Wall clock time and date at job start Sun Mar 29 2020 23:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32777 * 123.45786 * 2 1 4 4 S 1.75507 * 110.57536 * 180.22565 * 3 2 1 5 5 C 1.70453 * 92.44539 * 359.73550 * 4 3 2 6 6 C 1.36012 * 110.81633 * 0.02562 * 5 4 3 7 7 C 1.47187 * 123.45732 * 179.97438 * 6 5 4 8 8 O 1.21641 * 119.99821 * 168.74063 * 7 6 5 9 9 N 1.34772 * 120.00147 * 348.74562 * 7 6 5 10 10 C 1.46495 * 120.00191 * 7.04752 * 9 7 6 11 11 C 1.46504 * 119.99890 * 187.05012 * 9 7 6 12 12 H 1.09000 * 109.47004 * 0.02562 * 11 9 7 13 13 C 1.53002 * 109.47255 * 239.99929 * 11 9 7 14 14 C 1.50701 * 109.47119 * 119.99921 * 11 9 7 15 15 H 1.07993 * 120.00114 * 35.81800 * 14 11 9 16 16 C 1.37877 * 119.99898 * 215.82355 * 14 11 9 17 17 N 1.31517 * 120.00452 * 167.42488 * 16 14 11 18 18 Si 1.86808 * 120.00216 * 347.42311 * 16 14 11 19 19 H 1.48499 * 109.47090 * 86.30597 * 18 16 14 20 20 H 1.48499 * 109.47223 * 206.30831 * 18 16 14 21 21 H 1.48507 * 109.46686 * 326.31056 * 18 16 14 22 22 H 1.08994 * 109.47474 * 270.23435 * 1 2 3 23 23 H 1.08997 * 109.46894 * 30.24288 * 1 2 3 24 24 H 1.09008 * 109.46689 * 150.23656 * 1 2 3 25 25 H 1.07996 * 124.71128 * 359.93096 * 3 2 1 26 26 H 1.08003 * 124.59087 * 180.02562 * 5 4 3 27 27 H 1.09005 * 109.47324 * 66.67826 * 10 9 7 28 28 H 1.08995 * 109.47121 * 306.67785 * 10 9 7 29 29 H 1.09005 * 109.47231 * 186.68016 * 10 9 7 30 30 H 1.08997 * 109.46784 * 178.66831 * 13 11 9 31 31 H 1.09004 * 109.46594 * 298.67002 * 13 11 9 32 32 H 1.09004 * 109.46840 * 58.66783 * 13 11 9 33 33 H 0.96993 * 120.00755 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1078 0.0000 4 16 3.9499 0.7165 -0.0065 5 6 3.6411 -0.9599 -0.0012 6 6 2.3033 -1.2049 0.0045 7 6 1.7263 -2.5590 0.0095 8 8 0.5383 -2.7131 0.2202 9 7 2.5144 -3.6281 -0.2193 10 6 3.9662 -3.4600 -0.3194 11 6 1.9191 -4.9585 -0.3680 12 1 0.8365 -4.8857 -0.2641 13 6 2.4742 -5.8893 0.7120 14 6 2.2566 -5.5106 -1.7290 15 1 3.2189 -5.3024 -2.1727 16 6 1.3367 -6.2814 -2.4078 17 7 1.5206 -6.5564 -3.6806 18 14 -0.1710 -6.9351 -1.5195 19 1 -1.2499 -5.9155 -1.5593 20 1 -0.6386 -8.1769 -2.1861 21 1 0.1771 -7.2326 -0.1067 22 1 -0.3634 0.0042 1.0276 23 1 -0.3633 0.8878 -0.5176 24 1 -0.3633 -0.8922 -0.5102 25 1 1.8374 2.1103 -0.0011 26 1 4.4044 -1.7239 -0.0024 27 1 4.3647 -3.1584 0.6493 28 1 4.1929 -2.6932 -1.0601 29 1 4.4212 -4.4032 -0.6218 30 1 2.0137 -6.8725 0.6160 31 1 3.5539 -5.9805 0.5930 32 1 2.2507 -5.4777 1.6963 33 1 0.8738 -7.0990 -4.1581 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094216674.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:32:59 Heat of formation + Delta-G solvation = -3.593639 kcal Electronic energy + Delta-G solvation = -16854.296896 eV Core-core repulsion = 14199.894780 eV Total energy + Delta-G solvation = -2654.402116 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.18548 -38.25348 -37.18950 -34.90756 -33.08226 -31.08336 -28.56719 -28.25930 -27.27112 -25.00594 -23.03510 -20.88006 -19.75973 -18.90685 -18.43758 -17.39699 -17.02569 -16.35272 -16.14128 -15.16695 -14.68972 -14.66783 -14.50900 -14.34641 -14.06982 -13.88859 -13.52677 -13.33030 -13.21739 -12.96683 -12.81152 -12.62406 -12.24657 -12.06827 -11.83690 -11.77493 -11.31445 -10.80198 -10.59946 -9.79652 -9.48798 -9.09394 -8.40615 -6.41944 -0.12628 0.72509 1.00244 1.05519 1.27451 1.32968 1.40201 2.17753 2.28284 2.46512 3.02909 3.79076 3.85730 4.25119 4.26523 4.41061 4.49065 4.50203 4.66739 4.72169 4.74581 4.77857 4.82789 4.86712 5.01588 5.10810 5.27764 5.34238 5.54639 5.58874 5.79521 6.13536 6.61961 6.70420 7.21243 7.34979 8.74508 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.029788 B = 0.006681 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.745565 B = 4189.934009 C = 4523.324410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.084 4.084 3 C -0.241 4.241 4 S 0.235 5.765 5 C -0.237 4.237 6 C -0.182 4.182 7 C 0.554 3.446 8 O -0.594 6.594 9 N -0.589 5.589 10 C 0.066 3.934 11 C 0.227 3.773 12 H 0.035 0.965 13 C -0.143 4.143 14 C -0.526 4.526 15 H 0.054 0.946 16 C 0.030 3.970 17 N -0.930 5.930 18 Si 0.919 3.081 19 H -0.287 1.287 20 H -0.276 1.276 21 H -0.237 1.237 22 H 0.070 0.930 23 H 0.086 0.914 24 H 0.048 0.952 25 H 0.194 0.806 26 H 0.218 0.782 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.789 14.601 9.448 18.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.375 4.375 4 S 0.502 5.498 5 C -0.375 4.375 6 C -0.199 4.199 7 C 0.343 3.657 8 O -0.478 6.478 9 N -0.319 5.319 10 C -0.075 4.075 11 C 0.125 3.875 12 H 0.053 0.947 13 C -0.202 4.202 14 C -0.565 4.565 15 H 0.073 0.927 16 C -0.170 4.170 17 N -0.568 5.568 18 Si 0.744 3.256 19 H -0.214 1.214 20 H -0.202 1.202 21 H -0.161 1.161 22 H 0.089 0.911 23 H 0.105 0.895 24 H 0.067 0.933 25 H 0.212 0.788 26 H 0.234 0.766 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.484 15.264 9.390 19.421 hybrid contribution -2.265 -1.710 -0.271 2.851 sum 5.219 13.554 9.120 17.150 Atomic orbital electron populations 1.20477 0.89454 1.02512 1.02510 1.19983 0.97678 0.90552 1.01267 1.25587 0.97356 1.02725 1.11867 1.82572 1.03985 0.95014 1.68220 1.27481 1.00351 1.05248 1.04379 1.20221 0.93812 0.93270 1.12632 1.18284 0.85785 0.84956 0.76683 1.90648 1.17376 1.86806 1.52926 1.48104 1.08115 1.07595 1.68077 1.22440 0.79665 1.03666 1.01774 1.18997 0.94329 0.79735 0.94418 0.94678 1.22175 1.01980 0.99221 0.96806 1.21322 1.02191 1.31610 1.01330 0.92737 1.25640 1.00298 0.96377 0.94726 1.70038 1.38428 1.39172 1.09200 0.86204 0.80127 0.78091 0.81182 1.21399 1.20152 1.16061 0.91123 0.89542 0.93302 0.78841 0.76632 0.89242 0.90298 0.90236 0.92689 0.91408 0.93759 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.77 9.42 71.23 0.67 -2.10 16 2 C -0.08 -2.55 6.00 -19.47 -0.12 -2.67 16 3 C -0.24 -5.28 10.91 66.64 0.73 -4.55 16 4 S 0.23 4.35 23.02 -56.49 -1.30 3.04 16 5 C -0.24 -6.05 8.85 67.30 0.60 -5.46 16 6 C -0.18 -6.25 5.93 -19.87 -0.12 -6.36 16 7 C 0.55 24.34 7.60 86.59 0.66 24.99 16 8 O -0.59 -30.37 13.78 -4.16 -0.06 -30.42 16 9 N -0.59 -25.08 2.75 -830.97 -2.29 -27.36 16 10 C 0.07 2.07 7.56 127.77 0.97 3.03 16 11 C 0.23 11.07 2.17 44.25 0.10 11.16 16 12 H 0.04 1.91 4.76 -2.39 -0.01 1.90 16 13 C -0.14 -5.83 9.01 71.98 0.65 -5.19 16 14 C -0.53 -29.37 8.62 25.60 0.22 -29.15 16 15 H 0.05 3.22 7.26 -2.91 -0.02 3.20 16 16 C 0.03 1.74 5.47 84.65 0.46 2.20 16 17 N -0.93 -57.32 13.96 21.45 0.30 -57.02 16 18 Si 0.92 45.69 26.47 68.60 1.82 47.51 16 19 H -0.29 -14.97 7.11 99.48 0.71 -14.26 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.24 -10.83 5.85 99.48 0.58 -10.24 16 22 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 23 H 0.09 2.04 8.13 -2.39 -0.02 2.02 16 24 H 0.05 1.88 6.35 -2.38 -0.02 1.87 16 25 H 0.19 2.93 8.06 -2.91 -0.02 2.91 16 26 H 0.22 4.61 3.52 -2.92 -0.01 4.60 16 27 H 0.09 2.09 6.94 -2.38 -0.02 2.07 16 28 H 0.08 2.24 5.81 -2.39 -0.01 2.23 16 29 H 0.08 2.58 6.44 -2.38 -0.02 2.56 16 30 H 0.05 2.27 6.39 -2.39 -0.02 2.25 16 31 H 0.07 2.47 7.25 -2.39 -0.02 2.45 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -73.03 277.09 4.29 -68.75 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 1.01 Total: 9.60 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 4.81 Total: -14.09 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -1.99 Total: -84.38 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.06 Total: -30.42 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.82 Total: 47.51 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -1.30 Total: 3.04 kcal Total: -73.03 4.29 -68.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094216674.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.153 kcal (2) G-P(sol) polarization free energy of solvation -73.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds