Wall clock time and date at job start Sun Mar 29 2020 23:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32774 * 123.45879 * 2 1 4 4 S 1.75500 * 110.57366 * 179.73404 * 3 2 1 5 5 C 1.70444 * 92.44757 * 359.97438 * 4 3 2 6 6 C 1.36013 * 110.81665 * 359.97438 * 5 4 3 7 7 C 1.47183 * 123.45867 * 180.02562 * 6 5 4 8 8 O 1.21639 * 119.99781 * 179.97438 * 7 6 5 9 9 N 1.34780 * 120.00403 * 359.97438 * 7 6 5 10 10 C 1.46502 * 120.00145 * 180.02562 * 9 7 6 11 11 C 1.52991 * 109.46909 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47132 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47256 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00122 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00065 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99721 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00085 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47005 * 60.00387 * 17 15 13 19 19 H 1.48501 * 109.47316 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47587 * 300.00710 * 17 15 13 21 21 H 1.09001 * 109.47079 * 90.02022 * 1 2 3 22 22 H 1.08993 * 109.47197 * 210.02593 * 1 2 3 23 23 H 1.09000 * 109.47152 * 330.02519 * 1 2 3 24 24 H 1.08004 * 124.70891 * 359.75337 * 3 2 1 25 25 H 1.08003 * 124.59179 * 179.97438 * 5 4 3 26 26 H 0.96998 * 119.99383 * 359.97438 * 9 7 6 27 27 H 1.09001 * 109.47092 * 300.00032 * 10 9 7 28 28 H 1.09004 * 109.46950 * 59.99916 * 10 9 7 29 29 H 1.09001 * 109.47406 * 300.00007 * 11 10 9 30 30 H 1.09004 * 109.47246 * 60.00265 * 11 10 9 31 31 H 1.09001 * 109.47374 * 300.00508 * 12 11 10 32 32 H 1.09004 * 109.46445 * 60.00256 * 12 11 10 33 33 H 0.96995 * 119.99682 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9498 0.7164 0.0076 5 6 3.6410 -0.9599 0.0115 6 6 2.3032 -1.2049 0.0077 7 6 1.7262 -2.5589 0.0103 8 8 0.5187 -2.7054 0.0071 9 7 2.5357 -3.6365 0.0162 10 6 1.9614 -4.9842 0.0182 11 6 3.0884 -6.0188 0.0243 12 6 2.4886 -7.4264 0.0270 13 6 3.5987 -8.4455 0.0325 14 1 4.6290 -8.1217 0.0342 15 6 3.2990 -9.7914 0.0351 16 7 2.0444 -10.1857 0.0325 17 14 4.6751 -11.0546 0.0411 18 1 5.5105 -10.8707 1.2550 19 1 4.0929 -12.4207 0.0427 20 1 5.5158 -10.8766 -1.1699 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3633 -0.8897 0.5142 23 1 -0.3633 0.8902 0.5134 24 1 1.8374 2.1103 -0.0038 25 1 4.4043 -1.7239 0.0163 26 1 3.4986 -3.5196 0.0183 27 1 1.3432 -5.1144 0.9065 28 1 1.3492 -5.1196 -0.8735 29 1 3.7062 -5.8885 -0.8642 30 1 3.7009 -5.8836 0.9158 31 1 1.8710 -7.5565 0.9157 32 1 1.8759 -7.5619 -0.8643 33 1 1.8336 -11.1324 0.0340 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094216680.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:32:35 Heat of formation + Delta-G solvation = -49.575785 kcal Electronic energy + Delta-G solvation = -15531.927624 eV Core-core repulsion = 12875.531572 eV Total energy + Delta-G solvation = -2656.396052 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.02429 -38.25473 -36.92030 -35.26295 -33.34324 -31.81480 -29.02877 -28.19206 -25.72250 -24.47766 -22.34986 -21.79071 -19.81964 -18.72871 -18.42026 -17.89807 -16.74997 -16.67112 -16.32880 -15.57613 -15.33211 -14.53228 -14.44106 -14.22139 -14.07988 -13.76735 -13.54876 -13.50888 -13.01012 -12.80756 -12.71521 -12.55576 -12.41920 -11.83458 -11.68966 -11.57625 -11.25973 -10.81306 -10.55312 -10.19626 -9.84427 -9.23018 -8.19847 -6.31700 -0.21910 0.64501 0.96527 0.97296 1.41578 1.44742 1.52624 2.17814 2.30758 2.42647 3.13812 3.74053 3.93521 4.16924 4.18912 4.22024 4.40605 4.52441 4.65872 4.73211 4.81549 4.91991 4.94543 5.01568 5.14856 5.28366 5.39887 5.50955 5.59132 5.69110 5.83096 6.21247 6.53324 6.85576 7.19816 7.37953 8.92174 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.042853 B = 0.003475 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.241528 B = 8055.289672 C = 8677.480136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.080 4.080 3 C -0.244 4.244 4 S 0.250 5.750 5 C -0.209 4.209 6 C -0.183 4.183 7 C 0.566 3.434 8 O -0.578 6.578 9 N -0.711 5.711 10 C 0.131 3.869 11 C -0.102 4.102 12 C 0.024 3.976 13 C -0.543 4.543 14 H 0.067 0.933 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.265 1.265 19 H -0.286 1.286 20 H -0.265 1.265 21 H 0.067 0.933 22 H 0.062 0.938 23 H 0.085 0.915 24 H 0.194 0.806 25 H 0.191 0.809 26 H 0.412 0.588 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.068 0.932 31 H -0.008 1.008 32 H -0.008 1.008 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.964 24.929 -0.017 25.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.091 4.091 3 C -0.378 4.378 4 S 0.517 5.483 5 C -0.347 4.347 6 C -0.202 4.202 7 C 0.353 3.647 8 O -0.459 6.459 9 N -0.362 5.362 10 C 0.007 3.993 11 C -0.139 4.139 12 C -0.014 4.014 13 C -0.581 4.581 14 H 0.085 0.915 15 C -0.201 4.201 16 N -0.576 5.576 17 Si 0.792 3.208 18 H -0.190 1.190 19 H -0.212 1.212 20 H -0.190 1.190 21 H 0.086 0.914 22 H 0.081 0.919 23 H 0.103 0.897 24 H 0.211 0.789 25 H 0.208 0.792 26 H 0.249 0.751 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.011 0.989 32 H 0.011 0.989 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.362 25.547 -0.016 26.327 hybrid contribution -0.813 -2.125 -0.024 2.276 sum 5.549 23.421 -0.040 24.070 Atomic orbital electron populations 1.20580 0.89219 1.03279 1.02601 1.19984 0.97764 0.90457 1.00878 1.25650 0.97312 1.03021 1.11858 1.82780 1.03897 0.94310 1.67274 1.26038 0.99033 1.05185 1.04485 1.20114 0.93462 0.93158 1.13456 1.18135 0.86066 0.84791 0.75665 1.90718 1.15896 1.87203 1.52122 1.45843 1.10679 1.05270 1.74422 1.21259 0.96645 0.80560 1.00817 1.21602 0.96636 0.93545 1.02158 1.18941 0.95566 0.91805 0.95098 1.21654 0.93884 0.91879 1.50662 0.91473 1.26040 0.98106 1.01254 0.94725 1.70108 1.19610 1.16269 1.51574 0.85454 0.78798 0.77216 0.79295 1.18971 1.21175 1.18987 0.91417 0.91925 0.89664 0.78936 0.79164 0.75084 0.93074 0.93093 0.91301 0.91302 0.98936 0.98948 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.25 9.55 71.24 0.68 -1.57 16 2 C -0.08 -1.81 6.01 -19.47 -0.12 -1.92 16 3 C -0.24 -3.77 10.91 66.64 0.73 -3.04 16 4 S 0.25 3.09 23.02 -56.49 -1.30 1.79 16 5 C -0.21 -3.61 10.38 67.30 0.70 -2.91 16 6 C -0.18 -4.55 5.98 -19.87 -0.12 -4.67 16 7 C 0.57 18.17 7.79 86.59 0.67 18.84 16 8 O -0.58 -22.95 14.20 -4.15 -0.06 -23.01 16 9 N -0.71 -20.92 5.52 -466.60 -2.58 -23.50 16 10 C 0.13 4.77 5.67 86.38 0.49 5.26 16 11 C -0.10 -3.95 5.27 30.59 0.16 -3.79 16 12 C 0.02 1.24 4.97 29.85 0.15 1.39 16 13 C -0.54 -30.38 9.11 25.60 0.23 -30.14 16 14 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 15 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 16 N -0.94 -57.43 13.29 21.45 0.28 -57.15 16 17 Si 0.97 43.77 29.54 68.60 2.03 45.79 16 18 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 19 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.06 1.84 6.01 -2.39 -0.01 1.82 16 23 H 0.08 1.44 8.13 -2.39 -0.02 1.42 16 24 H 0.19 1.85 8.06 -2.91 -0.02 1.83 16 25 H 0.19 2.33 7.01 -2.91 -0.02 2.31 16 26 H 0.41 9.19 6.97 -92.71 -0.65 8.54 16 27 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 31 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 32 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 33 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -71.38 297.23 2.88 -68.50 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.47 Total: 9.87 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: 4.04 Total: -22.29 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -2.29 Total: -80.65 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.06 Total: -23.01 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.30 Total: 1.79 kcal Total: -71.38 2.88 -68.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094216680.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.925 kcal (2) G-P(sol) polarization free energy of solvation -71.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds