Wall clock time and date at job start Sun Mar 29 2020 23:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5 12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21276 * 120.00121 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 C 1.50694 * 109.47268 * 179.97438 * 16 14 13 18 18 C 1.33390 * 125.20468 * 89.99852 * 17 16 14 19 19 C 1.38423 * 114.92315 * 179.97438 * 18 17 16 20 20 C 1.33387 * 114.92113 * 0.02562 * 19 18 17 21 21 S 1.75884 * 109.59243 * 359.75552 * 20 19 18 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 28 28 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 29 29 H 1.08998 * 109.47466 * 299.99891 * 16 14 13 30 30 H 1.09003 * 109.47620 * 60.00219 * 16 14 13 31 31 H 1.07997 * 122.53742 * 359.96292 * 18 17 16 32 32 H 1.08000 * 122.54217 * 180.02562 * 19 18 17 33 33 H 1.08004 * 125.20301 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1938 11 1 6.4963 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 6 -1.3610 3.8862 2.5231 18 6 -2.4789 3.2233 2.8234 19 6 -3.6500 3.9331 2.6216 20 6 -3.4833 5.1722 2.1569 21 16 -1.7671 5.5009 1.9563 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8292 -0.0604 -2.9503 28 1 2.2720 2.1231 1.9978 29 1 0.0673 2.6129 3.4685 30 1 0.7277 4.1529 2.8680 31 1 -2.4708 2.2095 3.1956 32 1 -4.6249 3.5152 2.8249 33 1 -4.2800 5.8688 1.9414 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177100.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:13 Heat of formation + Delta-G solvation = -14.817297 kcal Electronic energy + Delta-G solvation = -16368.313323 eV Core-core repulsion = 13713.424512 eV Total energy + Delta-G solvation = -2654.888810 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.15348 -37.47549 -35.03666 -32.46674 -31.93340 -30.67925 -27.47435 -26.35296 -23.42701 -22.74167 -20.41520 -19.32030 -19.07572 -17.31482 -16.78230 -15.68504 -15.44439 -15.17353 -14.67754 -14.16127 -13.30655 -13.06947 -12.79574 -12.59846 -12.45336 -12.18185 -11.91696 -11.56448 -11.25261 -11.18798 -10.95521 -10.82963 -10.59913 -10.30466 -10.16559 -9.61806 -9.09710 -9.00686 -8.51136 -8.42647 -8.28879 -7.79880 -6.12208 -4.21616 1.14654 1.79527 2.15878 2.89580 3.23387 3.31391 3.33801 3.42877 4.17321 4.41435 4.84125 5.14901 5.19118 5.31862 5.55972 5.57831 5.70299 5.80145 6.24806 6.40336 6.42305 6.47246 6.62546 6.67806 7.05030 7.21470 7.38466 7.47532 7.62935 7.74515 7.91319 8.19031 8.68507 8.78916 9.16315 9.46124 10.93156 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.040050 B = 0.004970 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.960396 B = 5632.419346 C = 5948.924551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.710 5.710 14 C 0.501 3.499 15 O -0.537 6.537 16 C -0.078 4.078 17 C -0.139 4.139 18 C -0.138 4.138 19 C -0.130 4.130 20 C -0.224 4.224 21 S 0.103 5.897 22 H 0.049 0.951 23 H 0.038 0.962 24 H 0.021 0.979 25 H 0.030 0.970 26 H 0.098 0.902 27 H 0.264 0.736 28 H 0.388 0.612 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.599 6.352 10.889 15.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.358 5.358 14 C 0.284 3.716 15 O -0.415 6.415 16 C -0.120 4.120 17 C -0.257 4.257 18 C -0.168 4.168 19 C -0.161 4.161 20 C -0.359 4.359 21 S 0.366 5.634 22 H 0.068 0.932 23 H 0.058 0.942 24 H 0.040 0.960 25 H 0.049 0.951 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.220 0.780 29 H 0.123 0.877 30 H 0.115 0.885 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.302 7.479 9.509 14.672 hybrid contribution 0.415 -1.302 0.640 1.510 sum -7.887 6.176 10.150 14.261 Atomic orbital electron populations 1.21833 0.98331 0.97948 1.01268 1.21928 0.92608 0.99849 1.02214 1.18777 0.94153 0.89153 0.81050 0.93360 1.21277 0.90754 1.38894 1.06261 0.92051 1.24893 0.98582 0.94826 0.95400 1.69910 1.35025 1.37706 1.09325 0.86411 0.84913 0.77763 0.78114 1.19748 1.20882 1.20896 1.46482 1.14537 1.56197 1.18580 1.20154 0.82927 0.79729 0.88784 1.90697 1.51220 1.59290 1.40250 1.20284 0.91897 1.01167 0.98679 1.23856 0.98242 0.97521 1.06047 1.20022 0.91082 1.01053 1.04622 1.20081 0.99359 0.94138 1.02521 1.25516 0.99002 1.01525 1.09893 1.84178 1.00555 1.13310 1.65324 0.93202 0.94248 0.95951 0.95086 0.88355 0.92631 0.78004 0.87673 0.88457 0.84627 0.84661 0.82281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.09 5.45 -26.74 -0.15 -3.23 16 3 C 0.27 6.75 2.24 -69.08 -0.15 6.60 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.72 11.30 55.43 0.63 -24.09 16 9 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.71 -14.34 5.02 -54.94 -0.28 -14.61 16 14 C 0.50 9.65 6.39 -10.99 -0.07 9.58 16 15 O -0.54 -12.44 13.17 5.56 0.07 -12.36 16 16 C -0.08 -1.10 6.19 -29.04 -0.18 -1.28 16 17 C -0.14 -2.05 5.00 -36.01 -0.18 -2.23 16 18 C -0.14 -1.92 10.05 -41.21 -0.41 -2.33 16 19 C -0.13 -1.63 10.18 -41.21 -0.42 -2.04 16 20 C -0.22 -2.74 11.23 29.04 0.33 -2.41 16 21 S 0.10 1.41 23.33 -107.50 -2.51 -1.09 16 22 H 0.05 1.20 7.85 -51.93 -0.41 0.80 16 23 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.39 6.70 8.54 -40.82 -0.35 6.35 16 29 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.16 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 291.29 15.07 4.39 4.39 Total: -1.00 -30.43 291.29 -8.28 -38.72 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -4.25 Total: 6.27 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -1.32 Total: -12.70 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.35 Total: -38.71 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.07 Total: -12.36 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.51 Total: -1.09 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.43 -8.28 -38.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177100.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.901 kcal (2) G-P(sol) polarization free energy of solvation -30.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds