Wall clock time and date at job start Sun Mar 29 2020 23:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00077 * 2 1 4 4 H 1.48498 * 109.47396 * 270.00500 * 3 2 1 5 5 H 1.48499 * 109.47189 * 30.00553 * 3 2 1 6 6 H 1.48498 * 109.46858 * 150.00286 * 3 2 1 7 7 C 1.37877 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99778 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00127 * 179.97438 * 7 2 1 10 10 S 1.81404 * 109.47374 * 180.02562 * 9 7 2 11 11 C 1.76199 * 103.00309 * 180.02562 * 10 9 7 12 12 C 1.38725 * 120.10007 * 0.27662 * 11 10 9 13 13 C 1.38249 * 119.99224 * 180.27537 * 12 11 10 14 14 C 1.38265 * 120.19511 * 359.72435 * 13 12 11 15 15 C 1.38289 * 120.20824 * 359.97438 * 14 13 12 16 16 C 1.38647 * 120.00033 * 0.02562 * 15 14 13 17 17 N 1.40006 * 120.09571 * 179.97438 * 16 15 14 18 18 C 1.46496 * 120.00019 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.47070 * 179.97438 * 18 17 16 20 20 O 1.42906 * 109.46752 * 64.99887 * 19 18 17 21 21 H 0.97003 * 119.99981 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47182 * 60.00356 * 9 7 2 23 23 H 1.08997 * 109.47749 * 300.00353 * 9 7 2 24 24 H 1.08001 * 120.00714 * 0.02562 * 12 11 10 25 25 H 1.07995 * 119.90157 * 179.74559 * 13 12 11 26 26 H 1.08009 * 119.89858 * 180.02562 * 14 13 12 27 27 H 1.07996 * 119.99946 * 180.02562 * 15 14 13 28 28 H 0.97001 * 119.99576 * 180.02562 * 17 16 15 29 29 H 1.09004 * 109.47055 * 60.00563 * 18 17 16 30 30 H 1.08992 * 109.47401 * 299.99871 * 18 17 16 31 31 H 1.08993 * 109.46955 * 185.00306 * 19 18 17 32 32 H 1.09000 * 109.47050 * 305.00134 * 19 18 17 33 33 H 0.96698 * 113.99404 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 16 4.1162 -2.9043 -0.0025 11 6 5.8669 -2.7058 -0.0023 12 6 6.4230 -1.4349 0.0046 13 6 7.7970 -1.2816 -0.0010 14 6 8.6205 -2.3922 -0.0077 15 6 8.0750 -3.6630 -0.0083 16 6 6.6982 -3.8264 -0.0027 17 7 6.1438 -5.1120 -0.0038 18 6 7.0187 -6.2870 -0.0103 19 6 6.1662 -7.5576 -0.0096 20 8 5.4227 -7.6330 -1.2277 21 1 -0.4850 0.8401 0.0004 22 1 3.8751 -0.6805 0.8889 23 1 3.8745 -0.6800 -0.8910 24 1 5.7827 -0.5652 0.0102 25 1 8.2283 -0.2916 0.0002 26 1 9.6933 -2.2670 -0.0116 27 1 8.7214 -4.5281 -0.0131 28 1 5.1803 -5.2246 -0.0003 29 1 7.6513 -6.2739 0.8773 30 1 7.6442 -6.2693 -0.9027 31 1 6.8143 -8.4298 0.0752 32 1 5.4779 -7.5328 0.8353 33 1 4.8583 -8.4151 -1.2960 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085276976.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:32 Heat of formation + Delta-G solvation = -29.469526 kcal Electronic energy + Delta-G solvation = -15799.785622 eV Core-core repulsion = 13144.261443 eV Total energy + Delta-G solvation = -2655.524179 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.07943 -37.34885 -34.98047 -33.10522 -30.86322 -30.42249 -29.25406 -27.34417 -23.49009 -22.80184 -21.88040 -20.89000 -17.88348 -17.61572 -16.78880 -16.28681 -16.05606 -15.01929 -14.52589 -14.18414 -14.00760 -13.78735 -13.44982 -13.23913 -13.07615 -12.89119 -12.47511 -12.27022 -11.62945 -11.42392 -10.98850 -10.85094 -10.38034 -10.29176 -10.17095 -9.90620 -9.68821 -9.16900 -9.10996 -8.72896 -7.52902 -6.38284 -6.22008 -4.25148 1.66482 1.91697 2.44949 3.20405 3.27591 3.28958 3.46775 3.70538 4.01477 4.15268 4.28401 4.80577 4.95803 5.09470 5.09547 5.18310 5.32227 5.47881 5.60192 5.65331 5.78691 5.99377 6.21088 6.46228 6.53123 6.62651 6.65460 6.90044 7.10982 7.37033 7.39270 7.56697 7.95516 8.24520 8.78578 9.33368 10.89816 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.022601 B = 0.006011 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.588422 B = 4657.266483 C = 5816.397222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.082 3.918 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.518 4.518 8 H 0.084 0.916 9 C 0.034 3.966 10 S -0.138 6.138 11 C -0.145 4.145 12 C -0.092 4.092 13 C -0.161 4.161 14 C -0.092 4.092 15 C -0.189 4.189 16 C 0.227 3.773 17 N -0.739 5.739 18 C 0.128 3.872 19 C 0.064 3.936 20 O -0.567 6.567 21 H 0.269 0.731 22 H 0.041 0.959 23 H 0.037 0.963 24 H 0.124 0.876 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.408 0.592 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.008 -11.064 0.856 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.122 4.122 3 Si 0.703 3.297 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.102 0.898 9 C -0.114 4.114 10 S 0.107 5.893 11 C -0.262 4.262 12 C -0.118 4.118 13 C -0.183 4.183 14 C -0.113 4.113 15 C -0.214 4.214 16 C 0.118 3.882 17 N -0.372 5.372 18 C 0.003 3.997 19 C -0.014 4.014 20 O -0.372 6.372 21 H 0.079 0.921 22 H 0.059 0.941 23 H 0.055 0.945 24 H 0.141 0.859 25 H 0.133 0.867 26 H 0.134 0.866 27 H 0.135 0.865 28 H 0.245 0.755 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 15.490 -11.544 0.743 19.333 hybrid contribution 0.504 1.518 0.132 1.605 sum 15.995 -10.026 0.875 18.898 Atomic orbital electron populations 1.69858 1.06148 1.27401 1.49233 1.24827 0.94749 0.98733 0.93942 0.86828 0.80416 0.83541 0.78964 1.19725 1.20690 1.18919 1.20423 0.86659 0.95434 1.53176 0.89780 1.21668 1.01153 0.88951 0.99650 1.85058 0.94134 1.18606 1.91547 1.21582 0.98687 0.94754 1.11145 1.21072 0.95560 0.95544 0.99577 1.20766 0.93047 0.98306 1.06151 1.20757 0.98891 0.92016 0.99663 1.20429 0.92198 0.97643 1.11147 1.17301 0.91569 0.83929 0.95359 1.44647 1.08758 1.01393 1.82360 1.21310 0.93003 0.83938 1.01409 1.22402 0.94714 0.97059 0.87260 1.86586 1.62236 1.49355 1.39025 0.92130 0.94056 0.94507 0.85860 0.86689 0.86647 0.86474 0.75513 0.91182 0.91799 0.92294 0.92813 0.77274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.96 55.43 0.77 -26.01 16 2 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 3 Si 0.88 21.01 27.47 -169.99 -4.67 16.35 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 7 C -0.52 -14.78 9.68 -34.44 -0.33 -15.11 16 8 H 0.08 2.61 7.96 -52.49 -0.42 2.19 16 9 C 0.03 0.82 3.16 36.00 0.11 0.94 16 10 S -0.14 -3.02 20.37 -107.50 -2.19 -5.21 16 11 C -0.14 -2.81 6.12 -38.92 -0.24 -3.05 16 12 C -0.09 -1.70 9.36 -39.40 -0.37 -2.07 16 13 C -0.16 -2.49 10.04 -39.57 -0.40 -2.89 16 14 C -0.09 -1.27 10.04 -39.55 -0.40 -1.67 16 15 C -0.19 -2.75 9.31 -39.41 -0.37 -3.11 16 16 C 0.23 3.83 6.66 -83.49 -0.56 3.28 16 17 N -0.74 -11.13 5.63 -58.45 -0.33 -11.46 16 18 C 0.13 1.41 5.30 -4.04 -0.02 1.38 16 19 C 0.06 0.57 7.18 37.16 0.27 0.84 16 20 O -0.57 -6.06 13.61 -35.23 -0.48 -6.54 16 21 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 22 H 0.04 1.00 6.79 -51.92 -0.35 0.65 16 23 H 0.04 0.89 7.19 -51.93 -0.37 0.51 16 24 H 0.12 2.35 5.88 -52.49 -0.31 2.04 16 25 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 26 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 27 H 0.12 1.38 6.74 -52.49 -0.35 1.03 16 28 H 0.41 6.64 7.02 -40.82 -0.29 6.36 16 29 H 0.07 0.65 7.95 -51.93 -0.41 0.23 16 30 H 0.06 0.71 7.95 -51.93 -0.41 0.30 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.38 2.28 9.12 45.56 0.42 2.69 16 LS Contribution 291.42 15.07 4.39 4.39 Total: -1.00 -32.30 291.42 -8.26 -40.56 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -3.36 Total: 7.13 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -2.40 Total: -19.21 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.44 Total: -37.47 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.48 Total: -6.54 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.35 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -2.19 Total: -5.21 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.30 -8.26 -40.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085276976.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.091 kcal (2) G-P(sol) polarization free energy of solvation -32.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds