Wall clock time and date at job start Sun Mar 29 2020 23:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.47094 * 2 1 4 4 C 1.33814 * 124.52152 * 89.97917 * 3 2 1 5 5 C 1.37477 * 115.09811 * 180.02562 * 4 3 2 6 6 C 1.36641 * 113.29948 * 0.02562 * 5 4 3 7 7 C 1.46585 * 125.45971 * 180.02562 * 6 5 4 8 8 O 1.21702 * 119.99829 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99848 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99807 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47167 * 324.99524 * 10 9 7 12 12 C 1.53005 * 109.47346 * 84.99820 * 10 9 7 13 13 C 1.50696 * 109.47341 * 204.99710 * 10 9 7 14 14 H 1.08005 * 120.00157 * 0.02562 * 13 10 9 15 15 C 1.37874 * 120.00258 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00303 * 0.02562 * 15 13 10 17 17 Si 1.86807 * 119.99948 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.46998 * 90.00102 * 17 15 13 19 19 H 1.48502 * 109.46994 * 209.99666 * 17 15 13 20 20 H 1.48490 * 109.47330 * 330.00132 * 17 15 13 21 21 S 1.70620 * 124.52019 * 270.02284 * 3 2 1 22 22 H 1.09000 * 109.46909 * 60.00128 * 1 2 3 23 23 H 1.09003 * 109.46795 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47322 * 300.00124 * 1 2 3 25 25 H 1.08996 * 109.47322 * 239.99876 * 2 1 3 26 26 H 1.09000 * 109.46909 * 119.99872 * 2 1 3 27 27 H 1.08001 * 122.45277 * 0.03913 * 4 3 2 28 28 H 1.08006 * 123.34712 * 180.02562 * 5 4 3 29 29 H 0.96996 * 120.00545 * 359.97438 * 9 7 6 30 30 H 1.08997 * 109.46807 * 59.99873 * 12 10 9 31 31 H 1.09000 * 109.46956 * 180.02562 * 12 10 9 32 32 H 1.09001 * 109.46687 * 300.00073 * 12 10 9 33 33 H 0.96995 * 120.00275 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2848 2.1359 1.1025 5 6 2.7364 3.4148 0.8774 6 6 2.8451 3.7239 -0.4491 7 6 3.2994 5.0090 -0.9883 8 8 3.6173 5.9080 -0.2321 9 7 3.3642 5.1953 -2.3216 10 6 3.8187 6.4795 -2.8605 11 1 3.4799 7.2866 -2.2108 12 6 5.3470 6.4902 -2.9325 13 6 3.2495 6.6743 -4.2421 14 1 2.6123 5.9174 -4.6754 15 6 3.5410 7.8193 -4.9528 16 7 4.3164 8.7412 -4.4252 17 14 2.8347 8.0610 -6.6652 18 1 1.5248 8.7536 -6.5671 19 1 3.7698 8.8829 -7.4748 20 1 2.6482 6.7389 -7.3149 21 16 2.3541 2.3326 -1.4058 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.1442 1.7376 2.0965 28 1 2.9809 4.1062 1.6703 29 1 3.1105 4.4790 -2.9243 30 1 5.6858 5.6832 -3.5821 31 1 5.6852 7.4459 -3.3330 32 1 5.7588 6.3493 -1.9331 33 1 4.5212 9.5468 -4.9250 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336080.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:36:06 Heat of formation + Delta-G solvation = -42.983437 kcal Electronic energy + Delta-G solvation = -15926.714296 eV Core-core repulsion = 13270.604110 eV Total energy + Delta-G solvation = -2656.110186 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.70608 -38.87716 -36.75860 -34.66946 -34.34507 -31.36624 -29.34320 -27.38454 -26.21134 -23.64651 -23.12712 -21.70436 -20.51200 -19.09137 -18.11846 -17.28642 -16.82309 -16.40963 -15.99976 -15.58033 -15.06316 -14.83868 -14.47248 -14.40356 -13.79855 -13.74657 -13.31232 -12.99468 -12.97010 -12.83070 -12.70030 -12.38417 -12.30267 -12.13730 -12.03961 -11.65117 -11.16551 -11.03475 -10.62842 -9.99055 -9.59612 -9.50928 -8.19793 -6.38218 -0.47158 0.47581 0.94228 1.43669 1.45091 1.45867 1.56800 2.25176 2.30899 2.53344 3.10689 3.73649 3.94914 4.17975 4.36639 4.43975 4.51361 4.69454 4.83362 4.87137 4.94390 5.02925 5.07221 5.16245 5.22884 5.36712 5.38732 5.46387 5.52408 5.62177 5.83629 6.04089 6.66723 6.80145 7.24019 7.39538 8.86995 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.032735 B = 0.005016 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.136423 B = 5581.147798 C = 6194.972807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C -0.182 4.182 4 C -0.159 4.159 5 C -0.057 4.057 6 C -0.300 4.300 7 C 0.571 3.429 8 O -0.593 6.593 9 N -0.700 5.700 10 C 0.269 3.731 11 H 0.002 0.998 12 C -0.134 4.134 13 C -0.551 4.551 14 H 0.073 0.927 15 C 0.016 3.984 16 N -0.917 5.917 17 Si 0.976 3.024 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.259 1.259 21 S 0.222 5.778 22 H 0.049 0.951 23 H 0.081 0.919 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.104 0.896 27 H 0.171 0.829 28 H 0.144 0.856 29 H 0.399 0.601 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.011 0.989 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.482 -19.675 6.155 21.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.302 4.302 4 C -0.188 4.188 5 C -0.091 4.091 6 C -0.420 4.420 7 C 0.359 3.641 8 O -0.477 6.477 9 N -0.348 5.348 10 C 0.166 3.834 11 H 0.020 0.980 12 C -0.193 4.193 13 C -0.589 4.589 14 H 0.091 0.909 15 C -0.184 4.184 16 N -0.555 5.555 17 Si 0.800 3.200 18 H -0.203 1.203 19 H -0.207 1.207 20 H -0.183 1.183 21 S 0.491 5.509 22 H 0.068 0.932 23 H 0.100 0.900 24 H 0.076 0.924 25 H 0.105 0.895 26 H 0.122 0.878 27 H 0.189 0.811 28 H 0.162 0.838 29 H 0.234 0.766 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.030 0.970 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.265 -19.137 5.031 20.755 hybrid contribution 0.006 0.948 0.680 1.166 sum -6.259 -18.189 5.710 20.066 Atomic orbital electron populations 1.21818 0.93489 1.03165 1.02186 1.20318 0.96702 0.87328 1.05005 1.24755 1.05370 1.03125 0.96933 1.20092 1.04835 0.92835 1.01059 1.20946 0.96309 0.97375 0.94467 1.24567 1.18503 0.99489 0.99439 1.17601 0.77423 0.86407 0.82718 1.90732 1.52828 1.44954 1.59147 1.46214 1.65536 1.17587 1.05467 1.18457 0.91779 0.80001 0.93137 0.98025 1.21910 0.97772 1.02319 0.97273 1.21496 1.31475 1.05676 1.00206 0.90933 1.25818 0.94961 0.94995 1.02630 1.70047 1.36769 1.09159 1.39482 0.85291 0.77867 0.78662 0.78204 1.20269 1.20705 1.18291 1.82882 1.59334 1.00899 1.07806 0.93215 0.90023 0.92394 0.89527 0.87804 0.81121 0.83809 0.76575 0.93943 0.90995 0.96964 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.90 71.98 0.71 -1.00 16 2 C -0.05 -0.68 6.37 29.85 0.19 -0.49 16 3 C -0.18 -3.60 5.53 24.68 0.14 -3.47 16 4 C -0.16 -3.41 10.00 21.08 0.21 -3.20 16 5 C -0.06 -1.68 10.01 21.72 0.22 -1.46 16 6 C -0.30 -10.36 6.45 24.08 0.16 -10.21 16 7 C 0.57 25.88 7.75 86.42 0.67 26.55 16 8 O -0.59 -31.82 16.50 -4.36 -0.07 -31.90 16 9 N -0.70 -32.02 5.06 -450.16 -2.28 -34.30 16 10 C 0.27 14.68 2.56 44.25 0.11 14.79 16 11 H 0.00 0.12 7.57 -2.39 -0.02 0.10 16 12 C -0.13 -7.07 9.26 71.98 0.67 -6.41 16 13 C -0.55 -29.98 8.73 25.60 0.22 -29.76 16 14 H 0.07 3.70 7.74 -2.91 -0.02 3.67 16 15 C 0.02 0.89 5.30 84.65 0.45 1.33 16 16 N -0.92 -53.19 11.32 21.45 0.24 -52.95 16 17 Si 0.98 42.29 29.54 68.60 2.03 44.31 16 18 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 21 S 0.22 5.56 22.10 -56.49 -1.25 4.31 16 22 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.17 2.57 8.06 -2.91 -0.02 2.54 16 28 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 29 H 0.40 15.80 7.65 -92.71 -0.71 15.09 16 30 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.07 4.09 6.07 -2.39 -0.01 4.07 16 32 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -68.95 298.15 2.82 -66.14 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.40 Total: 17.70 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 3.74 Total: -13.31 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -2.04 Total: -87.25 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.07 Total: -31.90 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: 5.56 SS G_CDS: -1.25 Total: 4.31 kcal Total: -68.95 2.82 -66.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336080.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.154 kcal (2) G-P(sol) polarization free energy of solvation -68.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds