Wall clock time and date at job start Sun Mar 29 2020 23:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40582 * 127.38759 * 2 1 4 4 N 1.28905 * 106.83796 * 180.02562 * 3 2 1 5 5 N 1.28425 * 110.33848 * 359.72524 * 4 3 2 6 6 C 1.31544 * 110.49851 * 0.45932 * 5 4 3 7 7 S 1.76204 * 126.45114 * 179.82030 * 6 5 4 8 8 C 1.80995 * 99.99915 * 359.68575 * 7 6 5 9 9 C 1.52997 * 109.47293 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.46881 * 54.99844 * 9 8 7 11 11 C 1.47201 * 109.47013 * 295.00681 * 9 8 7 12 12 N 6.27289 * 95.90773 * 159.09925 * 2 1 3 13 13 C 1.52997 * 109.47504 * 175.00205 * 9 8 7 14 14 C 1.50701 * 109.47212 * 184.99949 * 13 9 8 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 9 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 9 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 H 1.08999 * 109.47000 * 269.95757 * 1 2 3 23 23 H 1.08998 * 109.47184 * 29.95917 * 1 2 3 24 24 H 1.08999 * 109.47408 * 149.95522 * 1 2 3 25 25 H 1.09003 * 109.46951 * 60.00483 * 8 7 6 26 26 H 1.08998 * 109.47323 * 300.00481 * 8 7 6 27 27 H 1.09002 * 109.47153 * 64.99951 * 13 9 8 28 28 H 1.09001 * 109.46832 * 305.00142 * 13 9 8 29 29 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3186 1.1170 0.0000 4 7 3.5257 0.6645 -0.0006 5 7 3.5209 -0.6197 0.0049 6 6 2.2871 -1.0759 -0.0006 7 16 1.7966 -2.7683 -0.0007 8 6 3.4212 -3.5663 -0.0015 9 6 3.2430 -5.0858 -0.0025 10 1 2.6150 -5.3775 -0.8444 11 6 2.6034 -5.5056 1.2551 12 7 2.1107 -5.8290 2.2260 13 6 4.6107 -5.7597 -0.1288 14 6 4.4267 -7.2503 -0.2532 15 1 3.4336 -7.6745 -0.2435 16 6 5.5263 -8.0724 -0.3803 17 7 5.3657 -9.3731 -0.4894 18 14 7.2440 -7.3385 -0.3977 19 1 7.7668 -7.2693 0.9906 20 1 8.1383 -8.1914 -1.2212 21 1 7.1927 -5.9718 -0.9761 22 1 -0.3633 -0.0008 1.0277 23 1 -0.3633 0.8903 -0.5132 24 1 -0.3634 -0.8896 -0.5145 25 1 3.9741 -3.2655 0.8884 26 1 3.9735 -3.2650 -0.8916 27 1 5.2072 -5.5399 0.7566 28 1 5.1217 -5.3815 -1.0142 29 1 6.1393 -9.9515 -0.5785 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066237414.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:25 Heat of formation + Delta-G solvation = 113.636755 kcal Electronic energy + Delta-G solvation = -15354.547464 eV Core-core repulsion = 12633.981247 eV Total energy + Delta-G solvation = -2720.566217 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 253.069 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.98291 -38.50946 -36.21781 -35.77345 -34.23276 -33.37210 -30.14906 -29.23067 -25.98938 -24.48601 -24.13292 -23.32746 -19.43018 -18.83911 -18.38048 -17.85813 -17.77011 -16.75716 -15.84174 -15.46210 -15.21590 -14.70404 -14.68901 -14.42387 -14.31379 -13.88057 -13.71154 -13.32195 -13.19625 -13.09217 -12.75120 -12.41325 -12.16262 -12.05357 -11.87136 -11.72163 -11.53370 -11.49105 -11.36089 -10.71731 -9.10010 -8.22976 -6.28537 -0.41407 -0.25528 0.72037 1.02308 1.13771 1.46532 1.48299 1.57794 1.87201 1.90423 2.42698 3.01403 3.15484 3.16898 3.66491 3.75134 4.08434 4.12831 4.24293 4.41628 4.49258 4.58016 4.61370 4.80355 4.98833 5.23315 5.38965 5.63803 6.25303 6.68378 6.80734 7.22836 7.36191 8.93256 Molecular weight = 253.07amu Principal moments of inertia in cm(-1) A = 0.033253 B = 0.004989 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.837782 B = 5610.721278 C = 6208.750967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.357 5.357 3 N -0.098 5.098 4 N -0.059 5.059 5 N -0.355 5.355 6 C 0.209 3.791 7 S 0.072 5.928 8 C -0.105 4.105 9 C 0.041 3.959 10 H 0.139 0.861 11 C 0.239 3.761 12 N -0.485 5.485 13 C -0.001 4.001 14 C -0.529 4.529 15 H 0.037 0.963 16 C 0.007 3.993 17 N -0.951 5.951 18 Si 0.939 3.061 19 H -0.279 1.279 20 H -0.292 1.292 21 H -0.222 1.222 22 H 0.112 0.888 23 H 0.126 0.874 24 H 0.122 0.878 25 H 0.109 0.891 26 H 0.143 0.857 27 H 0.030 0.970 28 H 0.071 0.929 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.462 18.852 -2.734 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.157 5.157 3 N -0.086 5.086 4 N -0.055 5.055 5 N -0.212 5.212 6 C -0.175 4.175 7 S 0.299 5.701 8 C -0.255 4.255 9 C 0.018 3.982 10 H 0.157 0.843 11 C -0.078 4.078 12 N -0.161 5.161 13 C -0.042 4.042 14 C -0.567 4.567 15 H 0.055 0.945 16 C -0.190 4.190 17 N -0.592 5.592 18 Si 0.763 3.237 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.144 1.144 22 H 0.130 0.870 23 H 0.144 0.856 24 H 0.140 0.860 25 H 0.127 0.873 26 H 0.161 0.839 27 H 0.049 0.951 28 H 0.090 0.910 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.312 18.839 -1.286 21.515 hybrid contribution 1.354 -0.339 -0.145 1.404 sum -8.958 18.500 -1.431 20.604 Atomic orbital electron populations 1.22815 0.68841 1.08165 1.07057 1.51781 1.11146 1.02119 1.50671 1.82353 0.95092 1.08468 1.22653 1.77839 1.13634 1.03343 1.10697 1.74882 1.18070 1.03262 1.25020 1.28024 0.89691 0.99206 1.00612 1.85892 1.11247 0.82787 1.90222 1.23944 0.96271 0.94673 1.10583 1.18755 0.99014 0.91542 0.88909 0.84341 1.29399 0.91972 0.91823 0.94589 1.81059 1.11895 1.09979 1.13206 1.19654 0.91300 0.93502 0.99697 1.21339 0.93644 0.91787 1.49949 0.94464 1.25935 1.03974 0.94888 0.94178 1.70066 1.32033 1.05151 1.51929 0.85826 0.78691 0.80764 0.78455 1.20444 1.21809 1.14389 0.86978 0.85612 0.85983 0.87264 0.83890 0.95134 0.91049 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 11.40 127.77 1.46 2.01 15 2 N -0.36 -6.95 4.09 -369.36 -1.51 -8.46 15 3 N -0.10 -2.50 13.93 37.02 0.52 -1.98 15 4 N -0.06 -1.76 13.38 37.02 0.50 -1.26 15 5 N -0.35 -9.96 11.57 -57.40 -0.66 -10.62 15 6 C 0.21 4.70 8.15 179.84 1.47 6.16 15 7 S 0.07 1.36 21.19 -56.49 -1.20 0.16 15 8 C -0.10 -2.30 4.65 71.98 0.33 -1.96 15 9 C 0.04 1.19 2.21 -12.60 -0.03 1.16 15 10 H 0.14 3.51 8.14 -2.39 -0.02 3.50 15 11 C 0.24 8.45 13.30 89.45 1.19 9.64 15 12 N -0.48 -19.45 18.54 20.00 0.37 -19.07 15 13 C 0.00 -0.05 3.49 29.85 0.10 0.06 15 14 C -0.53 -26.71 9.15 25.60 0.23 -26.48 15 15 H 0.04 2.11 7.84 -2.91 -0.02 2.09 15 16 C 0.01 0.40 5.47 84.66 0.46 0.87 15 17 N -0.95 -57.01 13.96 21.45 0.30 -56.71 15 18 Si 0.94 40.16 27.47 68.60 1.88 42.05 15 19 H -0.28 -11.98 7.11 99.48 0.71 -11.27 15 20 H -0.29 -12.69 7.11 99.48 0.71 -11.98 15 21 H -0.22 -8.04 6.54 99.48 0.65 -7.39 15 22 H 0.11 0.55 8.14 -2.39 -0.02 0.53 15 23 H 0.13 0.51 8.14 -2.39 -0.02 0.49 15 24 H 0.12 0.53 7.85 -2.39 -0.02 0.51 15 25 H 0.11 2.48 8.14 -2.39 -0.02 2.46 15 26 H 0.14 2.65 8.14 -2.40 -0.02 2.63 15 27 H 0.03 1.12 7.57 -2.39 -0.02 1.10 15 28 H 0.07 2.32 7.20 -2.39 -0.02 2.31 15 29 H 0.26 14.95 8.31 -92.71 -0.77 14.18 15 Total: -1.00 -71.83 282.18 6.53 -65.30 By element: Atomic # 1 Polarization: -1.96 SS G_CDS: 1.12 Total: -0.84 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 5.22 Total: -8.55 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -0.49 Total: -98.11 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 1.88 Total: 42.05 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -1.20 Total: 0.16 kcal Total: -71.83 6.53 -65.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066237414.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.933 kcal (2) G-P(sol) polarization free energy of solvation -71.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds