Wall clock time and date at job start Sun Mar 29 2020 23:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47277 * 2 1 4 4 N 1.46498 * 109.47131 * 180.02562 * 3 2 1 5 5 C 1.36977 * 119.99952 * 278.15094 * 4 3 2 6 6 H 1.08005 * 120.00262 * 38.67185 * 5 4 3 7 7 C 1.38968 * 120.00335 * 218.67239 * 5 4 3 8 8 N 1.31424 * 119.99867 * 17.42065 * 7 5 4 9 9 Si 1.86797 * 120.00189 * 197.41784 * 7 5 4 10 10 H 1.48489 * 109.47192 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46944 * 120.00241 * 9 7 5 12 12 H 1.48497 * 109.47334 * 239.99560 * 9 7 5 13 13 C 1.34780 * 120.00237 * 98.15415 * 4 3 2 14 14 O 1.21657 * 119.99795 * 186.07309 * 13 4 3 15 15 C 1.47113 * 119.99465 * 6.07280 * 13 4 3 16 16 C 1.36095 * 123.47408 * 328.85963 * 15 13 4 17 17 S 1.70442 * 110.80874 * 180.02562 * 16 15 13 18 18 C 1.75500 * 92.45171 * 359.97438 * 17 16 15 19 19 C 1.32757 * 110.59687 * 0.02562 * 18 17 16 20 20 C 1.50697 * 123.46081 * 179.73458 * 19 18 17 21 21 H 1.09002 * 109.47052 * 299.99733 * 1 2 3 22 22 H 1.08998 * 109.46899 * 59.99876 * 1 2 3 23 23 H 1.09001 * 109.46883 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47052 * 240.00267 * 2 1 3 25 25 H 1.08999 * 109.47113 * 120.00629 * 2 1 3 26 26 H 1.09002 * 109.46862 * 60.00150 * 3 2 1 27 27 H 1.08999 * 109.47563 * 300.00354 * 3 2 1 28 28 H 0.96992 * 120.00361 * 184.90237 * 8 7 5 29 29 H 1.07998 * 124.59128 * 359.97438 * 16 15 13 30 30 H 1.07999 * 124.70220 * 180.02562 * 18 17 16 31 31 H 1.09001 * 109.47538 * 90.02092 * 20 19 18 32 32 H 1.08999 * 109.47564 * 210.02891 * 20 19 18 33 33 H 1.09006 * 109.47286 * 330.02618 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1904 1.2740 1.1733 6 1 3.8284 0.5773 1.9149 7 6 5.3517 1.9997 1.4103 8 7 5.6130 3.0726 0.6977 9 14 6.5412 1.4501 2.7416 10 1 6.0206 0.2223 3.3945 11 1 7.8659 1.1637 2.1344 12 1 6.6834 2.5273 3.7538 13 6 4.1785 1.6081 -1.1563 14 8 5.3900 1.4982 -1.1755 15 6 3.4486 1.9220 -2.3944 16 6 2.1834 1.4904 -2.6498 17 16 1.6524 2.0393 -4.1735 18 6 3.1649 2.8736 -4.4840 19 6 4.0010 2.7199 -3.4643 20 6 5.3863 3.3120 -3.4291 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.6768 1.9563 0.8900 27 1 1.6768 1.9564 -0.8899 28 1 6.4559 3.5383 0.8135 29 1 1.5959 0.8818 -1.9783 30 1 3.3850 3.4344 -5.3804 31 1 5.3453 4.3063 -2.9843 32 1 6.0391 2.6741 -2.8333 33 1 5.7766 3.3841 -4.4443 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094205169.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:35 Heat of formation + Delta-G solvation = 15.172614 kcal Electronic energy + Delta-G solvation = -17185.695536 eV Core-core repulsion = 14532.107186 eV Total energy + Delta-G solvation = -2653.588350 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.07870 -36.39587 -35.12929 -32.73589 -31.27608 -30.24370 -27.13209 -25.76771 -24.81592 -22.72162 -21.05170 -20.26792 -18.09166 -17.03984 -16.45753 -15.51460 -14.81898 -14.62160 -13.88065 -13.72355 -13.40173 -13.04384 -12.63334 -12.49707 -12.31996 -11.83600 -11.55259 -11.50710 -11.31179 -11.21222 -10.97383 -10.79448 -10.73110 -10.53768 -10.39132 -10.19654 -10.02654 -8.82264 -8.27506 -7.98247 -7.67356 -7.10436 -6.09928 -3.83977 1.46110 2.13202 2.47369 2.87042 3.32009 3.40287 3.41987 4.27869 4.66866 4.95877 5.30172 5.34398 5.40538 5.53494 5.58527 5.73372 5.88789 5.97271 6.03888 6.14276 6.22911 6.29047 6.36990 6.39591 6.44245 6.62989 6.71424 6.80965 6.88976 7.24741 7.60026 8.24427 9.04356 9.20461 9.65005 10.33306 10.96126 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.021090 B = 0.009405 C = 0.006774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.305560 B = 2976.346000 C = 4132.522902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.081 3.919 4 N -0.441 5.441 5 C -0.337 4.337 6 H 0.081 0.919 7 C 0.064 3.936 8 N -0.822 5.822 9 Si 0.910 3.090 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.286 1.286 13 C 0.523 3.477 14 O -0.529 6.529 15 C -0.109 4.109 16 C -0.249 4.249 17 S 0.104 5.896 18 C -0.250 4.250 19 C -0.047 4.047 20 C -0.100 4.100 21 H 0.055 0.945 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.264 0.736 29 H 0.184 0.816 30 H 0.158 0.842 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.581 -1.206 -6.722 10.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C -0.043 4.043 4 N -0.161 5.161 5 C -0.464 4.464 6 H 0.099 0.901 7 C -0.147 4.147 8 N -0.456 5.456 9 Si 0.737 3.263 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.213 1.213 13 C 0.310 3.690 14 O -0.408 6.408 15 C -0.126 4.126 16 C -0.385 4.385 17 S 0.368 5.632 18 C -0.384 4.384 19 C -0.059 4.059 20 C -0.159 4.159 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.200 0.800 30 H 0.175 0.825 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.199 -1.249 -7.519 11.946 hybrid contribution 1.758 0.022 1.450 2.278 sum -7.441 -1.227 -6.069 9.680 Atomic orbital electron populations 1.21754 0.96184 1.01198 1.01609 1.22004 0.94807 0.98999 1.02585 1.22169 0.84632 0.95191 1.02356 1.43171 1.02655 1.64468 1.05826 1.19075 1.09293 1.22660 0.95358 0.90081 1.25161 0.99065 0.93263 0.97172 1.69898 1.22649 1.14059 1.38971 0.86184 0.81241 0.78433 0.80453 1.19628 1.20662 1.21253 1.17093 0.86975 0.83572 0.81323 1.90544 1.13478 1.52492 1.84254 1.20836 0.93612 1.00126 0.98022 1.26263 1.00676 1.09770 1.01835 1.82543 1.17595 1.49517 1.13506 1.25057 0.97962 1.11016 1.04348 1.19989 0.97449 0.96684 0.91768 1.20616 0.92324 1.01560 1.01360 0.92567 0.93122 0.92991 0.92200 0.91132 0.91809 0.90343 0.92541 0.79950 0.82465 0.91440 0.88218 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.84 37.16 0.37 -1.55 16 2 C -0.15 -2.43 5.25 -26.73 -0.14 -2.57 16 3 C 0.08 1.62 4.87 -4.04 -0.02 1.60 16 4 N -0.44 -11.24 2.56 -116.13 -0.30 -11.53 16 5 C -0.34 -9.27 9.25 -14.98 -0.14 -9.41 16 6 H 0.08 2.14 7.89 -52.48 -0.41 1.72 16 7 C 0.06 1.80 4.42 -17.46 -0.08 1.72 16 8 N -0.82 -24.23 11.33 55.50 0.63 -23.60 16 9 Si 0.91 21.84 29.59 -169.99 -5.03 16.81 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.52 13.82 6.55 -12.66 -0.08 13.74 16 14 O -0.53 -15.72 12.29 5.23 0.06 -15.66 16 15 C -0.11 -2.39 5.59 -104.63 -0.59 -2.97 16 16 C -0.25 -4.52 8.40 29.96 0.25 -4.27 16 17 S 0.10 1.54 23.02 -107.50 -2.47 -0.94 16 18 C -0.25 -4.08 10.91 28.86 0.31 -3.77 16 19 C -0.05 -0.93 6.00 -104.06 -0.62 -1.56 16 20 C -0.10 -1.95 9.91 36.00 0.36 -1.59 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.05 0.59 7.83 -51.93 -0.41 0.19 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 1.02 7.06 -51.93 -0.37 0.65 16 25 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 27 H 0.08 1.49 4.21 -51.93 -0.22 1.27 16 28 H 0.26 7.47 8.32 -40.82 -0.34 7.13 16 29 H 0.18 3.07 3.11 -52.49 -0.16 2.91 16 30 H 0.16 2.10 8.06 -52.49 -0.42 1.67 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.10 2.30 5.93 -51.93 -0.31 1.99 16 33 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 LS Contribution 282.32 15.07 4.25 4.25 Total: -1.00 -31.82 282.32 -7.20 -39.02 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -3.97 Total: 2.25 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -0.38 Total: -10.61 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.33 Total: -35.13 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.06 Total: -15.66 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.47 Total: -0.94 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.82 -7.20 -39.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094205169.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.194 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds