Wall clock time and date at job start Sun Mar 29 2020 23:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.46977 * 2 1 4 4 C 1.33821 * 124.51743 * 90.00225 * 3 2 1 5 5 C 1.37477 * 115.09603 * 180.02562 * 4 3 2 6 6 C 1.36644 * 113.29671 * 359.97438 * 5 4 3 7 7 C 1.46586 * 125.45416 * 179.97438 * 6 5 4 8 8 O 1.21695 * 120.00258 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99696 * 180.02562 * 7 6 5 10 10 C 1.46506 * 120.00072 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47242 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99967 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00542 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99408 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47011 * 90.00022 * 16 14 12 18 18 H 1.48498 * 109.47118 * 209.99881 * 16 14 12 19 19 H 1.48499 * 109.47134 * 330.00401 * 16 14 12 20 20 S 1.70615 * 124.52383 * 270.27024 * 3 2 1 21 21 H 1.08992 * 109.46941 * 60.00190 * 1 2 3 22 22 H 1.09002 * 109.46730 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47044 * 299.99395 * 1 2 3 24 24 H 1.08996 * 109.47460 * 240.00443 * 2 1 3 25 25 H 1.09001 * 109.47521 * 119.99865 * 2 1 3 26 26 H 1.08003 * 122.45184 * 359.97438 * 4 3 2 27 27 H 1.07998 * 123.34575 * 180.02562 * 5 4 3 28 28 H 0.97001 * 120.00676 * 359.97438 * 9 7 6 29 29 H 1.09001 * 109.47060 * 300.00359 * 10 9 7 30 30 H 1.09004 * 109.47073 * 59.99848 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99854 * 11 10 9 32 32 H 1.08996 * 109.46952 * 59.99873 * 11 10 9 33 33 H 0.96999 * 119.99910 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2851 2.1358 1.1026 5 6 2.7366 3.4147 0.8776 6 6 2.8459 3.7236 -0.4490 7 6 3.2992 5.0091 -0.9881 8 8 3.6156 5.9086 -0.2319 9 7 3.3647 5.1953 -2.3213 10 6 3.8172 6.4802 -2.8602 11 6 3.7978 6.4274 -4.3892 12 6 4.2639 7.7489 -4.9435 13 1 4.5454 8.5469 -4.2724 14 6 4.3309 7.9394 -6.3074 15 7 3.9876 6.9678 -7.1246 16 14 4.9080 9.5778 -6.9944 17 1 6.3815 9.5468 -7.1765 18 1 4.2525 9.8239 -8.3040 19 1 4.5489 10.6651 -6.0490 20 16 2.3484 2.3347 -1.4057 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.1439 1.7376 2.0966 27 1 2.9814 4.1059 1.6704 28 1 3.1121 4.4785 -2.9242 29 1 3.1529 7.2729 -2.5159 30 1 4.8317 6.6815 -2.5161 31 1 4.4619 5.6347 -4.7338 32 1 2.7831 6.2263 -4.7328 33 1 4.0344 7.1019 -8.0841 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054137808.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:45 Heat of formation + Delta-G solvation = -30.394585 kcal Electronic energy + Delta-G solvation = -15429.682160 eV Core-core repulsion = 12774.117868 eV Total energy + Delta-G solvation = -2655.564292 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.38010 -37.90696 -34.89815 -33.91307 -32.86042 -30.10013 -28.55566 -25.68355 -24.38989 -22.53521 -21.55891 -20.76623 -19.07087 -17.82039 -16.39737 -16.15198 -15.33980 -15.01875 -14.73825 -14.49468 -14.31183 -13.93981 -13.39737 -13.07351 -12.87356 -12.44880 -12.28015 -12.02987 -11.75882 -11.37174 -11.22902 -11.04180 -10.90045 -10.64438 -10.35687 -9.92178 -9.54732 -9.25598 -8.80991 -8.65579 -8.52709 -8.35539 -6.09716 -4.12681 0.50073 1.40894 1.83957 2.38012 3.29665 3.35635 3.39550 3.47689 3.61760 4.41602 4.43346 4.73619 4.96080 5.08580 5.14869 5.27378 5.31698 5.43983 5.52752 5.65039 5.87279 5.92358 6.07993 6.29681 6.32318 6.35234 6.70415 6.82840 7.49947 7.59854 7.87776 7.91908 8.26032 8.53515 8.93036 9.52168 11.01945 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.040893 B = 0.003871 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.550553 B = 7232.203848 C = 7811.839336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C -0.201 4.201 4 C -0.152 4.152 5 C -0.061 4.061 6 C -0.257 4.257 7 C 0.580 3.420 8 O -0.539 6.539 9 N -0.717 5.717 10 C 0.122 3.878 11 C 0.012 3.988 12 C -0.522 4.522 13 H 0.060 0.940 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.898 3.102 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.272 1.272 20 S 0.204 5.796 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.141 0.859 27 H 0.151 0.849 28 H 0.395 0.605 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.940 -15.262 13.085 20.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.320 4.320 4 C -0.183 4.183 5 C -0.094 4.094 6 C -0.378 4.378 7 C 0.365 3.635 8 O -0.419 6.419 9 N -0.366 5.366 10 C 0.000 4.000 11 C -0.026 4.026 12 C -0.560 4.560 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.725 3.275 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.197 1.197 20 S 0.472 5.528 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.101 0.899 26 H 0.159 0.841 27 H 0.169 0.831 28 H 0.228 0.772 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.830 -14.912 11.834 19.910 hybrid contribution 0.293 0.745 0.819 1.145 sum -5.537 -14.167 12.653 19.786 Atomic orbital electron populations 1.21808 0.94128 1.02067 1.02692 1.20133 0.96322 0.89477 1.03421 1.24259 1.07696 1.02073 0.98020 1.19918 1.04883 0.94152 0.99394 1.20720 0.97257 0.96202 0.95252 1.24809 1.15297 0.99614 0.98037 1.17016 0.78216 0.85421 0.82877 1.90795 1.50089 1.42814 1.58211 1.46255 1.66684 1.18089 1.05567 1.21800 0.98745 0.82036 0.97429 1.19340 0.97995 0.98312 0.86935 1.21037 1.44832 0.98475 0.91700 0.92181 1.24998 0.95203 0.97016 0.97064 1.69957 1.47999 1.32145 1.03162 0.86499 0.78828 0.83785 0.78372 1.20549 1.21159 1.19708 1.83129 1.59629 1.02590 1.07410 0.92252 0.91956 0.92219 0.90607 0.89948 0.84128 0.83098 0.77160 0.92212 0.92207 0.95856 0.95847 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.89 37.16 0.37 -0.64 16 2 C -0.05 -0.40 6.37 -27.88 -0.18 -0.58 16 3 C -0.20 -2.04 5.53 -35.86 -0.20 -2.24 16 4 C -0.15 -1.61 10.00 -41.41 -0.41 -2.03 16 5 C -0.06 -0.80 10.01 -40.43 -0.40 -1.21 16 6 C -0.26 -3.84 6.45 -36.79 -0.24 -4.07 16 7 C 0.58 10.79 7.78 -12.90 -0.10 10.69 16 8 O -0.54 -11.76 16.84 5.19 0.09 -11.67 16 9 N -0.72 -13.41 5.55 -61.64 -0.34 -13.75 16 10 C 0.12 2.66 5.61 -4.04 -0.02 2.63 16 11 C 0.01 0.29 5.09 -27.89 -0.14 0.15 16 12 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 13 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 16 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 S 0.20 2.40 22.10 -107.50 -2.38 0.03 16 21 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 27 H 0.15 1.91 8.06 -52.49 -0.42 1.48 16 28 H 0.39 6.58 7.59 -40.82 -0.31 6.27 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 302.97 15.07 4.57 4.57 Total: -1.00 -31.46 302.97 -8.59 -40.05 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -4.50 Total: 0.37 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -1.74 Total: -10.58 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.39 Total: -39.16 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -2.38 Total: 0.03 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.46 -8.59 -40.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137808.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.655 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds