Wall clock time and date at job start Sun Mar 29 2020 23:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00128 * 2 1 4 4 H 1.48498 * 109.47118 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46904 * 300.00078 * 3 2 1 6 6 H 1.48499 * 109.47134 * 59.99901 * 3 2 1 7 7 C 1.37877 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00155 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47011 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99588 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00434 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99575 * 180.02562 * 11 10 9 14 14 C 1.52996 * 109.47094 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47210 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.47116 * 179.97438 * 15 14 13 17 17 C 1.33391 * 125.19937 * 90.00083 * 16 15 14 18 18 C 1.38423 * 114.92045 * 179.97438 * 17 16 15 19 19 C 1.33390 * 114.91979 * 359.97438 * 18 17 16 20 20 S 1.75878 * 125.20693 * 269.69344 * 16 15 14 21 21 H 0.97000 * 119.99667 * 359.97438 * 1 2 3 22 22 H 1.09008 * 109.47053 * 60.00445 * 9 7 2 23 23 H 1.09003 * 109.47752 * 300.00207 * 9 7 2 24 24 H 0.96992 * 119.99723 * 0.02562 * 10 9 7 25 25 H 1.08997 * 109.47561 * 59.99923 * 13 11 10 26 26 H 1.09000 * 109.46976 * 299.99617 * 13 11 10 27 27 H 1.09000 * 109.47531 * 59.99538 * 14 13 11 28 28 H 1.09008 * 109.47250 * 300.00113 * 14 13 11 29 29 H 1.09000 * 109.46884 * 60.00289 * 15 14 13 30 30 H 1.09000 * 109.46955 * 299.99604 * 15 14 13 31 31 H 1.07995 * 122.54106 * 359.95411 * 17 16 15 32 32 H 1.08001 * 122.53959 * 180.02562 * 18 17 16 33 33 H 1.07998 * 125.20163 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7537 -4.8833 -0.0011 12 8 0.5613 -5.1050 -0.0011 13 6 2.7331 -6.0288 -0.0005 14 6 1.9681 -7.3538 -0.0019 15 6 2.9623 -8.5167 -0.0019 16 6 2.2087 -9.8219 -0.0027 17 6 1.8247 -10.4873 -1.0931 18 6 1.1441 -11.6672 -0.8468 19 6 0.9759 -11.9602 0.4436 20 16 1.7079 -10.7044 1.4338 21 1 -0.4849 0.8401 0.0004 22 1 0.6241 -2.5567 -0.8904 23 1 0.6247 -2.5571 0.8896 24 1 3.1567 -3.4354 -0.0002 25 1 3.3591 -5.9712 0.8899 26 1 3.3603 -5.9709 -0.8900 27 1 1.3423 -7.4112 -0.8925 28 1 1.3404 -7.4119 0.8874 29 1 3.5883 -8.4596 0.8886 30 1 3.5895 -8.4584 -0.8915 31 1 2.0290 -10.1323 -2.0924 32 1 0.7778 -12.3029 -1.6393 33 1 0.4709 -12.8365 0.8224 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048521428.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:01 Heat of formation + Delta-G solvation = -52.096312 kcal Electronic energy + Delta-G solvation = -15242.693055 eV Core-core repulsion = 12586.187705 eV Total energy + Delta-G solvation = -2656.505350 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.54542 -38.84854 -36.25726 -35.56842 -34.33835 -31.53471 -29.41633 -27.50195 -25.10426 -24.01489 -22.49530 -21.21670 -20.11382 -18.97600 -18.01376 -17.28206 -17.02299 -16.81282 -16.33027 -15.93953 -15.34825 -14.68317 -14.43552 -14.11789 -14.04119 -13.69194 -13.47033 -13.30188 -12.96671 -12.76167 -12.63606 -12.43728 -12.31411 -12.21023 -11.73009 -11.48793 -11.45789 -10.82063 -10.73451 -9.81202 -9.51659 -9.37596 -8.29763 -6.46566 0.11785 0.76369 1.13680 1.43130 1.44390 1.57990 1.81778 1.87585 2.33310 2.65419 3.05175 3.76871 3.93863 4.07159 4.24866 4.30931 4.48683 4.62539 4.73494 4.76087 4.77717 4.92371 5.12163 5.13805 5.23558 5.30906 5.38357 5.43785 5.50415 5.64738 5.71487 5.85204 6.65584 6.94323 7.23419 7.54230 8.82845 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.065352 B = 0.003011 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.347746 B = 9295.989826 C = 9383.336803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.986 3.014 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.264 3.736 10 N -0.710 5.710 11 C 0.488 3.512 12 O -0.610 6.610 13 C -0.124 4.124 14 C -0.092 4.092 15 C -0.042 4.042 16 C -0.180 4.180 17 C -0.154 4.154 18 C -0.142 4.142 19 C -0.222 4.222 20 S 0.069 5.931 21 H 0.268 0.732 22 H -0.015 1.015 23 H -0.016 1.016 24 H 0.410 0.590 25 H 0.121 0.879 26 H 0.124 0.876 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.151 0.849 32 H 0.158 0.842 33 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.137 -21.460 -0.301 23.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.103 0.897 9 C 0.141 3.859 10 N -0.359 5.359 11 C 0.277 3.723 12 O -0.492 6.492 13 C -0.164 4.164 14 C -0.131 4.131 15 C -0.081 4.081 16 C -0.297 4.297 17 C -0.184 4.184 18 C -0.173 4.173 19 C -0.357 4.357 20 S 0.332 5.668 21 H 0.077 0.923 22 H 0.003 0.997 23 H 0.002 0.998 24 H 0.246 0.754 25 H 0.139 0.861 26 H 0.142 0.858 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.124 0.876 31 H 0.169 0.831 32 H 0.176 0.824 33 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 9.296 -21.278 1.258 23.254 hybrid contribution -0.316 0.778 -1.420 1.649 sum 8.980 -20.500 -0.161 22.381 Atomic orbital electron populations 1.70154 1.08360 1.28504 1.50122 1.26111 0.95792 1.04057 0.93875 0.85087 0.79135 0.77183 0.77656 1.17464 1.20468 1.20491 1.21667 0.94363 0.90543 1.52665 0.89652 1.18531 0.88850 0.84695 0.93853 1.46245 1.11170 1.05680 1.72850 1.21779 0.90082 0.85296 0.75181 1.90638 1.20022 1.85706 1.52878 1.21693 0.97245 0.90371 1.07051 1.21237 0.97533 0.92209 1.02088 1.20195 0.96024 0.86780 1.05098 1.24751 1.07232 1.02145 0.95576 1.20450 1.01764 0.96161 0.99991 1.20475 1.01484 0.98231 0.97073 1.25898 1.08706 1.04371 0.96755 1.84375 1.54742 1.16813 1.10847 0.92268 0.99712 0.99785 0.75418 0.86132 0.85774 0.92856 0.93495 0.89228 0.87593 0.83106 0.82409 0.80053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.87 13.29 21.45 0.28 -56.58 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.99 42.37 29.54 68.60 2.03 44.40 16 4 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 6 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.55 -30.33 9.28 25.60 0.24 -30.09 16 8 H 0.09 4.19 7.60 -2.91 -0.02 4.17 16 9 C 0.26 14.70 5.43 85.63 0.46 15.16 16 10 N -0.71 -29.89 5.55 -466.76 -2.59 -32.47 16 11 C 0.49 19.36 7.83 87.66 0.69 20.05 16 12 O -0.61 -30.87 15.98 -3.03 -0.05 -30.92 16 13 C -0.12 -2.99 5.70 29.85 0.17 -2.82 16 14 C -0.09 -2.29 4.49 30.59 0.14 -2.16 16 15 C -0.04 -0.74 5.71 29.85 0.17 -0.57 16 16 C -0.18 -3.66 5.76 24.59 0.14 -3.52 16 17 C -0.15 -2.95 10.05 21.22 0.21 -2.73 16 18 C -0.14 -2.48 10.18 21.22 0.22 -2.27 16 19 C -0.22 -3.87 11.23 66.72 0.75 -3.12 16 20 S 0.07 1.38 23.33 -56.49 -1.32 0.07 16 21 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 22 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 23 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 24 H 0.41 13.88 8.32 -92.71 -0.77 13.11 16 25 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.05 1.53 8.10 -2.39 -0.02 1.51 16 28 H 0.05 1.39 8.10 -2.38 -0.02 1.37 16 29 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -74.46 303.56 2.33 -72.13 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.33 Total: 14.93 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 3.65 Total: -11.55 kcal Atomic # 7 Polarization: -86.75 SS G_CDS: -2.30 Total: -89.06 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.05 Total: -30.92 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -1.32 Total: 0.07 kcal Total: -74.46 2.33 -72.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048521428.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.034 kcal (2) G-P(sol) polarization free energy of solvation -74.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds