Wall clock time and date at job start Sun Mar 29 2020 23:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33397 * 125.20328 * 2 1 4 4 C 1.38427 * 114.91859 * 180.02562 * 3 2 1 5 5 C 1.50700 * 122.53608 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.46880 * 145.02602 * 5 4 3 7 7 C 1.52992 * 109.47442 * 265.02478 * 5 4 3 8 8 N 1.46501 * 109.47032 * 25.02829 * 5 4 3 9 9 C 1.34779 * 120.00164 * 154.99563 * 8 5 4 10 10 O 1.21688 * 119.99824 * 0.02562 * 9 8 5 11 11 C 1.46371 * 120.00201 * 179.97438 * 9 8 5 12 12 H 1.08002 * 119.99914 * 353.66899 * 11 9 8 13 13 C 1.40045 * 120.00228 * 173.93697 * 11 9 8 14 14 N 1.30681 * 119.99689 * 6.15839 * 13 11 9 15 15 Si 1.86796 * 120.00384 * 186.15291 * 13 11 9 16 16 H 1.48502 * 109.47042 * 94.98532 * 15 13 11 17 17 H 1.48498 * 109.47314 * 214.98742 * 15 13 11 18 18 H 1.48499 * 109.47098 * 334.98560 * 15 13 11 19 19 C 1.33390 * 114.92307 * 0.24562 * 4 3 2 20 20 C 1.50694 * 125.20203 * 179.75734 * 19 4 3 21 21 S 1.75885 * 125.20229 * 180.02562 * 2 1 3 22 22 H 1.09005 * 109.47277 * 90.00132 * 1 2 3 23 23 H 1.08995 * 109.47440 * 210.00204 * 1 2 3 24 24 H 1.09000 * 109.47336 * 330.00674 * 1 2 3 25 25 H 1.08000 * 122.53629 * 0.04883 * 3 2 1 26 26 H 1.09004 * 109.46982 * 60.00186 * 7 5 4 27 27 H 1.09001 * 109.47238 * 180.02562 * 7 5 4 28 28 H 1.08998 * 109.47119 * 300.00449 * 7 5 4 29 29 H 0.97003 * 119.99755 * 334.99460 * 8 5 4 30 30 H 0.97000 * 119.99932 * 180.02562 * 14 13 11 31 31 H 1.09001 * 109.47526 * 90.00198 * 20 19 4 32 32 H 1.09004 * 109.47194 * 210.00263 * 20 19 4 33 33 H 1.08998 * 109.47337 * 329.99762 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6380 0.8429 -0.0006 5 6 4.6623 1.9482 -0.0012 6 1 5.5272 1.6424 0.5875 7 6 5.1001 2.2370 -1.4384 8 7 4.0765 3.1572 0.5832 9 6 4.8725 4.0859 1.1493 10 8 6.0778 3.9203 1.1747 11 6 4.2872 5.2940 1.7327 12 1 3.2313 5.4911 1.6201 13 6 5.0974 6.1972 2.4321 14 7 6.3925 6.0253 2.4619 15 14 4.3269 7.6474 3.3222 16 1 4.1035 7.2920 4.7467 17 1 5.2368 8.8182 3.2410 18 1 3.0280 7.9850 2.6867 19 6 3.9751 -0.4477 -0.0062 20 6 5.3860 -0.9770 -0.0132 21 16 2.5209 -1.4372 -0.0006 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 1.8668 2.0895 0.0008 26 1 4.2352 2.5429 -2.0272 27 1 5.8413 3.0362 -1.4388 28 1 5.5359 1.3375 -1.8732 29 1 3.1157 3.2892 0.5626 30 1 6.9537 6.6507 2.9466 31 1 5.7300 -1.1082 1.0127 32 1 5.4117 -1.9362 -0.5305 33 1 6.0369 -0.2697 -0.5271 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049511639.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:35 Heat of formation + Delta-G solvation = -22.842929 kcal Electronic energy + Delta-G solvation = -16331.719108 eV Core-core repulsion = 13676.482280 eV Total energy + Delta-G solvation = -2655.236828 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.01407 -36.85781 -33.94503 -32.71252 -32.16033 -29.35976 -29.23904 -26.08189 -24.76605 -23.25311 -21.00905 -19.68197 -17.93018 -17.14831 -16.75944 -15.40661 -14.83292 -14.34346 -14.22562 -13.75455 -13.34086 -13.18551 -13.07570 -12.89607 -12.66902 -12.29223 -11.97577 -11.70508 -11.63122 -11.37385 -11.14435 -10.96069 -10.90730 -10.70880 -10.44982 -10.21004 -10.15111 -8.83803 -8.25799 -8.08750 -7.58505 -7.48545 -6.17751 -4.61619 1.16015 1.75925 2.12090 2.93009 3.14923 3.22119 3.25476 4.12323 4.60503 4.86145 4.94248 5.07617 5.25583 5.38383 5.48308 5.55058 5.67913 5.75778 5.80020 5.86485 5.95669 6.08473 6.14429 6.22547 6.38257 6.45344 6.68351 6.80532 6.89667 7.45402 7.95375 8.13741 8.35990 9.04526 9.56009 10.61752 10.80571 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.028987 B = 0.005542 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.730056 B = 5051.433626 C = 5682.693335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.185 4.185 3 C -0.120 4.120 4 C -0.093 4.093 5 C 0.209 3.791 6 H 0.085 0.915 7 C -0.151 4.151 8 N -0.760 5.760 9 C 0.557 3.443 10 O -0.580 6.580 11 C -0.546 4.546 12 H 0.067 0.933 13 C 0.088 3.912 14 N -0.768 5.768 15 Si 0.906 3.094 16 H -0.273 1.273 17 H -0.279 1.279 18 H -0.265 1.265 19 C -0.177 4.177 20 C -0.083 4.083 21 S 0.068 5.932 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.076 0.924 25 H 0.140 0.860 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.379 0.621 30 H 0.268 0.732 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.934 -12.109 -5.183 15.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.302 4.302 3 C -0.150 4.150 4 C -0.105 4.105 5 C 0.101 3.899 6 H 0.103 0.897 7 C -0.210 4.210 8 N -0.415 5.415 9 C 0.361 3.639 10 O -0.463 6.463 11 C -0.583 4.583 12 H 0.085 0.915 13 C -0.131 4.131 14 N -0.396 5.396 15 Si 0.731 3.269 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.189 1.189 19 C -0.294 4.294 20 C -0.142 4.142 21 S 0.332 5.668 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.095 0.905 25 H 0.157 0.843 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.211 0.789 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.143 -13.733 -5.095 16.759 hybrid contribution -0.651 2.271 0.455 2.406 sum -8.794 -11.461 -4.640 15.173 Atomic orbital electron populations 1.20291 0.88058 1.02961 1.02408 1.24277 0.99542 0.95389 1.10955 1.19908 0.92496 0.99253 1.03359 1.19150 0.94960 0.94286 1.02139 1.19097 0.93253 0.83476 0.94105 0.89740 1.22138 1.01325 1.01285 0.96290 1.46260 1.09449 1.20842 1.64994 1.18204 0.85901 0.82633 0.77170 1.90589 1.14774 1.79189 1.61778 1.20876 0.95618 1.05177 1.36650 0.91497 1.25689 0.94352 0.98000 0.95071 1.70031 1.04232 1.33187 1.32199 0.86383 0.79708 0.80764 0.80038 1.19834 1.20471 1.18919 1.24092 0.98661 0.95499 1.11185 1.20357 0.90032 1.00899 1.02863 1.83913 0.97127 1.10160 1.75605 0.91052 0.91656 0.90513 0.84287 0.93260 0.91475 0.93209 0.78865 0.92168 0.90745 0.91696 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.38 36.00 0.37 -0.41 16 2 C -0.18 -2.47 6.51 -36.00 -0.23 -2.70 16 3 C -0.12 -1.84 9.22 -41.20 -0.38 -2.22 16 4 C -0.09 -1.57 4.96 -106.25 -0.53 -2.09 16 5 C 0.21 4.15 2.24 -69.09 -0.16 3.99 16 6 H 0.08 1.88 6.96 -51.93 -0.36 1.51 16 7 C -0.15 -2.76 9.41 37.15 0.35 -2.41 16 8 N -0.76 -17.24 5.01 -56.35 -0.28 -17.52 16 9 C 0.56 15.86 7.71 -12.99 -0.10 15.76 16 10 O -0.58 -18.66 14.71 5.20 0.08 -18.58 16 11 C -0.55 -15.50 9.53 -35.63 -0.34 -15.84 16 12 H 0.07 1.75 7.86 -52.49 -0.41 1.33 16 13 C 0.09 2.48 5.49 -17.36 -0.10 2.39 16 14 N -0.77 -23.08 11.85 55.55 0.66 -22.43 16 15 Si 0.91 20.24 29.56 -169.99 -5.03 15.21 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 19 C -0.18 -2.65 6.51 -36.01 -0.23 -2.89 16 20 C -0.08 -1.06 9.79 36.00 0.35 -0.71 16 21 S 0.07 0.88 23.31 -107.50 -2.51 -1.63 16 22 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.14 2.04 6.52 -52.49 -0.34 1.70 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.05 0.77 7.26 -51.93 -0.38 0.40 16 29 H 0.38 7.67 6.52 -40.82 -0.27 7.40 16 30 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 1.07 6.49 -51.93 -0.34 0.73 16 LS Contribution 294.41 15.07 4.44 4.44 Total: -1.00 -33.56 294.41 -7.82 -41.38 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -4.19 Total: 6.25 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -0.99 Total: -7.13 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.38 Total: -39.95 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.08 Total: -18.58 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.21 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.51 Total: -1.63 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.56 -7.82 -41.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049511639.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.540 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds