Wall clock time and date at job start Sun Mar 29 2020 23:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37478 * 123.35113 * 2 1 4 4 C 1.33810 * 115.09792 * 180.27244 * 3 2 1 5 5 S 1.70614 * 110.95773 * 359.74524 * 4 3 2 6 6 C 1.36641 * 123.35158 * 179.79566 * 2 1 3 7 7 C 1.46587 * 125.45816 * 0.02562 * 6 2 1 8 8 O 1.21697 * 119.99977 * 8.77330 * 7 6 2 9 9 N 1.34779 * 119.99678 * 188.77259 * 7 6 2 10 10 C 1.46492 * 120.00482 * 358.93800 * 9 7 6 11 11 C 1.46504 * 119.99675 * 178.94199 * 9 7 6 12 12 H 1.09001 * 109.46779 * 359.97438 * 11 9 7 13 13 C 1.52997 * 109.46931 * 240.00163 * 11 9 7 14 14 C 1.50701 * 109.47238 * 119.99961 * 11 9 7 15 15 H 1.07996 * 119.99868 * 359.97438 * 14 11 9 16 16 C 1.37873 * 119.99902 * 180.02562 * 14 11 9 17 17 N 1.31515 * 120.00265 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00037 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47113 * 89.99822 * 18 16 14 20 20 H 1.48502 * 109.47390 * 210.00085 * 18 16 14 21 21 H 1.48506 * 109.47264 * 329.99992 * 18 16 14 22 22 H 1.09006 * 109.47102 * 270.20319 * 1 2 3 23 23 H 1.09002 * 109.47029 * 30.20193 * 1 2 3 24 24 H 1.08997 * 109.46918 * 150.20565 * 1 2 3 25 25 H 1.07994 * 122.44944 * 0.03776 * 3 2 1 26 26 H 1.08004 * 124.51984 * 179.72630 * 4 3 2 27 27 H 1.08995 * 109.47472 * 276.38816 * 10 9 7 28 28 H 1.09009 * 109.47166 * 36.38532 * 10 9 7 29 29 H 1.09000 * 109.47184 * 156.38116 * 10 9 7 30 30 H 1.09001 * 109.47033 * 299.99409 * 13 11 9 31 31 H 1.09007 * 109.46861 * 180.02562 * 13 11 9 32 32 H 1.08993 * 109.47623 * 59.99847 * 13 11 9 33 33 H 0.97000 * 120.00450 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1484 0.0000 4 6 3.5871 0.9563 -0.0058 5 16 3.9623 -0.7081 -0.0045 6 6 2.2582 -1.1414 0.0041 7 6 1.7284 -2.5081 0.0084 8 8 0.5373 -2.6995 -0.1522 9 7 2.5603 -3.5528 0.1902 10 6 3.9973 -3.3240 0.3602 11 6 2.0276 -4.9173 0.2177 12 1 0.9472 -4.8883 0.0761 13 6 2.3474 -5.5624 1.5676 14 6 2.6582 -5.7251 -0.8872 15 1 3.3830 -5.2678 -1.5444 16 6 2.3091 -7.0477 -1.0596 17 7 1.4254 -7.6042 -0.2602 18 14 3.0902 -8.0490 -2.4296 19 1 4.3262 -8.6990 -1.9247 20 1 2.1354 -9.0898 -2.8883 21 1 3.4300 -7.1540 -3.5649 22 1 -0.3633 0.0036 1.0277 23 1 -0.3633 0.8882 -0.5170 24 1 -0.3633 -0.8918 -0.5106 25 1 1.8202 2.1334 0.0006 26 1 4.3205 1.7491 -0.0109 27 1 4.4679 -3.2261 -0.6180 28 1 4.1544 -2.4093 0.9321 29 1 4.4387 -4.1660 0.8933 30 1 3.4277 -5.5913 1.7097 31 1 1.9514 -6.5778 1.5879 32 1 1.8913 -4.9782 2.3668 33 1 1.1795 -8.5346 -0.3817 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094231.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:29 Heat of formation + Delta-G solvation = -18.595109 kcal Electronic energy + Delta-G solvation = -16740.090451 eV Core-core repulsion = 14085.037822 eV Total energy + Delta-G solvation = -2655.052629 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.91020 -38.86418 -37.07669 -34.89975 -32.14055 -31.32943 -28.87956 -27.84862 -27.29260 -24.58058 -23.37098 -21.13218 -19.26492 -18.98215 -18.36258 -17.22861 -16.66831 -16.41649 -16.27293 -15.50581 -14.80375 -14.51932 -14.44177 -14.12336 -14.06675 -13.70950 -13.53817 -13.18361 -12.98828 -12.92388 -12.70396 -12.64955 -12.38020 -12.21426 -12.13661 -11.33898 -11.20989 -10.73074 -10.50497 -9.79753 -9.48192 -9.11766 -8.15511 -6.32547 -0.36479 0.61097 1.11350 1.41367 1.43341 1.50153 1.53468 2.23820 2.28796 2.46800 3.12323 3.71135 4.05492 4.17962 4.32504 4.47065 4.51956 4.67616 4.70564 4.78746 4.85854 4.91587 5.01807 5.08193 5.13966 5.39569 5.46035 5.57799 5.60386 5.67619 6.00515 6.13351 6.70582 6.74559 7.25243 7.42218 8.89005 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.032421 B = 0.006285 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.421067 B = 4454.104563 C = 4754.623837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.034 4.034 3 C -0.159 4.159 4 C -0.246 4.246 5 S 0.258 5.742 6 C -0.313 4.313 7 C 0.565 3.435 8 O -0.587 6.587 9 N -0.596 5.596 10 C 0.071 3.929 11 C 0.263 3.737 12 H 0.012 0.988 13 C -0.134 4.134 14 C -0.540 4.540 15 H 0.060 0.940 16 C 0.016 3.984 17 N -0.917 5.917 18 Si 0.966 3.034 19 H -0.265 1.265 20 H -0.285 1.285 21 H -0.272 1.272 22 H 0.073 0.927 23 H 0.091 0.909 24 H 0.060 0.940 25 H 0.165 0.835 26 H 0.199 0.801 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.020 0.980 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.237 15.958 1.893 18.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.050 4.050 3 C -0.189 4.189 4 C -0.383 4.383 5 S 0.527 5.473 6 C -0.433 4.433 7 C 0.355 3.645 8 O -0.471 6.471 9 N -0.325 5.325 10 C -0.073 4.073 11 C 0.162 3.838 12 H 0.030 0.970 13 C -0.192 4.192 14 C -0.579 4.579 15 H 0.078 0.922 16 C -0.183 4.183 17 N -0.555 5.555 18 Si 0.791 3.209 19 H -0.190 1.190 20 H -0.211 1.211 21 H -0.197 1.197 22 H 0.091 0.909 23 H 0.109 0.891 24 H 0.079 0.921 25 H 0.183 0.817 26 H 0.216 0.784 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.039 0.961 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.961 14.867 1.844 17.457 hybrid contribution -1.419 -0.046 -0.601 1.542 sum 7.542 14.822 1.243 16.676 Atomic orbital electron populations 1.20705 0.89378 1.03570 1.02810 1.19805 0.98044 0.91253 0.95930 1.20014 0.92935 0.99290 1.06611 1.26284 1.01046 1.05238 1.05748 1.83291 1.01194 0.95898 1.66889 1.24468 1.00009 0.96210 1.22566 1.17625 0.85783 0.84304 0.76828 1.90669 1.17152 1.85782 1.53514 1.48109 1.08303 1.07196 1.68931 1.22010 0.80433 1.02307 1.02596 1.18611 0.93999 0.76599 0.94605 0.97004 1.21903 1.00045 1.01942 0.95313 1.21549 1.25277 0.96045 1.15012 0.92176 1.25733 0.95350 0.98663 0.98585 1.70017 1.32807 1.13614 1.39089 0.85434 0.78391 0.78027 0.79025 1.18995 1.21096 1.19714 0.90855 0.89063 0.92074 0.81749 0.78392 0.91357 0.89756 0.88660 0.93034 0.91041 0.96131 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.21 9.67 71.24 0.69 -2.52 16 2 C -0.03 -1.05 5.90 -20.42 -0.12 -1.17 16 3 C -0.16 -3.54 9.97 21.08 0.21 -3.33 16 4 C -0.25 -4.73 10.92 66.81 0.73 -4.00 16 5 S 0.26 6.18 17.92 -56.49 -1.01 5.17 16 6 C -0.31 -10.99 6.24 24.08 0.15 -10.84 16 7 C 0.56 25.87 7.62 86.42 0.66 26.53 16 8 O -0.59 -31.53 13.57 -4.34 -0.06 -31.59 16 9 N -0.60 -26.86 2.75 -831.63 -2.29 -29.15 16 10 C 0.07 2.38 8.14 127.77 1.04 3.42 16 11 C 0.26 14.09 2.62 44.24 0.12 14.21 16 12 H 0.01 0.76 6.90 -2.39 -0.02 0.75 16 13 C -0.13 -6.53 8.96 71.98 0.64 -5.88 16 14 C -0.54 -29.83 8.37 25.60 0.21 -29.62 16 15 H 0.06 3.23 7.65 -2.91 -0.02 3.21 16 16 C 0.02 0.91 5.30 84.65 0.45 1.35 16 17 N -0.92 -53.08 11.32 21.45 0.24 -52.84 16 18 Si 0.97 43.23 29.54 68.60 2.03 45.26 16 19 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 20 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 23 H 0.09 2.09 8.14 -2.39 -0.02 2.08 16 24 H 0.06 2.34 5.85 -2.39 -0.01 2.33 16 25 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 26 H 0.20 2.27 8.06 -2.91 -0.02 2.24 16 27 H 0.07 2.14 7.81 -2.39 -0.02 2.12 16 28 H 0.09 2.34 4.53 -20.97 -0.09 2.25 16 29 H 0.09 3.12 6.45 -2.39 -0.02 3.10 16 30 H 0.05 2.25 6.67 -2.39 -0.02 2.23 16 31 H 0.07 3.85 6.07 -2.38 -0.01 3.84 16 32 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -69.95 280.91 4.72 -65.23 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 1.03 Total: 9.77 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 4.78 Total: -11.85 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -2.05 Total: -81.99 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.06 Total: -31.59 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 6.18 SS G_CDS: -1.01 Total: 5.17 kcal Total: -69.95 4.72 -65.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094231.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.636 kcal (2) G-P(sol) polarization free energy of solvation -69.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds