Wall clock time and date at job start Sun Mar 29 2020 23:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38267 * 119.94843 * 2 1 4 4 C 1.38250 * 120.12767 * 179.97438 * 3 2 1 5 5 C 1.38338 * 120.03013 * 0.04595 * 4 3 2 6 6 F 1.35100 * 120.04992 * 180.25798 * 5 4 3 7 7 C 1.38915 * 119.89989 * 359.97437 * 5 4 3 8 8 O 1.35958 * 120.05920 * 180.02562 * 7 5 4 9 9 C 1.42893 * 116.99849 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47063 * 180.02562 * 9 8 7 11 11 O 1.21291 * 120.00138 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00063 * 180.02562 * 10 9 8 13 13 C 1.37098 * 120.00162 * 179.97438 * 12 10 9 14 14 H 1.08007 * 120.00278 * 0.02562 * 13 12 10 15 15 C 1.38948 * 120.00343 * 179.97438 * 13 12 10 16 16 N 1.31410 * 119.99896 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00350 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47284 * 90.00306 * 17 15 13 19 19 H 1.48495 * 109.47412 * 210.00392 * 17 15 13 20 20 H 1.48502 * 109.47296 * 330.00454 * 17 15 13 21 21 C 1.38177 * 119.95723 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.47192 * 269.97286 * 1 2 3 23 23 H 1.08999 * 109.47384 * 29.97991 * 1 2 3 24 24 H 1.09004 * 109.46808 * 149.97741 * 1 2 3 25 25 H 1.08000 * 119.93535 * 359.97438 * 3 2 1 26 26 H 1.08000 * 119.99054 * 180.02562 * 4 3 2 27 27 H 1.08997 * 109.47429 * 300.00272 * 9 8 7 28 28 H 1.09004 * 109.47080 * 60.00777 * 9 8 7 29 29 H 0.97000 * 119.99934 * 0.02562 * 12 10 9 30 30 H 0.97001 * 120.00043 * 180.02562 * 16 15 13 31 31 H 1.08005 * 120.01400 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1981 0.0000 4 6 3.5798 1.2024 0.0005 5 6 4.2758 0.0069 0.0001 6 9 5.6268 0.0106 0.0059 7 6 3.5836 -1.1975 -0.0003 8 8 4.2644 -2.3743 -0.0002 9 6 3.4871 -3.5734 -0.0012 10 6 4.4062 -4.7677 -0.0003 11 8 5.6085 -4.6078 0.0016 12 7 3.8921 -6.0136 -0.0016 13 6 4.7281 -7.1001 -0.0013 14 1 5.7988 -6.9578 0.0004 15 6 4.1982 -8.3846 -0.0020 16 7 2.8956 -8.5579 -0.0035 17 14 5.3373 -9.8650 -0.0009 18 1 5.6376 -10.2576 1.3995 19 1 4.6792 -10.9966 -0.7018 20 1 6.6010 -9.5178 -0.6993 21 6 2.1970 -1.1972 -0.0005 22 1 -0.3634 -0.0005 1.0277 23 1 -0.3634 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6554 2.1323 -0.0004 26 1 4.1167 2.1395 0.0010 27 1 2.8576 -3.5991 0.8882 28 1 2.8591 -3.5985 -0.8918 29 1 2.9306 -6.1415 -0.0034 30 1 2.5256 -9.4546 -0.0037 31 1 1.6565 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085565964.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:54 Heat of formation + Delta-G solvation = -99.933267 kcal Electronic energy + Delta-G solvation = -17688.481073 eV Core-core repulsion = 14463.688181 eV Total energy + Delta-G solvation = -3224.792892 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.59736 -40.07171 -38.37203 -37.15051 -34.02733 -32.46347 -31.38891 -30.31032 -28.35155 -26.58757 -24.70350 -22.67798 -21.61932 -19.54973 -18.14225 -18.00965 -16.82821 -16.73741 -16.15057 -15.66678 -15.09540 -14.68715 -14.57506 -14.27804 -13.96225 -13.78686 -13.39717 -13.19999 -13.17675 -12.30446 -12.08609 -11.76305 -11.63521 -11.56705 -11.14842 -11.14104 -10.77267 -10.44125 -10.30422 -9.61326 -8.88321 -8.51935 -8.10006 -8.07253 -6.51126 -3.92734 1.05134 1.23707 3.06680 3.13197 3.23651 3.31550 3.48718 3.72597 4.13159 4.29190 4.57788 4.63577 4.90987 4.97857 5.07516 5.12485 5.29951 5.36811 5.41789 5.53312 5.60456 5.66684 5.94564 6.00072 6.06524 6.13158 6.37730 6.64962 7.41646 7.47419 7.93585 8.48198 9.06971 9.38287 9.89008 10.66281 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.036051 B = 0.004383 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.488974 B = 6386.936507 C = 7142.977899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.057 4.057 3 C -0.140 4.140 4 C -0.113 4.113 5 C 0.060 3.940 6 F -0.131 7.131 7 C 0.111 3.889 8 O -0.275 6.275 9 C 0.050 3.950 10 C 0.439 3.561 11 O -0.571 6.571 12 N -0.554 5.554 13 C -0.302 4.302 14 H 0.106 0.894 15 C 0.025 3.975 16 N -0.899 5.899 17 Si 0.934 3.066 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.268 1.268 21 C -0.189 4.189 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.131 0.869 26 H 0.140 0.860 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.394 0.606 30 H 0.273 0.727 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.965 15.867 0.011 17.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.058 4.058 3 C -0.158 4.158 4 C -0.132 4.132 5 C 0.040 3.960 6 F -0.110 7.110 7 C 0.063 3.937 8 O -0.187 6.187 9 C -0.029 4.029 10 C 0.224 3.776 11 O -0.455 6.455 12 N -0.191 5.191 13 C -0.431 4.431 14 H 0.124 0.876 15 C -0.177 4.177 16 N -0.540 5.540 17 Si 0.760 3.240 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.193 1.193 21 C -0.208 4.208 22 H 0.092 0.908 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.149 0.851 26 H 0.158 0.842 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.227 0.773 30 H 0.083 0.917 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.990 15.738 0.006 17.221 hybrid contribution -0.125 -0.949 0.017 0.957 sum -7.116 14.789 0.023 16.412 Atomic orbital electron populations 1.20810 0.90575 1.03084 1.02648 1.19753 0.96367 0.92267 0.97375 1.20727 0.92901 0.97863 1.04301 1.20950 0.94820 0.96164 1.01281 1.17010 0.77393 0.91778 1.09815 1.91518 1.28031 1.97182 1.94229 1.19202 0.91083 0.86124 0.97293 1.86286 1.33997 1.11060 1.87329 1.22583 0.94419 0.83567 1.02329 1.19276 0.88823 0.83539 0.85965 1.90586 1.14936 1.85196 1.54742 1.41684 1.09741 1.03568 1.64134 1.19738 0.92074 0.83217 1.48050 0.87640 1.25290 0.96422 0.99088 0.96891 1.69606 1.10601 1.23846 1.49930 0.85799 0.79775 0.79891 0.78520 1.20249 1.20801 1.19257 1.21120 0.91875 0.99668 1.08127 0.90793 0.91275 0.91185 0.85141 0.84249 0.90199 0.90194 0.77255 0.91664 0.84269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.06 -0.61 5.88 -104.63 -0.62 -1.23 16 3 C -0.14 -1.40 9.69 -39.57 -0.38 -1.78 16 4 C -0.11 -1.32 10.02 -39.54 -0.40 -1.71 16 5 C 0.06 0.93 7.31 -39.29 -0.29 0.64 16 6 F -0.13 -2.31 17.11 2.25 0.04 -2.28 16 7 C 0.11 1.81 6.69 -39.18 -0.26 1.55 16 8 O -0.28 -5.54 9.53 -39.52 -0.38 -5.92 16 9 C 0.05 0.92 5.22 36.00 0.19 1.11 16 10 C 0.44 10.75 7.86 -10.99 -0.09 10.67 16 11 O -0.57 -16.57 16.08 -14.36 -0.23 -16.80 16 12 N -0.55 -13.95 5.29 -10.96 -0.06 -14.01 16 13 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 14 H 0.11 3.08 7.16 -52.48 -0.38 2.71 16 15 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 16 N -0.90 -23.90 13.05 55.50 0.72 -23.17 16 17 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 C -0.19 -2.46 8.69 -39.45 -0.34 -2.80 16 22 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 24 H 0.07 0.50 8.08 -51.93 -0.42 0.09 16 25 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 26 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 27 H 0.08 1.25 7.66 -51.93 -0.40 0.85 16 28 H 0.08 1.25 7.66 -51.93 -0.40 0.85 16 29 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 30 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.14 1.60 6.30 -52.48 -0.33 1.27 16 LS Contribution 283.90 15.07 4.28 4.28 Total: -1.00 -32.80 283.90 -5.78 -38.58 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -3.07 Total: 5.59 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -2.07 Total: -2.01 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.67 Total: -37.18 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.61 Total: -22.72 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.80 -5.78 -38.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085565964.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.354 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds