Wall clock time and date at job start Sun Mar 29 2020 23:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47237 * 2 1 4 4 N 1.46504 * 109.47120 * 180.02562 * 3 2 1 5 5 C 1.37092 * 119.99455 * 263.43890 * 4 3 2 6 6 H 1.08000 * 119.99591 * 188.05534 * 5 4 3 7 7 C 1.38953 * 120.00409 * 8.06445 * 5 4 3 8 8 N 1.31411 * 119.99692 * 26.04842 * 7 5 4 9 9 Si 1.86796 * 119.99958 * 206.04714 * 7 5 4 10 10 H 1.48497 * 109.47275 * 84.98391 * 9 7 5 11 11 H 1.48500 * 109.47325 * 204.98611 * 9 7 5 12 12 H 1.48506 * 109.47195 * 324.98539 * 9 7 5 13 13 C 1.34775 * 120.00057 * 83.43719 * 4 3 2 14 14 O 1.21287 * 119.99797 * 179.97438 * 13 4 3 15 15 C 1.50698 * 120.00035 * 0.02562 * 13 4 3 16 16 C 1.50704 * 109.47066 * 179.97438 * 15 13 4 17 17 C 1.38422 * 122.53873 * 89.99830 * 16 15 13 18 18 C 1.33391 * 114.91642 * 179.97438 * 17 16 15 19 19 S 1.75882 * 109.59544 * 359.97438 * 18 17 16 20 20 C 1.33391 * 122.53742 * 269.97143 * 16 15 13 21 21 H 1.09004 * 109.47083 * 300.00455 * 1 2 3 22 22 H 1.08999 * 109.47410 * 59.99702 * 1 2 3 23 23 H 1.09001 * 109.47699 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46815 * 240.00427 * 2 1 3 25 25 H 1.08999 * 109.47145 * 119.99816 * 2 1 3 26 26 H 1.08996 * 109.46851 * 59.99927 * 3 2 1 27 27 H 1.08999 * 109.46903 * 299.99965 * 3 2 1 28 28 H 0.97002 * 119.99384 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.47694 * 59.99310 * 15 13 4 30 30 H 1.09007 * 109.46660 * 299.99200 * 15 13 4 31 31 H 1.07995 * 122.54462 * 359.70054 * 17 16 15 32 32 H 1.07998 * 125.20188 * 179.97438 * 18 17 16 33 33 H 1.08002 * 125.19790 * 0.06235 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1909 1.5780 1.1787 6 1 5.2629 1.7087 1.1679 7 6 3.5069 1.5469 2.3878 8 7 2.3629 0.9068 2.4792 9 14 4.2136 2.4151 3.8832 10 1 3.8171 3.8459 3.8582 11 1 3.6908 1.7780 5.1185 12 1 5.6949 2.3115 3.8616 13 6 4.1784 1.3093 -1.1605 14 8 5.3913 1.3097 -1.1610 15 6 3.4244 1.1609 -2.4568 16 6 4.4033 1.0306 -3.5952 17 6 4.8869 -0.1931 -4.0249 18 6 5.7453 -0.1316 -5.0441 19 16 5.9812 1.5461 -5.5163 20 6 4.8688 2.0858 -4.2654 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.8853 0.8854 3.3232 29 1 2.7980 2.0386 -2.6153 30 1 2.7975 0.2702 -2.4125 31 1 4.5951 -1.1265 -3.5668 32 1 6.2224 -0.9820 -5.5084 33 1 4.6034 3.1142 -4.0696 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044379510.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:43 Heat of formation + Delta-G solvation = -12.583947 kcal Electronic energy + Delta-G solvation = -16681.019124 eV Core-core repulsion = 14026.227159 eV Total energy + Delta-G solvation = -2654.791965 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.69476 -38.72155 -37.02063 -34.22621 -33.09655 -31.92280 -29.12512 -27.39895 -26.08801 -24.02582 -22.35166 -21.01492 -19.48127 -18.80707 -18.33455 -17.92662 -16.49123 -16.28860 -15.90633 -15.47601 -15.26799 -14.54691 -14.13236 -13.90514 -13.73499 -13.61481 -13.37888 -13.11492 -12.98363 -12.68062 -12.55287 -12.47938 -12.12038 -12.02280 -11.92569 -11.64058 -11.29529 -10.72171 -10.30743 -9.64553 -9.62040 -9.17879 -8.30220 -5.78763 0.16161 0.84460 1.10054 1.36780 1.43325 1.52738 1.81659 2.07703 2.32261 3.08167 3.23624 4.01831 4.09190 4.19655 4.35154 4.43617 4.58446 4.59584 4.67367 4.73369 4.82669 4.93544 5.12424 5.17313 5.27618 5.41400 5.49180 5.52658 5.63571 5.66585 5.98064 6.13279 6.59365 7.24689 7.56769 8.14273 8.67063 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.027168 B = 0.006129 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.393386 B = 4567.493388 C = 5302.586979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.119 4.119 3 C 0.126 3.874 4 N -0.455 5.455 5 C -0.352 4.352 6 H 0.067 0.933 7 C 0.009 3.991 8 N -0.861 5.861 9 Si 0.974 3.026 10 H -0.270 1.270 11 H -0.272 1.272 12 H -0.283 1.283 13 C 0.434 3.566 14 O -0.634 6.634 15 C -0.063 4.063 16 C -0.088 4.088 17 C -0.142 4.142 18 C -0.211 4.211 19 S 0.106 5.894 20 C -0.221 4.221 21 H 0.046 0.954 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.038 0.962 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.273 0.727 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.140 0.860 32 H 0.190 0.810 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.733 -0.405 -11.212 11.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.158 4.158 3 C 0.003 3.997 4 N -0.173 5.173 5 C -0.480 4.480 6 H 0.085 0.915 7 C -0.195 4.195 8 N -0.499 5.499 9 Si 0.799 3.201 10 H -0.196 1.196 11 H -0.197 1.197 12 H -0.208 1.208 13 C 0.223 3.777 14 O -0.522 6.522 15 C -0.105 4.105 16 C -0.100 4.100 17 C -0.172 4.172 18 C -0.346 4.346 19 S 0.369 5.631 20 C -0.356 4.356 21 H 0.065 0.935 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.157 0.843 32 H 0.207 0.793 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.445 0.281 -12.161 12.407 hybrid contribution -0.322 -0.405 2.231 2.290 sum -2.768 -0.124 -9.929 10.309 Atomic orbital electron populations 1.21522 0.94230 1.01428 1.01438 1.21757 0.96552 0.96756 1.00695 1.21607 0.78859 0.98042 1.01169 1.44044 1.06603 1.61438 1.05173 1.19492 0.93263 1.50945 0.84257 0.91515 1.25744 0.96996 0.96403 1.00360 1.70195 1.16827 1.35497 1.27348 0.85259 0.78138 0.79037 0.77712 1.19595 1.19742 1.20845 1.20732 0.87833 0.82979 0.86107 1.90475 1.16219 1.57838 1.87710 1.20285 0.96493 1.04917 0.88839 1.18633 1.00776 0.93265 0.97359 1.20202 1.00061 0.98703 0.98239 1.25826 1.04928 1.00522 1.03372 1.83723 1.45078 1.00198 1.34093 1.25565 1.04493 1.02900 1.02635 0.93496 0.91889 0.92504 0.94304 0.91942 0.90083 0.91976 0.91728 0.87668 0.87783 0.84262 0.79295 0.81588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 9.91 71.98 0.71 -3.18 16 2 C -0.12 -4.65 5.67 30.59 0.17 -4.47 16 3 C 0.13 5.37 4.35 86.38 0.38 5.75 16 4 N -0.45 -23.30 2.64 -635.54 -1.68 -24.98 16 5 C -0.35 -20.08 9.42 84.04 0.79 -19.29 16 6 H 0.07 4.20 7.31 -2.91 -0.02 4.18 16 7 C 0.01 0.44 4.88 84.93 0.41 0.86 16 8 N -0.86 -42.99 8.70 21.66 0.19 -42.80 16 9 Si 0.97 42.14 29.62 68.60 2.03 44.17 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 11 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 C 0.43 21.54 7.57 87.66 0.66 22.20 16 14 O -0.63 -37.06 15.63 -3.05 -0.05 -37.11 16 15 C -0.06 -2.32 4.56 29.10 0.13 -2.19 16 16 C -0.09 -3.09 4.29 -20.92 -0.09 -3.18 16 17 C -0.14 -4.57 9.98 21.22 0.21 -4.36 16 18 C -0.21 -5.71 11.23 66.72 0.75 -4.96 16 19 S 0.11 2.82 23.34 -56.49 -1.32 1.50 16 20 C -0.22 -7.08 10.98 66.72 0.73 -6.35 16 21 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.04 1.43 6.44 -2.39 -0.02 1.41 16 25 H 0.06 2.93 6.40 -2.39 -0.02 2.91 16 26 H 0.08 3.78 5.83 -2.39 -0.01 3.77 16 27 H 0.06 2.23 6.71 -2.39 -0.02 2.22 16 28 H 0.27 12.78 8.31 -92.71 -0.77 12.01 16 29 H 0.11 3.33 7.40 -2.39 -0.02 3.32 16 30 H 0.10 3.46 6.39 -2.38 -0.02 3.44 16 31 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 32 H 0.19 3.79 8.06 -2.91 -0.02 3.76 16 33 H 0.17 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -65.99 287.48 5.15 -60.84 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 1.11 Total: 17.56 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 4.87 Total: -19.17 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: -1.49 Total: -67.78 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -0.05 Total: -37.11 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -1.32 Total: 1.50 kcal Total: -65.99 5.15 -60.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044379510.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.252 kcal (2) G-P(sol) polarization free energy of solvation -65.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds