Wall clock time and date at job start Sun Mar 29 2020 23:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.47177 * 179.97438 * 16 14 13 18 18 C 1.33392 * 125.20147 * 89.99712 * 17 16 14 19 19 C 1.38421 * 114.91875 * 179.97438 * 18 17 16 20 20 C 1.33384 * 114.92451 * 0.02562 * 19 18 17 21 21 S 1.75885 * 125.20467 * 269.69880 * 17 16 14 22 22 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 23 23 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 25 25 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 26 26 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 27 27 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 28 28 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 29 29 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 30 30 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 31 31 H 1.07996 * 122.53732 * 359.96385 * 18 17 16 32 32 H 1.08005 * 122.53774 * 180.02562 * 19 18 17 33 33 H 1.08000 * 125.20193 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 -1.3313 3.8751 -2.5735 18 6 -1.6461 5.0990 -2.1464 19 6 -3.0014 5.3801 -2.1292 20 6 -3.7872 4.3844 -2.5417 21 16 -2.7990 3.0010 -2.9923 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 5.8117 0.4042 0.4384 28 1 2.2954 2.1150 -1.9977 29 1 0.7620 4.1421 -2.8933 30 1 0.1091 2.6000 -3.4965 31 1 -0.9001 5.8161 -1.8374 32 1 -3.3929 6.3335 -1.8062 33 1 -4.8652 4.4235 -2.5957 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054177098.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:10 Heat of formation + Delta-G solvation = -35.382431 kcal Electronic energy + Delta-G solvation = -16438.835112 eV Core-core repulsion = 13783.054530 eV Total energy + Delta-G solvation = -2655.780582 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.82172 -38.60624 -36.97991 -34.46705 -33.62822 -32.48171 -29.31305 -27.78247 -24.56652 -24.04852 -22.25642 -21.18845 -20.16707 -19.77962 -18.07674 -17.80469 -17.08695 -16.36940 -16.26725 -15.53841 -14.90612 -14.64899 -14.46615 -14.40326 -13.88264 -13.61430 -13.49743 -13.37869 -13.20132 -12.66456 -12.50653 -12.41573 -12.26462 -11.77668 -11.64000 -11.57624 -11.22615 -10.75092 -10.40652 -9.75990 -9.54329 -9.32904 -8.80557 -6.39856 0.10019 0.76860 1.13640 1.45972 1.47789 1.68921 1.82349 1.86108 2.41843 2.63312 2.93307 3.69401 4.10868 4.23172 4.28627 4.31769 4.40403 4.53048 4.56094 4.73298 4.76879 4.88079 5.08967 5.22335 5.24128 5.30648 5.41547 5.55142 5.62155 5.71667 5.72957 6.03957 6.56258 6.90690 7.28215 7.50839 8.55975 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.038064 B = 0.005331 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.422871 B = 5250.825128 C = 5288.427516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.128 4.128 3 C 0.256 3.744 4 H 0.019 0.981 5 C -0.625 4.625 6 H 0.043 0.957 7 C 0.008 3.992 8 N -0.916 5.916 9 Si 1.061 2.939 10 H -0.280 1.280 11 H -0.275 1.275 12 H -0.257 1.257 13 N -0.705 5.705 14 C 0.500 3.500 15 O -0.573 6.573 16 C -0.066 4.066 17 C -0.168 4.168 18 C -0.143 4.143 19 C -0.142 4.142 20 C -0.215 4.215 21 S 0.085 5.915 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.036 0.964 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.262 0.738 28 H 0.404 0.596 29 H 0.132 0.868 30 H 0.122 0.878 31 H 0.143 0.857 32 H 0.160 0.840 33 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.492 6.670 -10.390 19.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.167 4.167 3 C 0.151 3.849 4 H 0.036 0.964 5 C -0.663 4.663 6 H 0.062 0.938 7 C -0.195 4.195 8 N -0.550 5.550 9 Si 0.884 3.116 10 H -0.206 1.206 11 H -0.201 1.201 12 H -0.182 1.182 13 N -0.354 5.354 14 C 0.287 3.713 15 O -0.453 6.453 16 C -0.107 4.107 17 C -0.285 4.285 18 C -0.173 4.173 19 C -0.172 4.172 20 C -0.350 4.350 21 S 0.348 5.652 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.238 0.762 29 H 0.150 0.850 30 H 0.140 0.860 31 H 0.161 0.839 32 H 0.178 0.822 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -16.216 4.906 -8.676 19.034 hybrid contribution 1.046 1.610 -1.309 2.324 sum -15.170 6.516 -9.985 19.294 Atomic orbital electron populations 1.21751 0.95627 1.00166 1.01334 1.22119 0.95134 0.98562 1.00852 1.18670 0.93408 0.89395 0.83462 0.96363 1.22161 0.91488 1.48652 1.03969 0.93830 1.26595 0.96701 0.91332 1.04863 1.70956 1.15053 1.38874 1.30084 0.83791 0.75797 0.78208 0.73822 1.20595 1.20082 1.18208 1.46096 1.15585 1.56513 1.17205 1.21018 0.81568 0.78471 0.90249 1.90669 1.51383 1.60391 1.42856 1.20223 0.92448 1.02536 0.95526 1.23977 0.97836 0.97938 1.08767 1.20361 0.97610 0.96981 1.02363 1.20386 0.92415 1.01429 1.02981 1.25904 1.04390 0.95999 1.08756 1.84165 0.97524 1.18651 1.64821 0.93101 0.92741 0.94494 0.92750 0.93346 0.92841 0.76159 0.84989 0.86021 0.83889 0.82210 0.79563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.19 8.53 71.98 0.61 -4.58 16 2 C -0.13 -5.61 5.37 30.60 0.16 -5.45 16 3 C 0.26 12.00 1.84 44.25 0.08 12.08 16 4 H 0.02 0.96 6.12 -2.39 -0.01 0.94 16 5 C -0.63 -33.60 8.92 25.60 0.23 -33.37 16 6 H 0.04 2.46 7.96 -2.91 -0.02 2.43 16 7 C 0.01 0.46 5.15 84.66 0.44 0.90 16 8 N -0.92 -54.58 13.70 21.45 0.29 -54.29 16 9 Si 1.06 50.56 26.56 68.60 1.82 52.38 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.26 -11.52 6.34 99.48 0.63 -10.88 16 13 N -0.70 -26.93 5.03 -446.10 -2.24 -29.17 16 14 C 0.50 17.71 6.42 87.66 0.56 18.27 16 15 O -0.57 -24.48 13.18 -3.04 -0.04 -24.52 16 16 C -0.07 -1.64 6.19 29.10 0.18 -1.46 16 17 C -0.17 -4.40 5.00 24.59 0.12 -4.27 16 18 C -0.14 -3.54 10.05 21.22 0.21 -3.33 16 19 C -0.14 -3.04 10.18 21.21 0.22 -2.82 16 20 C -0.22 -4.44 11.23 66.72 0.75 -3.69 16 21 S 0.09 2.05 23.33 -56.49 -1.32 0.73 16 22 H 0.05 1.97 5.63 -2.39 -0.01 1.96 16 23 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 24 H 0.04 1.54 7.89 -2.39 -0.02 1.53 16 25 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.05 2.24 5.77 -2.39 -0.01 2.23 16 27 H 0.26 15.57 8.73 -92.71 -0.81 14.76 16 28 H 0.40 13.46 8.53 -92.71 -0.79 12.67 16 29 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.12 2.43 8.14 -2.39 -0.02 2.42 16 31 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 32 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 33 H 0.19 2.70 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -66.21 288.60 2.30 -63.91 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.21 Total: 18.68 kcal Atomic # 6 Polarization: -31.28 SS G_CDS: 3.57 Total: -27.72 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -1.95 Total: -83.47 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.04 Total: -24.52 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 1.82 Total: 52.38 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -1.32 Total: 0.73 kcal Total: -66.21 2.30 -63.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177098.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.528 kcal (2) G-P(sol) polarization free energy of solvation -66.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds