Wall clock time and date at job start Sun Mar 29 2020 23:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50709 * 109.46828 * 2 1 4 4 C 1.33810 * 124.51995 * 89.72303 * 3 2 1 5 5 C 1.37477 * 115.09762 * 179.85007 * 4 3 2 6 6 C 1.36647 * 113.29900 * 0.42640 * 5 4 3 7 7 C 1.46584 * 125.46242 * 179.79046 * 6 5 4 8 8 O 1.21706 * 119.99413 * 351.40050 * 7 6 5 9 9 N 1.34767 * 120.00090 * 171.39754 * 7 6 5 10 10 C 1.46498 * 120.00347 * 0.12204 * 9 7 6 11 11 C 1.46505 * 120.00222 * 180.12314 * 9 7 6 12 12 C 1.50700 * 109.46980 * 89.99782 * 11 9 7 13 13 H 1.07999 * 120.00133 * 0.02562 * 12 11 9 14 14 C 1.37879 * 120.00011 * 180.02562 * 12 11 9 15 15 N 1.31509 * 120.00476 * 180.02562 * 14 12 11 16 16 Si 1.86810 * 119.99829 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.47032 * 90.00206 * 16 14 12 18 18 H 1.48492 * 109.46974 * 210.00130 * 16 14 12 19 19 H 1.48501 * 109.46813 * 330.00465 * 16 14 12 20 20 S 1.70620 * 124.52060 * 270.02168 * 3 2 1 21 21 H 1.08992 * 109.47459 * 299.99920 * 1 2 3 22 22 H 1.09002 * 109.46934 * 60.00399 * 1 2 3 23 23 H 1.09000 * 109.46953 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47551 * 119.99999 * 2 1 3 25 25 H 1.09002 * 109.47294 * 240.00091 * 2 1 3 26 26 H 1.08001 * 122.45510 * 0.02562 * 4 3 2 27 27 H 1.08000 * 123.35227 * 180.21653 * 5 4 3 28 28 H 1.09004 * 109.47082 * 83.45797 * 10 9 7 29 29 H 1.09004 * 109.47469 * 203.46330 * 10 9 7 30 30 H 1.09006 * 109.46794 * 323.46028 * 10 9 7 31 31 H 1.08995 * 109.47504 * 209.99871 * 11 9 7 32 32 H 1.09004 * 109.46766 * 330.00223 * 11 9 7 33 33 H 0.96997 * 120.00325 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2800 2.1376 1.1025 5 6 2.7361 3.4149 0.8774 6 6 2.8451 3.7240 -0.4491 7 6 3.2991 5.0092 -0.9884 8 8 3.4668 5.9566 -0.2431 9 7 3.5308 5.1416 -2.3094 10 6 3.3265 4.0019 -3.2069 11 6 3.9871 6.4254 -2.8480 12 6 5.4935 6.4684 -2.8356 13 1 6.0548 5.6238 -2.4641 14 6 6.1551 7.5860 -3.2985 15 7 7.4696 7.6234 -3.2882 16 14 5.1842 9.0466 -3.9417 17 1 4.9002 9.9828 -2.8246 18 1 5.9759 9.7465 -4.9850 19 1 3.9047 8.5714 -4.5268 20 16 2.3540 2.3327 -1.4058 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 2.1351 1.7408 2.0964 27 1 2.9805 4.1064 1.6702 28 1 2.2731 3.9388 -3.4799 29 1 3.9276 4.1353 -4.1063 30 1 3.6267 3.0836 -2.7021 31 1 3.6288 6.5382 -3.8712 32 1 3.5955 7.2367 -2.2343 33 1 7.9350 8.4097 -3.6136 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051770742.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:41 Heat of formation + Delta-G solvation = -26.727722 kcal Electronic energy + Delta-G solvation = -16169.373148 eV Core-core repulsion = 13513.967863 eV Total energy + Delta-G solvation = -2655.405285 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.80833 -38.86481 -36.74535 -34.87588 -34.49645 -31.19240 -29.28242 -27.77103 -26.22286 -24.39484 -23.14020 -21.66689 -19.44174 -19.17474 -18.89345 -17.31399 -16.78829 -16.56969 -16.22482 -15.66895 -15.03345 -14.78661 -14.51109 -14.33410 -14.14197 -13.90918 -13.73008 -13.60821 -13.10553 -13.00675 -12.73552 -12.47917 -12.35259 -12.06407 -11.95226 -11.76851 -11.31481 -10.98011 -10.84617 -9.81811 -9.48768 -9.28386 -8.35665 -6.42194 -0.43795 0.52372 1.02125 1.32897 1.37756 1.44839 1.46046 2.09108 2.30161 2.31742 2.98397 3.62654 3.80455 4.09449 4.20467 4.38201 4.43655 4.46306 4.52721 4.69409 4.77506 4.83660 4.87022 4.96862 5.09012 5.19457 5.27213 5.39195 5.40349 5.47758 5.49801 6.19656 6.48491 6.58929 7.12823 7.26225 8.81437 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.046851 B = 0.005094 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.499544 B = 5495.149222 C = 5656.100808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.054 4.054 3 C -0.214 4.214 4 C -0.163 4.163 5 C -0.061 4.061 6 C -0.307 4.307 7 C 0.568 3.432 8 O -0.589 6.589 9 N -0.600 5.600 10 C 0.062 3.938 11 C 0.224 3.776 12 C -0.542 4.542 13 H 0.026 0.974 14 C 0.013 3.987 15 N -0.944 5.944 16 Si 0.950 3.050 17 H -0.277 1.277 18 H -0.272 1.272 19 H -0.234 1.234 20 S 0.275 5.725 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.079 0.921 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.161 0.839 27 H 0.136 0.864 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.022 0.978 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.257 -17.231 1.913 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.093 4.093 3 C -0.333 4.333 4 C -0.192 4.192 5 C -0.096 4.096 6 C -0.427 4.427 7 C 0.358 3.642 8 O -0.472 6.472 9 N -0.330 5.330 10 C -0.082 4.082 11 C 0.103 3.897 12 C -0.580 4.580 13 H 0.044 0.956 14 C -0.186 4.186 15 N -0.584 5.584 16 Si 0.772 3.228 17 H -0.203 1.203 18 H -0.197 1.197 19 H -0.157 1.157 20 S 0.544 5.456 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.098 0.902 24 H 0.112 0.888 25 H 0.106 0.894 26 H 0.178 0.822 27 H 0.154 0.846 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.040 0.960 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.138 -16.963 0.658 23.422 hybrid contribution 0.696 1.393 1.677 2.289 sum -15.442 -15.570 2.335 22.053 Atomic orbital electron populations 1.21797 0.93354 1.03077 1.02225 1.20278 0.96795 0.87627 1.04647 1.25371 1.04351 1.03720 0.99831 1.19978 1.05426 0.92877 1.00945 1.20864 0.96697 0.97393 0.94609 1.24525 1.18845 0.99754 0.99552 1.17617 0.77309 0.87103 0.82198 1.90733 1.55695 1.41964 1.58804 1.47785 1.64599 1.13942 1.06702 1.22211 1.03640 0.87069 0.95270 1.19459 0.93208 0.82104 0.94970 1.21528 0.91492 1.02540 1.42489 0.95552 1.25871 0.95870 1.01513 0.95305 1.70045 1.09124 1.31065 1.48186 0.85686 0.79940 0.78571 0.78585 1.20259 1.19745 1.15710 1.83080 1.57734 0.99569 1.05175 0.92710 0.92727 0.90161 0.88772 0.89397 0.82195 0.84603 0.88920 0.88398 0.90384 0.92062 0.95994 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.89 71.98 0.71 -0.93 16 2 C -0.05 -0.71 6.37 29.85 0.19 -0.52 16 3 C -0.21 -4.35 5.53 24.68 0.14 -4.21 16 4 C -0.16 -3.81 10.00 21.08 0.21 -3.60 16 5 C -0.06 -1.93 10.02 21.72 0.22 -1.72 16 6 C -0.31 -10.80 6.23 24.08 0.15 -10.65 16 7 C 0.57 26.08 7.64 86.42 0.66 26.74 16 8 O -0.59 -32.53 16.43 -4.37 -0.07 -32.60 16 9 N -0.60 -26.16 2.86 -855.98 -2.45 -28.61 16 10 C 0.06 1.90 8.92 127.77 1.14 3.04 16 11 C 0.22 11.23 4.20 85.63 0.36 11.59 16 12 C -0.54 -32.66 9.94 25.60 0.25 -32.41 16 13 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 14 C 0.01 0.76 5.47 84.66 0.46 1.22 16 15 N -0.94 -60.38 13.96 21.45 0.30 -60.08 16 16 Si 0.95 44.58 27.47 68.60 1.88 46.46 16 17 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.23 -9.73 6.54 99.48 0.65 -9.08 16 20 S 0.27 6.44 17.84 -56.49 -1.01 5.43 16 21 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 22 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.08 0.61 8.14 -2.39 -0.02 0.60 16 24 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 27 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 28 H 0.09 2.16 7.77 -2.39 -0.02 2.14 16 29 H 0.10 2.94 8.02 -2.38 -0.02 2.92 16 30 H 0.08 2.18 4.61 -20.64 -0.10 2.09 16 31 H 0.06 2.72 7.13 -2.39 -0.02 2.70 16 32 H 0.02 1.18 6.85 -2.38 -0.02 1.16 16 33 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -78.91 291.09 4.11 -74.79 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 0.96 Total: 6.06 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 4.49 Total: -11.45 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -2.15 Total: -88.69 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.07 Total: -32.60 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.46 kcal Atomic # 16 Polarization: 6.44 SS G_CDS: -1.01 Total: 5.43 kcal Total: -78.91 4.11 -74.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051770742.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.066 kcal (2) G-P(sol) polarization free energy of solvation -78.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds