Wall clock time and date at job start Sun Mar 29 2020 23:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47224 * 2 1 4 4 N 1.46499 * 109.46716 * 179.97438 * 3 2 1 5 5 C 1.36884 * 119.99688 * 264.67189 * 4 3 2 6 6 H 1.08007 * 120.00239 * 127.98348 * 5 4 3 7 7 C 1.39011 * 120.00241 * 307.97784 * 5 4 3 8 8 N 1.31397 * 119.99630 * 4.04340 * 7 5 4 9 9 Si 1.86797 * 120.00004 * 184.04203 * 7 5 4 10 10 H 1.48495 * 109.47199 * 90.00434 * 9 7 5 11 11 H 1.48503 * 109.46986 * 210.00149 * 9 7 5 12 12 H 1.48494 * 109.47282 * 330.00180 * 9 7 5 13 13 C 1.34768 * 120.00216 * 84.67816 * 4 3 2 14 14 O 1.21742 * 120.00236 * 4.09493 * 13 4 3 15 15 C 1.46462 * 120.00101 * 184.10239 * 13 4 3 16 16 S 1.75822 * 125.46077 * 352.63643 * 15 13 4 17 17 C 1.70615 * 91.56758 * 180.02562 * 16 15 13 18 18 C 1.33841 * 110.96804 * 359.74838 * 17 16 15 19 19 C 1.36768 * 125.46189 * 172.66225 * 15 13 4 20 20 C 1.50702 * 123.36360 * 359.95549 * 19 15 13 21 21 H 1.09003 * 109.47439 * 300.00510 * 1 2 3 22 22 H 1.09007 * 109.46918 * 60.00205 * 1 2 3 23 23 H 1.08995 * 109.47668 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46970 * 239.99483 * 2 1 3 25 25 H 1.09004 * 109.46414 * 119.99737 * 2 1 3 26 26 H 1.08999 * 109.46869 * 59.99588 * 3 2 1 27 27 H 1.08994 * 109.46788 * 299.99859 * 3 2 1 28 28 H 0.97002 * 119.99645 * 179.97438 * 8 7 5 29 29 H 1.08001 * 124.51535 * 180.02562 * 17 16 15 30 30 H 1.08006 * 122.44435 * 180.23191 * 18 17 16 31 31 H 1.08994 * 109.47092 * 89.99793 * 20 19 15 32 32 H 1.09002 * 109.47289 * 210.00276 * 20 19 15 33 33 H 1.09004 * 109.46754 * 330.00132 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1889 1.5526 1.1813 6 1 4.9573 0.8352 1.4293 7 6 3.8946 2.5878 2.0610 8 7 2.9071 3.4135 1.7971 9 14 4.9029 2.8052 3.6184 10 1 6.0548 3.7005 3.3414 11 1 4.0534 3.4052 4.6784 12 1 5.4021 1.4828 4.0735 13 6 4.1794 1.3339 -1.1612 14 8 3.5736 1.3111 -2.2169 15 6 5.6412 1.2433 -1.1537 16 16 6.6685 1.4443 0.2590 17 6 8.0759 1.1819 -0.6690 18 6 7.7684 0.9547 -1.9517 19 6 6.4260 0.9892 -2.2446 20 6 5.8737 0.7633 -3.6284 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8901 26 1 1.6766 1.9563 0.8900 27 1 1.6767 1.9562 -0.8900 28 1 2.7015 4.1357 2.4111 29 1 9.0807 1.1930 -0.2733 30 1 8.5205 0.7619 -2.7024 31 1 5.8033 1.7169 -4.1516 32 1 6.5353 0.0946 -4.1791 33 1 4.8828 0.3149 -3.5554 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044372880.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:21 Heat of formation + Delta-G solvation = -17.724045 kcal Electronic energy + Delta-G solvation = -16965.949719 eV Core-core repulsion = 14310.934863 eV Total energy + Delta-G solvation = -2655.014856 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.80761 -37.07527 -34.97638 -33.00394 -31.42235 -30.03466 -27.64416 -25.84026 -24.46505 -22.56856 -21.09685 -19.72732 -18.47952 -17.26704 -16.13891 -15.27011 -14.71782 -14.49485 -14.11017 -14.00478 -13.70652 -12.99296 -12.63355 -12.39975 -12.34119 -11.75182 -11.63195 -11.39523 -11.33470 -11.29285 -11.09405 -11.00790 -10.83418 -10.43340 -10.38691 -9.80789 -9.74344 -8.99501 -8.57232 -7.91509 -7.61574 -7.34629 -6.55442 -4.46372 1.49530 2.56767 2.96884 3.08692 3.10332 3.13932 3.22391 3.91744 4.37217 4.73226 4.83782 5.57996 5.77587 5.80550 5.92453 5.96519 6.07040 6.11782 6.32417 6.35498 6.51292 6.53419 6.65660 6.66663 6.75482 6.80607 7.07330 7.12960 7.19832 7.30375 7.44163 7.92234 8.18148 8.83104 9.37046 9.81323 10.42302 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.016301 B = 0.011892 C = 0.007427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.243217 B = 2353.946742 C = 3769.102554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.122 3.878 4 N -0.439 5.439 5 C -0.345 4.345 6 H 0.097 0.903 7 C 0.065 3.935 8 N -0.846 5.846 9 Si 0.901 3.099 10 H -0.265 1.265 11 H -0.276 1.276 12 H -0.260 1.260 13 C 0.546 3.454 14 O -0.588 6.588 15 C -0.224 4.224 16 S 0.275 5.725 17 C -0.322 4.322 18 C -0.152 4.152 19 C -0.072 4.072 20 C -0.088 4.088 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.044 0.956 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.105 0.895 27 H 0.053 0.947 28 H 0.276 0.724 29 H 0.145 0.855 30 H 0.119 0.881 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.714 -3.339 -0.009 4.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C -0.001 4.001 4 N -0.157 5.157 5 C -0.479 4.479 6 H 0.114 0.886 7 C -0.145 4.145 8 N -0.479 5.479 9 Si 0.726 3.274 10 H -0.190 1.190 11 H -0.202 1.202 12 H -0.184 1.184 13 C 0.336 3.664 14 O -0.475 6.475 15 C -0.345 4.345 16 S 0.550 5.450 17 C -0.459 4.459 18 C -0.184 4.184 19 C -0.087 4.087 20 C -0.147 4.147 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.123 0.877 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.163 0.837 30 H 0.137 0.863 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.118 -2.855 1.123 4.374 hybrid contribution 1.018 -0.072 -0.668 1.219 sum 4.135 -2.926 0.455 5.086 Atomic orbital electron populations 1.21647 0.96492 1.00428 1.01430 1.21876 0.94823 0.99519 1.01261 1.21455 0.81072 0.94210 1.03406 1.43187 1.04866 1.63230 1.04369 1.19282 1.19208 1.12116 0.97281 0.88621 1.25654 0.95494 0.93951 0.99435 1.69759 1.25936 1.15154 1.37017 0.86283 0.80366 0.79914 0.80885 1.18982 1.20155 1.18353 1.17361 0.84687 0.80009 0.84351 1.90617 1.69130 1.56685 1.31044 1.24538 0.98244 1.14563 0.97131 1.84365 0.89942 1.62821 1.07914 1.26370 1.07868 1.10021 1.01621 1.19589 0.95301 1.07234 0.96255 1.19291 0.92206 1.01311 0.95909 1.20488 1.01829 1.01173 0.91209 0.92938 0.93128 0.93665 0.92971 0.92377 0.87703 0.92845 0.91333 0.83714 0.86320 0.91960 0.93223 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.91 37.16 0.37 -1.98 16 2 C -0.14 -2.75 6.22 -26.73 -0.17 -2.91 16 3 C 0.12 2.86 4.87 -4.04 -0.02 2.84 16 4 N -0.44 -11.02 2.47 -116.37 -0.29 -11.31 16 5 C -0.34 -8.40 6.70 -15.01 -0.10 -8.50 16 6 H 0.10 2.25 5.51 -34.02 -0.19 2.07 16 7 C 0.07 1.57 5.34 -17.45 -0.09 1.48 16 8 N -0.85 -21.27 11.26 55.50 0.62 -20.64 16 9 Si 0.90 18.25 29.56 -169.99 -5.02 13.23 16 10 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 11 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 12 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 13 C 0.55 13.92 7.53 -12.95 -0.10 13.82 16 14 O -0.59 -15.72 14.00 5.15 0.07 -15.65 16 15 C -0.22 -5.13 6.30 -36.80 -0.23 -5.36 16 16 S 0.27 5.54 18.41 -107.50 -1.98 3.56 16 17 C -0.32 -5.71 10.92 29.19 0.32 -5.39 16 18 C -0.15 -2.77 9.97 -41.42 -0.41 -3.18 16 19 C -0.07 -1.49 5.91 -105.44 -0.62 -2.11 16 20 C -0.09 -1.64 9.46 36.01 0.34 -1.30 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.11 2.57 5.84 -51.93 -0.30 2.27 16 27 H 0.05 1.32 7.53 -51.93 -0.39 0.92 16 28 H 0.28 6.51 8.31 -40.82 -0.34 6.17 16 29 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16 30 H 0.12 1.83 8.06 -52.48 -0.42 1.41 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 1.77 6.21 -51.93 -0.32 1.45 16 LS Contribution 286.67 15.07 4.32 4.32 Total: -1.00 -27.15 286.67 -7.13 -34.29 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -4.14 Total: 4.80 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -0.72 Total: -12.60 kcal Atomic # 7 Polarization: -32.29 SS G_CDS: 0.34 Total: -31.95 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.07 Total: -15.65 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.02 Total: 13.23 kcal Atomic # 16 Polarization: 5.54 SS G_CDS: -1.98 Total: 3.56 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.15 -7.13 -34.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044372880.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.565 kcal (2) G-P(sol) polarization free energy of solvation -27.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds