Wall clock time and date at job start Sun Mar 29 2020 23:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47247 * 2 1 4 4 C 1.37474 * 123.35211 * 265.02765 * 3 2 1 5 5 C 1.33813 * 115.09842 * 179.97438 * 4 3 2 6 6 S 1.70612 * 110.95944 * 359.97438 * 5 4 3 7 7 C 1.36646 * 123.34992 * 84.72511 * 3 2 1 8 8 C 1.46582 * 125.46091 * 0.02562 * 7 3 2 9 9 O 1.21700 * 119.99804 * 350.43449 * 8 7 3 10 10 N 1.34772 * 120.00245 * 170.44112 * 8 7 3 11 11 C 1.46506 * 120.00243 * 0.31114 * 10 8 7 12 12 C 1.46500 * 120.00431 * 180.31379 * 10 8 7 13 13 C 1.50700 * 109.47375 * 89.99647 * 12 10 8 14 14 H 1.07999 * 119.99950 * 0.02562 * 13 12 10 15 15 C 1.37875 * 120.00360 * 180.02562 * 13 12 10 16 16 N 1.31512 * 120.00305 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99764 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47362 * 89.99936 * 17 15 13 19 19 H 1.48505 * 109.47155 * 210.00276 * 17 15 13 20 20 H 1.48503 * 109.47263 * 330.00053 * 17 15 13 21 21 H 1.08999 * 109.46888 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.46835 * 300.00074 * 1 2 3 23 23 H 1.08997 * 109.46970 * 60.00118 * 1 2 3 24 24 H 1.08997 * 109.46970 * 119.99882 * 2 1 3 25 25 H 1.08995 * 109.47022 * 240.00193 * 2 1 3 26 26 H 1.07991 * 122.44886 * 359.93890 * 4 3 2 27 27 H 1.08008 * 124.52073 * 179.97438 * 5 4 3 28 28 H 1.09004 * 109.47186 * 83.48076 * 11 10 8 29 29 H 1.08994 * 109.47614 * 203.48822 * 11 10 8 30 30 H 1.09004 * 109.46581 * 323.48492 * 11 10 8 31 31 H 1.08999 * 109.47405 * 210.00134 * 12 10 8 32 32 H 1.09007 * 109.47033 * 329.99597 * 12 10 8 33 33 H 0.96995 * 120.00264 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3782 2.1002 -1.1440 5 6 2.8034 3.3545 -0.9527 6 16 2.7913 3.7567 0.7053 7 6 2.1839 2.1640 1.1366 8 6 1.8893 1.7062 2.4976 9 8 1.3124 0.6490 2.6724 10 7 2.2573 2.4561 3.5553 11 6 2.9456 3.7321 3.3447 12 6 1.9690 1.9953 4.9157 13 6 3.1228 1.1679 5.4210 14 1 3.9848 1.0022 4.7918 15 6 3.0779 0.6223 6.6864 16 7 4.0850 -0.0993 7.1275 17 14 1.5873 0.9095 7.7750 18 1 0.5914 -0.1678 7.5449 19 1 2.0057 0.9008 9.1998 20 1 0.9796 2.2238 7.4456 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 2.3120 1.6541 -2.1252 27 1 3.1130 4.0230 -1.7425 28 1 2.2110 4.5133 3.1492 29 1 3.5189 3.9872 4.2359 30 1 3.6192 3.6451 2.4920 31 1 1.8261 2.8564 5.5685 32 1 1.0627 1.3896 4.9098 33 1 4.0537 -0.4827 8.0179 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064762223.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:36 Heat of formation + Delta-G solvation = -1.227140 kcal Electronic energy + Delta-G solvation = -16656.079834 eV Core-core repulsion = 14001.780337 eV Total energy + Delta-G solvation = -2654.299497 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.41871 -37.70550 -34.96316 -32.60149 -32.48579 -29.80240 -28.02188 -26.24982 -24.93276 -22.63538 -22.11125 -19.97037 -18.02077 -17.46907 -16.96969 -15.54933 -15.47649 -14.91777 -14.70639 -13.93989 -13.85318 -13.45135 -12.97721 -12.80982 -12.67107 -12.44783 -12.26716 -12.03230 -11.67867 -11.60063 -11.06657 -11.03012 -10.57762 -10.54679 -10.25741 -10.17827 -9.56789 -9.12488 -8.60345 -8.57822 -8.27842 -7.70378 -6.09863 -4.09248 0.79183 1.72038 2.13380 2.62897 3.28405 3.34271 3.36269 3.66977 3.87813 4.38310 4.95869 5.01550 5.23578 5.34041 5.35322 5.43971 5.58343 5.67187 5.72389 5.90837 5.96910 6.04253 6.19565 6.27838 6.49173 6.60524 6.65837 6.76553 6.92376 7.25466 7.57817 8.14031 8.44617 8.86769 8.94820 9.49689 11.03458 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.028503 B = 0.006681 C = 0.005924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.100858 B = 4189.824799 C = 4725.016108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.067 4.067 3 C -0.032 4.032 4 C -0.144 4.144 5 C -0.271 4.271 6 S 0.212 5.788 7 C -0.253 4.253 8 C 0.578 3.422 9 O -0.521 6.521 10 N -0.592 5.592 11 C 0.069 3.931 12 C 0.218 3.782 13 C -0.531 4.531 14 H 0.075 0.925 15 C 0.073 3.927 16 N -0.896 5.896 17 Si 0.876 3.124 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.266 1.266 21 H 0.055 0.945 22 H 0.064 0.936 23 H 0.044 0.956 24 H 0.093 0.907 25 H 0.063 0.937 26 H 0.134 0.866 27 H 0.159 0.841 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.032 0.968 32 H 0.040 0.960 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.787 8.836 -14.626 17.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 C -0.046 4.046 4 C -0.175 4.175 5 C -0.408 4.408 6 S 0.481 5.519 7 C -0.373 4.373 8 C 0.365 3.635 9 O -0.399 6.399 10 N -0.323 5.323 11 C -0.077 4.077 12 C 0.098 3.902 13 C -0.569 4.569 14 H 0.093 0.907 15 C -0.129 4.129 16 N -0.535 5.535 17 Si 0.703 3.297 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.190 1.190 21 H 0.074 0.926 22 H 0.083 0.917 23 H 0.063 0.937 24 H 0.111 0.889 25 H 0.082 0.918 26 H 0.152 0.848 27 H 0.176 0.824 28 H 0.073 0.927 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.630 9.525 -13.558 16.962 hybrid contribution -0.769 -1.036 -0.407 1.352 sum -4.399 8.489 -13.964 16.924 Atomic orbital electron populations 1.21599 0.94498 1.01508 1.01670 1.20327 0.96452 0.90727 1.03168 1.19452 0.97150 0.97444 0.90591 1.19815 1.04140 0.94349 0.99197 1.25748 1.08497 1.01629 1.04889 1.83551 1.59972 1.12833 0.95524 1.24732 1.15302 0.99010 0.98248 1.16887 0.80002 0.84269 0.82366 1.90768 1.42305 1.21840 1.85027 1.47702 1.56773 1.20122 1.07737 1.21879 0.97204 0.86033 1.02542 1.19719 0.98050 0.95490 0.76974 1.21323 1.03513 1.31616 1.00482 0.90689 1.24849 0.96027 0.94439 0.97606 1.69893 1.31016 1.34015 1.18533 0.86855 0.83484 0.79418 0.79963 1.19839 1.21031 1.19040 0.92642 0.91699 0.93728 0.88900 0.91814 0.84775 0.82381 0.92661 0.88772 0.91593 0.94967 0.94213 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.72 37.16 0.36 -1.59 16 2 C -0.07 -1.04 5.47 -27.88 -0.15 -1.20 16 3 C -0.03 -0.50 5.16 -105.48 -0.54 -1.04 16 4 C -0.14 -1.86 9.96 -41.41 -0.41 -2.27 16 5 C -0.27 -3.18 10.92 29.18 0.32 -2.86 16 6 S 0.21 2.73 17.92 -107.50 -1.93 0.80 16 7 C -0.25 -4.39 6.22 -36.79 -0.23 -4.62 16 8 C 0.58 12.39 7.60 -12.90 -0.10 12.30 16 9 O -0.52 -12.71 13.03 5.19 0.07 -12.64 16 10 N -0.59 -12.55 2.86 -184.54 -0.53 -13.07 16 11 C 0.07 1.11 8.92 59.85 0.53 1.64 16 12 C 0.22 5.33 4.20 -5.19 -0.02 5.31 16 13 C -0.53 -15.26 9.94 -34.44 -0.34 -15.60 16 14 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 15 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 16 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 17 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 18 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 21 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.06 1.10 7.17 -51.92 -0.37 0.72 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.09 1.72 6.61 -51.93 -0.34 1.38 16 25 H 0.06 0.82 8.12 -51.93 -0.42 0.39 16 26 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 27 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 28 H 0.06 0.73 7.76 -51.93 -0.40 0.32 16 29 H 0.09 1.48 8.02 -51.93 -0.42 1.06 16 30 H 0.07 0.97 4.64 -23.48 -0.11 0.86 16 31 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 32 H 0.04 1.03 6.84 -51.93 -0.36 0.67 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 284.62 15.07 4.29 4.29 Total: -1.00 -32.89 284.62 -6.75 -39.64 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -4.07 Total: -1.04 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -0.68 Total: -7.90 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.25 Total: -39.90 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.07 Total: -12.64 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.93 Total: 0.80 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.89 -6.75 -39.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064762223.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.413 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds