Wall clock time and date at job start Sun Mar 29 2020 23:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48505 * 109.46876 * 30.00467 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99932 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99788 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 N 1.46499 * 109.46992 * 179.97438 * 13 11 10 15 15 C 1.34227 * 125.74271 * 125.00123 * 14 13 11 16 16 C 1.38122 * 107.41043 * 179.97438 * 15 14 13 17 17 C 1.47288 * 126.42760 * 179.97438 * 16 15 14 18 18 O 1.21526 * 119.99905 * 359.97438 * 17 16 15 19 19 O 1.34755 * 120.00203 * 179.97438 * 17 16 15 20 20 C 1.41340 * 107.14572 * 359.97438 * 16 15 14 21 21 N 1.30431 * 108.01164 * 359.74720 * 20 16 15 22 22 H 0.97009 * 119.99937 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 24 24 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 25 25 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 26 26 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 27 27 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 28 28 H 1.08001 * 126.29201 * 359.95151 * 15 14 13 29 29 H 0.96695 * 117.00368 * 180.02562 * 19 17 16 30 30 H 1.08001 * 125.99639 * 180.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9997 -2.5753 -0.0022 11 6 5.3248 -2.8216 -0.0024 12 8 6.1130 -1.8998 -0.0021 13 6 5.8271 -4.2424 -0.0041 14 7 7.2921 -4.2424 -0.0046 15 6 8.0765 -4.8683 0.8869 16 6 9.3875 -4.6192 0.5306 17 6 10.5907 -5.1072 1.2260 18 8 10.4800 -5.8014 2.2173 19 8 11.8142 -4.7840 0.7630 20 6 9.3579 -3.8082 -0.6266 21 7 8.1093 -3.5958 -0.9383 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6805 0.8889 24 1 3.8745 -0.6801 -0.8911 25 1 3.3694 -3.3126 -0.0021 26 1 5.4637 -4.7574 0.8852 27 1 5.4639 -4.7552 -0.8948 28 1 7.7436 -5.4580 1.7283 29 1 12.5739 -5.1279 1.2526 30 1 10.2182 -3.4341 -1.1617 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036777980.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:21 Heat of formation + Delta-G solvation = -46.978191 kcal Electronic energy + Delta-G solvation = -17484.580434 eV Core-core repulsion = 14282.003808 eV Total energy + Delta-G solvation = -3202.576626 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.089 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.59524 -39.80654 -38.95948 -36.11334 -34.52196 -33.58075 -32.45459 -30.61548 -29.07024 -27.16986 -23.99615 -22.53887 -21.36417 -20.57490 -20.12885 -18.32530 -17.63452 -17.45831 -16.34190 -16.08268 -15.70695 -15.43297 -14.98364 -14.53583 -14.35869 -13.82996 -13.63422 -13.06153 -12.96428 -12.88542 -12.43062 -11.99427 -11.67735 -11.30039 -11.12387 -10.84107 -10.45595 -10.07944 -10.00290 -9.59541 -9.38011 -8.91652 -8.87194 -8.34704 -6.29492 -4.32882 1.17568 1.95994 2.09517 2.88900 3.06547 3.11435 3.21754 3.28593 3.36412 3.61372 4.26398 4.42899 4.48459 4.80162 4.91403 5.03166 5.04200 5.06248 5.30239 5.66825 6.28135 6.35846 6.50110 6.68187 6.94843 7.00989 7.25693 7.42819 7.84822 7.96065 8.33498 8.59272 8.72093 9.29704 10.82199 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.049796 B = 0.003777 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.154532 B = 7411.534700 C = 7634.268282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.700 5.700 11 C 0.487 3.513 12 O -0.527 6.527 13 C 0.106 3.894 14 N -0.337 5.337 15 C 0.141 3.859 16 C -0.291 4.291 17 C 0.566 3.434 18 O -0.534 6.534 19 O -0.514 6.514 20 C 0.093 3.907 21 N -0.262 5.262 22 H 0.269 0.731 23 H 0.026 0.974 24 H 0.023 0.977 25 H 0.398 0.602 26 H 0.129 0.871 27 H 0.121 0.879 28 H 0.192 0.808 29 H 0.412 0.588 30 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.811 -11.896 0.696 20.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.585 4.585 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.350 5.350 11 C 0.269 3.731 12 O -0.404 6.404 13 C -0.019 4.019 14 N -0.114 5.114 15 C -0.012 4.012 16 C -0.304 4.304 17 C 0.412 3.588 18 O -0.425 6.425 19 O -0.325 6.325 20 C -0.096 4.096 21 N -0.079 5.079 22 H 0.079 0.921 23 H 0.044 0.956 24 H 0.041 0.959 25 H 0.232 0.768 26 H 0.147 0.853 27 H 0.139 0.861 28 H 0.209 0.791 29 H 0.270 0.730 30 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 15.825 -10.519 -0.101 19.003 hybrid contribution 0.958 -0.073 0.933 1.340 sum 16.783 -10.592 0.832 19.864 Atomic orbital electron populations 1.69873 1.06216 1.27568 1.49048 1.24786 0.94796 0.99198 0.93736 0.86820 0.80518 0.83225 0.79152 1.19748 1.20791 1.18579 1.21049 0.88309 0.95303 1.53814 0.90140 1.19538 0.95370 0.78032 0.97003 1.46115 1.04953 1.11549 1.72374 1.20246 0.83899 0.90005 0.78970 1.90763 1.55212 1.45182 1.49221 1.21808 0.74763 0.98552 1.06789 1.48040 1.06309 1.36736 1.20316 1.22943 0.89690 0.94583 0.93943 1.19133 0.90604 1.15949 1.04729 1.19656 0.82467 0.75906 0.80779 1.90882 1.87492 1.37746 1.26388 1.84555 1.16447 1.72733 1.58728 1.24220 0.95475 0.95220 0.94701 1.77464 1.01366 1.16432 1.12684 0.92137 0.95568 0.95920 0.76779 0.85287 0.86091 0.79124 0.73030 0.78739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 13.96 55.43 0.77 -25.07 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.55 -14.42 9.83 -34.44 -0.34 -14.76 16 8 H 0.08 2.19 7.84 -52.49 -0.41 1.77 16 9 C 0.22 5.22 4.50 -5.19 -0.02 5.20 16 10 N -0.70 -12.78 5.55 -61.47 -0.34 -13.12 16 11 C 0.49 8.39 7.86 -10.98 -0.09 8.31 16 12 O -0.53 -11.66 15.71 5.56 0.09 -11.58 16 13 C 0.11 1.18 6.97 -5.19 -0.04 1.14 16 14 N -0.34 -4.44 3.37 -61.97 -0.21 -4.64 16 15 C 0.14 1.60 11.25 -16.55 -0.19 1.41 16 16 C -0.29 -3.54 6.13 -105.08 -0.64 -4.18 16 17 C 0.57 6.53 8.33 34.41 0.29 6.82 16 18 O -0.53 -7.40 17.69 -19.29 -0.34 -7.74 16 19 O -0.51 -4.32 13.28 -40.64 -0.54 -4.86 16 20 C 0.09 1.18 11.87 -16.97 -0.20 0.97 16 21 N -0.26 -4.02 11.56 30.87 0.36 -3.66 16 22 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 23 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 24 H 0.02 0.57 7.57 -51.93 -0.39 0.17 16 25 H 0.40 6.01 8.32 -40.82 -0.34 5.67 16 26 H 0.13 0.89 8.06 -51.93 -0.42 0.47 16 27 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.19 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.41 1.54 9.11 45.56 0.42 1.95 16 30 H 0.20 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 282.19 15.07 4.25 4.25 Total: -1.00 -36.89 282.19 -3.91 -40.80 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -1.96 Total: 2.25 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -1.33 Total: 6.99 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.58 Total: -46.50 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.79 Total: -24.18 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -36.89 -3.91 -40.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036777980.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.177 kcal (2) G-P(sol) polarization free energy of solvation -36.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds