Wall clock time and date at job start Sun Mar 29 2020 23:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33820 * 124.52170 * 2 1 4 4 C 1.37477 * 115.09995 * 179.97438 * 3 2 1 5 5 C 1.36653 * 113.29731 * 359.97438 * 4 3 2 6 6 C 1.46575 * 125.45735 * 180.26523 * 5 4 3 7 7 O 1.21697 * 120.00168 * 359.72040 * 6 5 4 8 8 N 1.34778 * 119.99949 * 179.71779 * 6 5 4 9 9 C 1.46497 * 120.00222 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47491 * 180.02562 * 9 8 6 11 11 C 1.52994 * 109.47325 * 180.02562 * 10 9 8 12 12 C 1.50708 * 109.47209 * 180.02562 * 11 10 9 13 13 H 1.07994 * 119.99535 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99990 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00119 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99994 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46963 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47050 * 120.00096 * 16 14 12 19 19 H 1.48500 * 109.46842 * 240.00272 * 16 14 12 20 20 S 1.70614 * 124.52091 * 179.97438 * 2 1 3 21 21 H 1.09000 * 109.47165 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47144 * 300.02247 * 1 2 3 23 23 H 1.09002 * 109.46816 * 60.01466 * 1 2 3 24 24 H 1.07995 * 122.45037 * 359.93942 * 3 2 1 25 25 H 1.07990 * 123.35307 * 179.97438 * 4 3 2 26 26 H 0.97005 * 120.00165 * 0.02562 * 8 6 5 27 27 H 1.09004 * 109.47224 * 300.00200 * 9 8 6 28 28 H 1.09006 * 109.47235 * 60.00336 * 9 8 6 29 29 H 1.09004 * 109.47012 * 300.00283 * 10 9 8 30 30 H 1.08998 * 109.47249 * 59.99927 * 10 9 8 31 31 H 1.09004 * 109.47094 * 299.99972 * 11 10 9 32 32 H 1.08998 * 109.47686 * 59.99931 * 11 10 9 33 33 H 0.97004 * 120.00184 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1026 0.0000 4 6 3.6216 0.8775 0.0006 5 6 3.9493 -0.4491 0.0016 6 6 5.3123 -0.9883 0.0079 7 8 6.2658 -0.2321 0.0076 8 7 5.5096 -2.3215 0.0140 9 6 6.8718 -2.8605 0.0198 10 6 6.8155 -4.3894 0.0254 11 6 8.2381 -4.9522 0.0321 12 6 8.1826 -6.4582 0.0370 13 1 7.2281 -6.9633 0.0360 14 6 9.3504 -7.1911 0.0429 15 7 10.5128 -6.5760 0.0446 16 14 9.2816 -9.0579 0.0497 17 1 7.8642 -9.5009 0.0471 18 1 9.9661 -9.5829 -1.1590 19 1 9.9597 -9.5737 1.2660 20 16 2.4739 -1.4057 0.0006 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5142 0.8898 23 1 -0.3633 0.5136 -0.8901 24 1 1.8430 2.0964 -0.0010 25 1 4.3550 1.6702 0.0002 26 1 4.7496 -2.9243 0.0139 27 1 7.4010 -2.5201 -0.8703 28 1 7.3965 -2.5126 0.9097 29 1 6.2862 -4.7302 0.9153 30 1 6.2910 -4.7370 -0.8646 31 1 8.7678 -4.6114 -0.8576 32 1 8.7623 -4.6047 0.9223 33 1 11.3345 -7.0916 0.0491 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940602.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:23 Heat of formation + Delta-G solvation = -29.756480 kcal Electronic energy + Delta-G solvation = -15281.884101 eV Core-core repulsion = 12626.347479 eV Total energy + Delta-G solvation = -2655.536622 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.61311 -37.91096 -35.41101 -33.35223 -32.34054 -31.19129 -27.97844 -26.31122 -23.92408 -23.04151 -21.18358 -20.64787 -19.12091 -17.90212 -16.54485 -16.10869 -15.50655 -15.39993 -14.73753 -14.43652 -14.41720 -13.80603 -13.68318 -13.29144 -12.63116 -12.33162 -12.30142 -12.06926 -11.83579 -11.70668 -11.13887 -10.92665 -10.75433 -10.57877 -10.06190 -9.88549 -9.43400 -9.11617 -8.99789 -8.81481 -8.69865 -8.37903 -6.02257 -4.05362 0.33884 1.24989 1.66071 2.22566 3.26558 3.29898 3.30964 3.37557 3.41295 4.44058 4.46297 4.82410 4.87399 5.10285 5.12046 5.33600 5.33661 5.54611 5.65128 5.75652 5.79079 5.97506 6.13963 6.16035 6.40879 6.57802 6.79561 6.98069 7.60720 7.63229 7.75251 7.96461 8.26811 8.37826 9.01484 9.58965 11.09084 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.043137 B = 0.003465 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.935159 B = 8078.930710 C = 8696.808725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.200 4.200 3 C -0.157 4.157 4 C -0.056 4.056 5 C -0.262 4.262 6 C 0.583 3.417 7 O -0.533 6.533 8 N -0.721 5.721 9 C 0.117 3.883 10 C -0.122 4.122 11 C 0.024 3.976 12 C -0.522 4.522 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 S 0.201 5.799 21 H 0.068 0.932 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.143 0.857 25 H 0.153 0.847 26 H 0.395 0.605 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.624 12.886 -0.094 24.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.320 4.320 3 C -0.188 4.188 4 C -0.089 4.089 5 C -0.383 4.383 6 C 0.369 3.631 7 O -0.412 6.412 8 N -0.371 5.371 9 C -0.006 4.006 10 C -0.160 4.160 11 C -0.014 4.014 12 C -0.560 4.560 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 S 0.469 5.531 21 H 0.088 0.912 22 H 0.097 0.903 23 H 0.097 0.903 24 H 0.161 0.839 25 H 0.170 0.830 26 H 0.229 0.771 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.035 11.807 -0.093 23.255 hybrid contribution -0.003 0.278 0.003 0.278 sum -20.038 12.085 -0.090 23.400 Atomic orbital electron populations 1.20380 0.87450 1.03164 1.03289 1.24249 1.01513 0.97888 1.08341 1.19930 0.92645 0.99584 1.06613 1.20753 0.96135 0.95255 0.96755 1.24717 0.97050 0.98082 1.18438 1.16987 0.86591 0.82640 0.76914 1.90826 1.41798 1.58109 1.50452 1.46114 1.10562 1.05853 1.74597 1.21718 0.80814 0.95695 1.02329 1.21909 1.02517 0.90563 1.00989 1.19036 0.89100 0.95535 0.97730 1.21238 0.92434 0.91517 1.50825 0.92563 1.25033 0.95537 0.98649 0.95275 1.69978 0.97269 1.35386 1.50640 0.86524 0.78080 0.85714 0.77602 1.19740 1.20999 1.20994 1.83055 0.94380 1.07592 1.68112 0.91249 0.90286 0.90288 0.83914 0.82968 0.77093 0.91414 0.91404 0.92636 0.92631 0.96204 0.96199 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.33 36.01 0.37 -0.11 16 2 C -0.20 -1.75 6.28 -35.86 -0.23 -1.97 16 3 C -0.16 -1.45 10.00 -41.41 -0.41 -1.87 16 4 C -0.06 -0.65 10.01 -40.43 -0.40 -1.06 16 5 C -0.26 -3.43 6.45 -36.79 -0.24 -3.66 16 6 C 0.58 9.51 7.78 -12.90 -0.10 9.41 16 7 O -0.53 -10.56 16.84 5.19 0.09 -10.48 16 8 N -0.72 -11.16 5.55 -61.65 -0.34 -11.50 16 9 C 0.12 2.11 5.67 -4.04 -0.02 2.08 16 10 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 11 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 12 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 16 Si 0.89 21.49 29.54 -169.99 -5.02 16.46 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 S 0.20 1.98 22.08 -107.50 -2.37 -0.40 16 21 H 0.07 0.35 8.11 -51.93 -0.42 -0.08 16 22 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 25 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 26 H 0.40 5.13 7.59 -40.82 -0.31 4.82 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 302.95 15.07 4.57 4.57 Total: -1.00 -32.43 302.95 -8.57 -41.00 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -4.50 Total: -0.90 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -1.72 Total: -12.64 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.39 Total: -37.62 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.37 Total: -0.40 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.43 -8.57 -41.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940602.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.244 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds