Wall clock time and date at job start Sun Mar 29 2020 23:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50709 * 109.46828 * 2 1 4 4 C 1.33810 * 124.51995 * 89.72303 * 3 2 1 5 5 C 1.37477 * 115.09762 * 179.85007 * 4 3 2 6 6 C 1.36647 * 113.29900 * 0.42640 * 5 4 3 7 7 C 1.46584 * 125.46242 * 179.79046 * 6 5 4 8 8 O 1.21706 * 119.99413 * 351.40050 * 7 6 5 9 9 N 1.34767 * 120.00090 * 171.39754 * 7 6 5 10 10 C 1.46498 * 120.00347 * 0.12204 * 9 7 6 11 11 C 1.46505 * 120.00222 * 180.12314 * 9 7 6 12 12 C 1.50700 * 109.46980 * 89.99782 * 11 9 7 13 13 H 1.07999 * 120.00133 * 0.02562 * 12 11 9 14 14 C 1.37879 * 120.00011 * 180.02562 * 12 11 9 15 15 N 1.31509 * 120.00476 * 180.02562 * 14 12 11 16 16 Si 1.86810 * 119.99829 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.47032 * 90.00206 * 16 14 12 18 18 H 1.48492 * 109.46974 * 210.00130 * 16 14 12 19 19 H 1.48501 * 109.46813 * 330.00465 * 16 14 12 20 20 S 1.70620 * 124.52060 * 270.02168 * 3 2 1 21 21 H 1.08992 * 109.47459 * 299.99920 * 1 2 3 22 22 H 1.09002 * 109.46934 * 60.00399 * 1 2 3 23 23 H 1.09000 * 109.46953 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47551 * 119.99999 * 2 1 3 25 25 H 1.09002 * 109.47294 * 240.00091 * 2 1 3 26 26 H 1.08001 * 122.45510 * 0.02562 * 4 3 2 27 27 H 1.08000 * 123.35227 * 180.21653 * 5 4 3 28 28 H 1.09004 * 109.47082 * 83.45797 * 10 9 7 29 29 H 1.09004 * 109.47469 * 203.46330 * 10 9 7 30 30 H 1.09006 * 109.46794 * 323.46028 * 10 9 7 31 31 H 1.08995 * 109.47504 * 209.99871 * 11 9 7 32 32 H 1.09004 * 109.46766 * 330.00223 * 11 9 7 33 33 H 0.96997 * 120.00325 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2800 2.1376 1.1025 5 6 2.7361 3.4149 0.8774 6 6 2.8451 3.7240 -0.4491 7 6 3.2991 5.0092 -0.9884 8 8 3.4668 5.9566 -0.2431 9 7 3.5308 5.1416 -2.3094 10 6 3.3265 4.0019 -3.2069 11 6 3.9871 6.4254 -2.8480 12 6 5.4935 6.4684 -2.8356 13 1 6.0548 5.6238 -2.4641 14 6 6.1551 7.5860 -3.2985 15 7 7.4696 7.6234 -3.2882 16 14 5.1842 9.0466 -3.9417 17 1 4.9002 9.9828 -2.8246 18 1 5.9759 9.7465 -4.9850 19 1 3.9047 8.5714 -4.5268 20 16 2.3540 2.3327 -1.4058 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 2.1351 1.7408 2.0964 27 1 2.9805 4.1064 1.6702 28 1 2.2731 3.9388 -3.4799 29 1 3.9276 4.1353 -4.1063 30 1 3.6267 3.0836 -2.7021 31 1 3.6288 6.5382 -3.8712 32 1 3.5955 7.2367 -2.2343 33 1 7.9350 8.4097 -3.6136 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051770742.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:42 Heat of formation + Delta-G solvation = -3.958648 kcal Electronic energy + Delta-G solvation = -16168.385807 eV Core-core repulsion = 13513.967863 eV Total energy + Delta-G solvation = -2654.417944 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.19674 -37.72946 -34.99550 -33.77246 -32.56216 -29.50509 -27.92358 -26.31561 -24.95580 -22.75111 -22.19337 -20.15846 -18.18787 -17.46295 -16.97133 -15.86249 -15.44911 -14.93854 -14.76959 -14.22322 -14.07032 -13.54263 -13.07853 -12.82496 -12.71932 -12.62350 -12.28094 -12.02103 -11.88396 -11.65020 -11.53653 -11.23283 -11.01071 -10.56557 -10.24153 -10.17703 -9.58008 -9.25124 -8.60247 -8.50308 -8.36978 -7.74879 -6.09692 -4.09241 0.75755 1.66765 2.10367 2.62941 3.28763 3.34628 3.36691 3.66331 3.86558 4.38586 4.61508 4.85896 5.01283 5.08544 5.24229 5.31388 5.38440 5.52228 5.59052 5.64068 5.65531 5.81319 5.96350 6.02469 6.14687 6.31421 6.55011 6.66576 6.90495 7.23152 7.57552 8.11324 8.44337 8.84129 8.94434 9.49649 11.03614 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.046851 B = 0.005094 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.499544 B = 5495.149222 C = 5656.100808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.052 4.052 3 C -0.235 4.235 4 C -0.151 4.151 5 C -0.065 4.065 6 C -0.250 4.250 7 C 0.578 3.422 8 O -0.528 6.528 9 N -0.591 5.591 10 C 0.070 3.930 11 C 0.217 3.783 12 C -0.532 4.532 13 H 0.075 0.925 14 C 0.073 3.927 15 N -0.896 5.896 16 Si 0.876 3.124 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.265 1.265 20 S 0.219 5.781 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.134 0.866 27 H 0.149 0.851 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.034 0.966 32 H 0.040 0.960 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.720 -15.156 2.889 20.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.091 4.091 3 C -0.353 4.353 4 C -0.181 4.181 5 C -0.098 4.098 6 C -0.370 4.370 7 C 0.364 3.636 8 O -0.407 6.407 9 N -0.322 5.322 10 C -0.076 4.076 11 C 0.097 3.903 12 C -0.570 4.570 13 H 0.093 0.907 14 C -0.129 4.129 15 N -0.534 5.534 16 Si 0.703 3.297 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.190 1.190 20 S 0.488 5.512 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.152 0.848 27 H 0.167 0.833 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.581 -14.831 1.673 20.179 hybrid contribution -0.112 0.957 1.294 1.614 sum -13.693 -13.874 2.968 19.718 Atomic orbital electron populations 1.21788 0.94443 1.01753 1.02527 1.20066 0.96027 0.89992 1.03004 1.24840 1.07302 1.02466 1.00723 1.19843 1.04967 0.94156 0.99182 1.20681 0.97589 0.96210 0.95328 1.24864 1.14836 0.99427 0.97921 1.16945 0.78265 0.85942 0.82440 1.90799 1.52928 1.39481 1.57485 1.47707 1.65064 1.13533 1.05891 1.21886 1.01207 0.88448 0.96093 1.19741 0.96235 0.80462 0.93895 1.21323 0.89173 1.03764 1.42771 0.90662 1.24850 0.94802 0.98082 0.95173 1.69892 1.06986 1.29726 1.46830 0.86849 0.80314 0.83342 0.79190 1.19822 1.20998 1.19017 1.83542 1.59185 1.02508 1.05958 0.92334 0.92416 0.92211 0.90449 0.90923 0.84821 0.83320 0.92584 0.88646 0.91603 0.94836 0.94216 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 37.16 0.37 -0.76 16 2 C -0.05 -0.45 6.37 -27.88 -0.18 -0.63 16 3 C -0.23 -2.78 5.53 -35.86 -0.20 -2.97 16 4 C -0.15 -1.93 10.00 -41.41 -0.41 -2.34 16 5 C -0.07 -1.03 10.02 -40.43 -0.41 -1.43 16 6 C -0.25 -4.38 6.23 -36.79 -0.23 -4.61 16 7 C 0.58 12.76 7.64 -12.90 -0.10 12.67 16 8 O -0.53 -13.73 16.43 5.18 0.09 -13.64 16 9 N -0.59 -12.71 2.86 -184.54 -0.53 -13.23 16 10 C 0.07 1.11 8.92 59.85 0.53 1.65 16 11 C 0.22 5.37 4.20 -5.19 -0.02 5.35 16 12 C -0.53 -15.43 9.94 -34.44 -0.34 -15.78 16 13 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 14 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 15 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 16 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 17 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 20 S 0.22 2.84 17.84 -107.50 -1.92 0.92 16 21 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 27 H 0.15 2.32 8.06 -52.49 -0.42 1.90 16 28 H 0.06 0.74 7.77 -51.93 -0.40 0.33 16 29 H 0.09 1.50 8.02 -51.93 -0.42 1.08 16 30 H 0.07 0.97 4.61 -23.22 -0.11 0.87 16 31 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 32 H 0.04 1.04 6.85 -51.93 -0.36 0.69 16 33 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 291.09 15.07 4.39 4.39 Total: -1.00 -33.96 291.09 -7.15 -41.12 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -4.20 Total: -2.64 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -1.08 Total: -6.81 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.25 Total: -40.19 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.09 Total: -13.64 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -1.92 Total: 0.92 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.96 -7.15 -41.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051770742.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.157 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds