Wall clock time and date at job start Sun Mar 29 2020 23:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33815 * 124.52264 * 2 1 4 4 C 1.37473 * 115.10295 * 179.97438 * 3 2 1 5 5 C 1.36650 * 113.29586 * 0.02562 * 4 3 2 6 6 C 1.46579 * 125.46097 * 179.97438 * 5 4 3 7 7 O 1.21711 * 119.99612 * 352.57666 * 6 5 4 8 8 N 1.34775 * 120.00538 * 172.30340 * 6 5 4 9 9 C 1.46502 * 119.99398 * 354.24865 * 8 6 5 10 10 C 1.46496 * 120.00206 * 174.24284 * 8 6 5 11 11 H 1.08999 * 109.47402 * 359.97438 * 10 8 6 12 12 C 1.53003 * 109.47028 * 239.99754 * 10 8 6 13 13 C 1.50700 * 109.46882 * 120.00391 * 10 8 6 14 14 H 1.08005 * 120.00203 * 359.97438 * 13 10 8 15 15 C 1.37879 * 120.00062 * 180.02562 * 13 10 8 16 16 N 1.31515 * 120.00105 * 359.97438 * 15 13 10 17 17 Si 1.86795 * 120.00269 * 179.97438 * 15 13 10 18 18 H 1.48510 * 109.47316 * 59.99773 * 17 15 13 19 19 H 1.48497 * 109.47492 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47110 * 299.99916 * 17 15 13 21 21 S 1.70614 * 124.52382 * 180.29045 * 2 1 3 22 22 H 1.08998 * 109.46916 * 89.99762 * 1 2 3 23 23 H 1.08996 * 109.46826 * 209.99915 * 1 2 3 24 24 H 1.09006 * 109.46893 * 329.99753 * 1 2 3 25 25 H 1.08004 * 122.44910 * 359.97438 * 3 2 1 26 26 H 1.07994 * 123.35640 * 180.02562 * 4 3 2 27 27 H 1.09001 * 109.47679 * 84.01281 * 9 8 6 28 28 H 1.09006 * 109.46961 * 204.01041 * 9 8 6 29 29 H 1.08997 * 109.47418 * 324.00558 * 9 8 6 30 30 H 1.08996 * 109.47605 * 300.00699 * 12 10 8 31 31 H 1.09007 * 109.46848 * 60.00444 * 12 10 8 32 32 H 1.09002 * 109.46916 * 179.97438 * 12 10 8 33 33 H 0.96997 * 120.00250 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8775 0.0006 5 6 3.9493 -0.4491 0.0005 6 6 5.3123 -0.9883 0.0004 7 8 6.2626 -0.2402 -0.1357 8 7 5.5135 -2.3118 0.1566 9 6 4.3824 -3.1947 0.4520 10 6 6.8632 -2.8674 0.0309 11 1 7.5674 -2.0651 -0.1892 12 6 6.8887 -3.8933 -1.1040 13 6 7.2527 -3.5380 1.3230 14 1 6.5639 -3.5489 2.1549 15 6 8.4888 -4.1368 1.4437 16 7 9.3277 -4.1232 0.4310 17 14 8.9719 -4.9675 3.0455 18 1 8.0127 -6.0610 3.3451 19 1 10.3399 -5.5308 2.9181 20 1 8.9467 -3.9716 4.1467 21 16 2.4740 -1.4057 -0.0071 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.8429 2.0965 -0.0004 26 1 4.3550 1.6702 0.0010 27 1 3.8843 -3.4707 -0.4774 28 1 4.7440 -4.0938 0.9512 29 1 3.6774 -2.6769 1.1023 30 1 6.1844 -4.6957 -0.8844 31 1 6.6070 -3.4082 -2.0386 32 1 7.8931 -4.3063 -1.1978 33 1 10.1972 -4.5448 0.5157 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094054.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:31 Heat of formation + Delta-G solvation = -4.106977 kcal Electronic energy + Delta-G solvation = -16481.181905 eV Core-core repulsion = 13826.757529 eV Total energy + Delta-G solvation = -2654.424376 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.17597 -37.55640 -35.30628 -32.99624 -31.85552 -29.61894 -26.94769 -26.24861 -25.22361 -23.44184 -21.83993 -19.60022 -18.14188 -17.38874 -16.42582 -15.63502 -15.43900 -14.74753 -14.67868 -13.97867 -13.87437 -13.18945 -12.83318 -12.66455 -12.55352 -12.33684 -12.09766 -11.87667 -11.59589 -11.53016 -11.07346 -10.86867 -10.73409 -10.34863 -10.23989 -10.17459 -9.26486 -9.11441 -8.46226 -8.44035 -8.33283 -7.62368 -6.08248 -4.16517 0.78148 1.70229 2.13620 2.64247 3.28030 3.33289 3.35094 3.79450 3.92093 4.39276 4.82104 5.12489 5.15466 5.23311 5.36578 5.46736 5.57098 5.66543 5.83604 5.85017 6.15577 6.25428 6.35383 6.56573 6.73490 6.81300 7.02883 7.36917 7.49888 7.69022 7.98896 8.16793 8.44407 8.79905 8.97587 9.49729 10.97162 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.038112 B = 0.005587 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.493397 B = 5010.180022 C = 5170.349792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.240 4.240 3 C -0.154 4.154 4 C -0.069 4.069 5 C -0.249 4.249 6 C 0.573 3.427 7 O -0.540 6.540 8 N -0.586 5.586 9 C 0.069 3.931 10 C 0.259 3.741 11 H 0.065 0.935 12 C -0.147 4.147 13 C -0.528 4.528 14 H 0.060 0.940 15 C 0.066 3.934 16 N -0.887 5.887 17 Si 0.900 3.100 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.277 1.277 21 S 0.221 5.779 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.134 0.866 26 H 0.149 0.851 27 H 0.051 0.949 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.030 0.970 31 H 0.012 0.988 32 H 0.095 0.905 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.467 3.819 -1.176 16.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.359 4.359 3 C -0.185 4.185 4 C -0.102 4.102 5 C -0.370 4.370 6 C 0.359 3.641 7 O -0.420 6.420 8 N -0.316 5.316 9 C -0.077 4.077 10 C 0.159 3.841 11 H 0.083 0.917 12 C -0.205 4.205 13 C -0.567 4.567 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.525 5.525 17 Si 0.727 3.273 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.202 1.202 21 S 0.490 5.510 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.152 0.848 26 H 0.166 0.834 27 H 0.069 0.931 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.031 0.969 32 H 0.114 0.886 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.089 2.577 -1.319 16.347 hybrid contribution 0.456 1.139 0.889 1.515 sum -15.633 3.716 -0.430 16.074 Atomic orbital electron populations 1.20300 0.88164 1.02893 1.02484 1.24756 1.01694 1.00580 1.08864 1.19856 0.92686 0.99155 1.06757 1.20675 0.95978 0.95360 0.98163 1.24960 0.97378 0.97841 1.16772 1.17032 0.86144 0.82833 0.78052 1.90780 1.41886 1.57704 1.51629 1.48133 1.10826 1.05368 1.67311 1.21781 0.88827 0.96903 1.00175 1.19007 0.76691 0.93523 0.94847 0.91690 1.22107 1.03809 0.98846 0.95767 1.21268 1.01147 1.36069 0.98166 0.92218 1.24887 0.96048 0.95970 0.96773 1.69865 1.08162 1.44125 1.30363 0.86533 0.77607 0.79578 0.83534 1.20205 1.21143 1.20218 1.83586 0.93725 1.05883 1.67837 0.90937 0.91438 0.90986 0.84809 0.83373 0.93051 0.88241 0.92087 0.95040 0.96925 0.88643 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.31 36.01 0.37 -0.31 16 2 C -0.24 -2.91 6.28 -35.86 -0.23 -3.14 16 3 C -0.15 -1.99 9.99 -41.41 -0.41 -2.41 16 4 C -0.07 -1.09 10.02 -40.43 -0.41 -1.50 16 5 C -0.25 -4.43 6.19 -36.79 -0.23 -4.65 16 6 C 0.57 12.83 7.63 -12.90 -0.10 12.73 16 7 O -0.54 -14.09 16.20 5.18 0.08 -14.01 16 8 N -0.59 -12.99 2.75 -176.84 -0.49 -13.48 16 9 C 0.07 1.20 7.76 59.85 0.46 1.66 16 10 C 0.26 6.70 2.62 -69.08 -0.18 6.52 16 11 H 0.07 1.94 6.91 -51.93 -0.36 1.59 16 12 C -0.15 -3.51 8.97 37.16 0.33 -3.18 16 13 C -0.53 -14.29 7.95 -34.44 -0.27 -14.57 16 14 H 0.06 1.59 7.44 -52.48 -0.39 1.20 16 15 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 16 N -0.89 -25.04 11.32 55.43 0.63 -24.41 16 17 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 S 0.22 2.98 17.87 -107.50 -1.92 1.06 16 22 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 26 H 0.15 2.31 8.06 -52.49 -0.42 1.89 16 27 H 0.05 0.78 7.48 -51.93 -0.39 0.39 16 28 H 0.10 1.77 7.12 -51.93 -0.37 1.40 16 29 H 0.06 0.94 5.16 -28.04 -0.14 0.80 16 30 H 0.03 0.68 7.67 -51.93 -0.40 0.29 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 2.49 6.07 -51.93 -0.32 2.18 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 LS Contribution 286.87 15.07 4.32 4.32 Total: -1.00 -31.07 286.87 -7.18 -38.25 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -4.04 Total: -0.55 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -0.75 Total: -7.15 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.14 Total: -37.89 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.08 Total: -14.01 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -1.92 Total: 1.06 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.07 -7.18 -38.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094054.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.140 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds