Wall clock time and date at job start Sun Mar 29 2020 23:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33397 * 125.20328 * 2 1 4 4 C 1.38427 * 114.91859 * 180.02562 * 3 2 1 5 5 C 1.50700 * 122.53608 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.46880 * 145.02602 * 5 4 3 7 7 C 1.52992 * 109.47442 * 265.02478 * 5 4 3 8 8 N 1.46501 * 109.47032 * 25.02829 * 5 4 3 9 9 C 1.34779 * 120.00164 * 154.99563 * 8 5 4 10 10 O 1.21688 * 119.99824 * 0.02562 * 9 8 5 11 11 C 1.46371 * 120.00201 * 179.97438 * 9 8 5 12 12 H 1.08002 * 119.99914 * 353.66899 * 11 9 8 13 13 C 1.40045 * 120.00228 * 173.93697 * 11 9 8 14 14 N 1.30681 * 119.99689 * 6.15839 * 13 11 9 15 15 Si 1.86796 * 120.00384 * 186.15291 * 13 11 9 16 16 H 1.48502 * 109.47042 * 94.98532 * 15 13 11 17 17 H 1.48498 * 109.47314 * 214.98742 * 15 13 11 18 18 H 1.48499 * 109.47098 * 334.98560 * 15 13 11 19 19 C 1.33390 * 114.92307 * 0.24562 * 4 3 2 20 20 C 1.50694 * 125.20203 * 179.75734 * 19 4 3 21 21 S 1.75885 * 125.20229 * 180.02562 * 2 1 3 22 22 H 1.09005 * 109.47277 * 90.00132 * 1 2 3 23 23 H 1.08995 * 109.47440 * 210.00204 * 1 2 3 24 24 H 1.09000 * 109.47336 * 330.00674 * 1 2 3 25 25 H 1.08000 * 122.53629 * 0.04883 * 3 2 1 26 26 H 1.09004 * 109.46982 * 60.00186 * 7 5 4 27 27 H 1.09001 * 109.47238 * 180.02562 * 7 5 4 28 28 H 1.08998 * 109.47119 * 300.00449 * 7 5 4 29 29 H 0.97003 * 119.99755 * 334.99460 * 8 5 4 30 30 H 0.97000 * 119.99932 * 180.02562 * 14 13 11 31 31 H 1.09001 * 109.47526 * 90.00198 * 20 19 4 32 32 H 1.09004 * 109.47194 * 210.00263 * 20 19 4 33 33 H 1.08998 * 109.47337 * 329.99762 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6380 0.8429 -0.0006 5 6 4.6623 1.9482 -0.0012 6 1 5.5272 1.6424 0.5875 7 6 5.1001 2.2370 -1.4384 8 7 4.0765 3.1572 0.5832 9 6 4.8725 4.0859 1.1493 10 8 6.0778 3.9203 1.1747 11 6 4.2872 5.2940 1.7327 12 1 3.2313 5.4911 1.6201 13 6 5.0974 6.1972 2.4321 14 7 6.3925 6.0253 2.4619 15 14 4.3269 7.6474 3.3222 16 1 4.1035 7.2920 4.7467 17 1 5.2368 8.8182 3.2410 18 1 3.0280 7.9850 2.6867 19 6 3.9751 -0.4477 -0.0062 20 6 5.3860 -0.9770 -0.0132 21 16 2.5209 -1.4372 -0.0006 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 1.8668 2.0895 0.0008 26 1 4.2352 2.5429 -2.0272 27 1 5.8413 3.0362 -1.4388 28 1 5.5359 1.3375 -1.8732 29 1 3.1157 3.2892 0.5626 30 1 6.9537 6.6507 2.9466 31 1 5.7300 -1.1082 1.0127 32 1 5.4117 -1.9362 -0.5305 33 1 6.0369 -0.2697 -0.5271 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049511639.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:34 Heat of formation + Delta-G solvation = -45.003072 kcal Electronic energy + Delta-G solvation = -16332.680044 eV Core-core repulsion = 13676.482280 eV Total energy + Delta-G solvation = -2656.197764 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.46299 -38.74071 -35.52894 -34.53023 -33.83666 -31.07267 -30.23785 -28.17718 -25.93094 -24.63623 -22.37660 -21.58063 -19.48880 -18.83482 -17.97313 -17.45917 -16.36519 -16.01160 -15.48851 -15.27597 -14.84243 -14.53364 -14.36287 -14.13507 -13.84865 -13.79019 -13.49060 -13.25243 -12.95321 -12.87140 -12.74894 -12.59936 -12.37309 -12.20631 -12.01717 -11.95257 -11.51913 -10.92994 -9.84593 -9.53412 -9.32328 -9.15815 -8.29251 -6.84375 0.03776 0.68026 1.00002 1.39958 1.41236 1.56966 1.71892 2.25154 2.48525 3.14182 3.62439 3.82638 3.91500 4.16799 4.38850 4.39540 4.50316 4.53152 4.66564 4.74699 4.77470 4.79721 4.94794 5.06590 5.12503 5.25609 5.29042 5.32706 5.47644 5.57034 5.89304 6.23897 6.32189 6.87552 7.55489 8.50377 8.68216 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.028987 B = 0.005542 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.730056 B = 5051.433626 C = 5682.693335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.178 4.178 3 C -0.147 4.147 4 C -0.114 4.114 5 C 0.212 3.788 6 H 0.051 0.949 7 C -0.141 4.141 8 N -0.748 5.748 9 C 0.541 3.459 10 O -0.629 6.629 11 C -0.575 4.575 12 H 0.085 0.915 13 C 0.030 3.970 14 N -0.821 5.821 15 Si 0.997 3.003 16 H -0.264 1.264 17 H -0.272 1.272 18 H -0.248 1.248 19 C -0.190 4.190 20 C -0.085 4.085 21 S 0.119 5.881 22 H 0.088 0.912 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.139 0.861 26 H 0.061 0.939 27 H 0.031 0.969 28 H 0.076 0.924 29 H 0.391 0.609 30 H 0.274 0.726 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.539 -12.829 -5.174 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.296 4.296 3 C -0.177 4.177 4 C -0.126 4.126 5 C 0.104 3.896 6 H 0.070 0.930 7 C -0.200 4.200 8 N -0.403 5.403 9 C 0.345 3.655 10 O -0.516 6.516 11 C -0.612 4.612 12 H 0.104 0.896 13 C -0.185 4.185 14 N -0.451 5.451 15 Si 0.816 3.184 16 H -0.189 1.189 17 H -0.197 1.197 18 H -0.171 1.171 19 C -0.307 4.307 20 C -0.144 4.144 21 S 0.384 5.616 22 H 0.107 0.893 23 H 0.099 0.901 24 H 0.101 0.899 25 H 0.156 0.844 26 H 0.080 0.920 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.226 0.774 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.797 -14.491 -5.117 18.782 hybrid contribution 0.128 2.344 0.407 2.382 sum -10.670 -12.148 -4.709 16.840 Atomic orbital electron populations 1.20444 0.85516 1.04082 1.03836 1.24750 1.01300 0.95008 1.08499 1.19899 0.92047 1.00076 1.05688 1.18903 0.94873 0.93857 1.04987 1.19050 0.93236 0.83377 0.93961 0.93046 1.22017 1.00865 1.01314 0.95816 1.45950 1.09686 1.20833 1.63818 1.18570 0.85699 0.83848 0.77353 1.90542 1.16866 1.80452 1.63782 1.21414 0.96746 1.05752 1.37252 0.89649 1.26953 0.94660 1.01462 0.95447 1.70195 1.06425 1.35040 1.33409 0.85019 0.79079 0.75818 0.78442 1.18863 1.19681 1.17138 1.24413 1.00621 0.95617 1.10059 1.20426 0.88930 1.01910 1.03107 1.83731 0.94997 1.08686 1.74210 0.89345 0.90092 0.89856 0.84383 0.92032 0.95015 0.90470 0.77381 0.91593 0.90822 0.89019 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 10.38 71.23 0.74 -0.59 16 2 C -0.18 -4.32 6.51 24.59 0.16 -4.16 16 3 C -0.15 -4.36 9.22 21.22 0.20 -4.17 16 4 C -0.11 -3.80 4.96 -20.92 -0.10 -3.91 16 5 C 0.21 8.70 2.24 44.24 0.10 8.80 16 6 H 0.05 2.44 6.96 -2.39 -0.02 2.42 16 7 C -0.14 -5.30 9.41 71.98 0.68 -4.62 16 8 N -0.75 -35.09 5.01 -450.40 -2.26 -37.35 16 9 C 0.54 32.09 7.71 86.36 0.67 32.76 16 10 O -0.63 -42.73 14.71 -4.31 -0.06 -42.79 16 11 C -0.58 -33.19 9.53 24.83 0.24 -32.96 16 12 H 0.09 4.43 7.86 -2.91 -0.02 4.41 16 13 C 0.03 1.69 5.49 85.30 0.47 2.16 16 14 N -0.82 -50.91 11.85 21.84 0.26 -50.65 16 15 Si 1.00 41.46 29.56 68.60 2.03 43.48 16 16 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 17 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 18 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 19 C -0.19 -5.46 6.51 24.59 0.16 -5.30 16 20 C -0.09 -2.12 9.79 71.23 0.70 -1.43 16 21 S 0.12 2.76 23.31 -56.49 -1.32 1.44 16 22 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 23 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.14 3.97 6.52 -2.91 -0.02 3.95 16 26 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 27 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.08 2.42 7.26 -2.39 -0.02 2.40 16 29 H 0.39 16.13 6.52 -92.71 -0.60 15.53 16 30 H 0.27 15.36 8.29 -92.71 -0.77 14.59 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 1.90 6.49 -2.39 -0.02 1.89 16 Total: -1.00 -75.51 294.41 3.16 -72.34 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.52 Total: 26.95 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 4.00 Total: -13.42 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -2.00 Total: -88.00 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -0.06 Total: -42.79 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -1.32 Total: 1.44 kcal Total: -75.51 3.16 -72.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049511639.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.339 kcal (2) G-P(sol) polarization free energy of solvation -75.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds