097 15 6 2.3499 -5.7002 -2.0617 16 6 3.3174 -4.9025 -2.5528 17 7 3.2057 -4.8894 -3.8894 18 6 2.2055 -5.6484 -4.2451 19 7 1.6471 -6.1772 -3.1351 20 1 0.8888 -6.7814 -3.1040 21 6 0.8587 -5.2892 1.4157 22 8 1.1866 -4.5716 2.3306 23 8 0.1809 -6.4217 1.6605 24 1 -0.4850 0.8400 0.0004 25 1 2.9190 -3.6477 -0.0009 26 1 3.0423 -6.0576 -0.0749 27 1 1.5842 -6.9721 -0.5287 28 1 4.0540 -4.3670 -1.9722 29 1 1.8809 -5.8274 -5.2595 30 1 -0.0223 -6.6206 2.5847 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034519329.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:03 Heat of formation + Delta-G solvation = -72.505972 kcal Electronic energy + Delta-G solvation = -18602.001037 eV Core-core repulsion = 15398.317444 eV Total energy + Delta-G solvation = -3203.683594 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.089 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.85827 -39.87689 -37.35630 -35.59238 -34.58681 -32.50730 -32.26347 -30.82102 -28.38437 -26.06636 -24.46777 -21.40404 -21.33836 -20.62531 -19.52910 -17.90227 -17.66126 -17.17674 -16.29141 -15.50554 -15.02624 -14.93820 -14.52469 -14.13501 -13.92955 -13.47134 -13.15405 -12.62358 -12.42620 -12.37225 -11.99857 -11.44103 -11.10433 -11.04643 -10.97751 -10.45986 -10.19487 -10.11991 -9.81210 -9.76683 -8.85121 -8.16678 -7.81530 -7.66106 -6.18985 -4.62865 2.16090 2.72559 3.15751 3.23079 3.24480 3.29101 3.35456 3.47859 4.11632 4.55496 4.63150 4.80158 4.99343 5.08467 5.21123 5.54791 5.66219 5.73275 5.83703 5.93053 6.06633 6.39859 6.87017 6.94308 7.45218 7.51483 7.76159 7.94005 8.25404 8.29414 8.38269 9.03614 9.42047 10.56998 10.75398 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.017131 B = 0.008071 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.027815 B = 3468.440717 C = 4649.378744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.535 4.535 8 H 0.070 0.930 9 C 0.561 3.439 10 O -0.580 6.580 11 N -0.735 5.735 12 C 0.175 3.825 13 H 0.112 0.888 14 C -0.043 4.043 15 C -0.018 4.018 16 C -0.003 4.003 17 N -0.493 5.493 18 C 0.179 3.821 19 N -0.567 5.567 20 H 0.417 0.583 21 C 0.457 3.543 22 O -0.493 6.493 23 O -0.529 6.529 24 H 0.268 0.732 25 H 0.387 0.613 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.168 0.832 29 H 0.204 0.796 30 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.305 -14.125 -3.451 14.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.572 4.572 8 H 0.089 0.911 9 C 0.366 3.634 10 O -0.463 6.463 11 N -0.390 5.390 12 C 0.065 3.935 13 H 0.129 0.871 14 C -0.082 4.082 15 C -0.133 4.133 16 C -0.151 4.151 17 N -0.212 5.212 18 C -0.105 4.105 19 N -0.170 5.170 20 H 0.254 0.746 21 C 0.295 3.705 22 O -0.378 6.378 23 O -0.341 6.341 24 H 0.078 0.922 25 H 0.220 0.780 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.186 0.814 29 H 0.221 0.779 30 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 2.978 -13.211 -4.147 14.163 hybrid contribution -0.315 0.012 1.258 1.296 sum 2.663 -13.199 -2.889 13.772 Atomic orbital electron populations 1.70027 1.07105 1.27201 1.35239 1.25716 0.94646 1.00397 0.92547 0.86284 0.80598 0.81587 0.78133 1.18610 1.20161 1.20198 1.20844 0.93710 0.88977 1.53673 0.91139 1.18245 0.87169 0.82209 0.75755 1.90596 1.14150 1.86433 1.55089 1.46070 1.08653 1.02989 1.81320 1.19976 0.98529 0.87173 0.87839 0.87055 1.20201 1.01323 0.97951 0.88730 1.20896 0.98330 1.04523 0.89534 1.22069 1.01021 1.01427 0.90585 1.70266 1.18172 1.19320 1.13433 1.24880 0.94770 0.98059 0.92766 1.43212 1.27970 1.38917 1.06946 0.74576 1.24846 0.74110 0.77378 0.94146 1.90712 1.50239 1.50231 1.46577 1.84554 1.70617 1.42929 1.35960 0.92175 0.77984 0.88778 0.89237 0.81432 0.77899 0.74276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.40 11.83 55.55 0.66 -22.74 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 3 Si 0.91 20.70 29.56 -169.99 -5.02 15.67 16 4 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -15.35 9.54 -35.63 -0.34 -15.69 16 8 H 0.07 1.86 7.85 -52.49 -0.41 1.44 16 9 C 0.56 15.95 7.58 -12.99 -0.10 15.85 16 10 O -0.58 -18.76 14.68 5.19 0.08 -18.68 16 11 N -0.73 -16.01 4.08 -56.35 -0.23 -16.24 16 12 C 0.18 3.16 2.47 -69.08 -0.17 2.98 16 13 H 0.11 2.24 7.58 -51.93 -0.39 1.84 16 14 C -0.04 -0.54 5.28 -27.88 -0.15 -0.69 16 15 C -0.02 -0.25 6.29 -81.60 -0.51 -0.76 16 16 C 0.00 -0.05 11.40 -17.81 -0.20 -0.25 16 17 N -0.49 -8.08 11.25 -14.67 -0.17 -8.25 16 18 C 0.18 2.25 13.04 -90.38 -1.18 1.07 16 19 N -0.57 -6.51 6.15 -10.30 -0.06 -6.57 16 20 H 0.42 3.32 8.96 -40.82 -0.37 2.95 16 21 C 0.46 8.42 7.66 36.01 0.28 8.69 16 22 O -0.49 -11.21 17.08 -18.75 -0.32 -11.53 16 23 O -0.53 -7.23 13.23 -39.27 -0.52 -7.75 16 24 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 25 H 0.39 7.47 8.41 -40.82 -0.34 7.13 16 26 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.09 0.90 7.99 -51.93 -0.42 0.49 16 28 H 0.17 2.50 8.00 -52.49 -0.42 2.08 16 29 H 0.20 1.68 8.06 -52.49 -0.42 1.25 16 30 H 0.40 3.82 9.10 45.56 0.41 4.24 16 LS Contribution 280.33 15.07 4.22 4.22 Total: -1.00 -40.31 280.33 -5.75 -46.06 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -1.91 Total: 12.23 kcal Atomic # 6 Polarization: 16.05 SS G_CDS: -2.47 Total: 13.58 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.20 Total: -53.80 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.76 Total: -37.96 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -40.31 -5.75 -46.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034519329.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.449 kcal (2) G-P(sol) polarization free energy of solvation -40.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds