Wall clock time and date at job start Sun Mar 29 2020 23:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47391 * 2 1 4 4 H 1.08999 * 109.46983 * 305.00292 * 3 2 1 5 5 C 1.50700 * 109.47433 * 185.00059 * 3 2 1 6 6 H 1.07995 * 120.00109 * 240.00043 * 5 3 2 7 7 C 1.37873 * 119.99681 * 60.00380 * 5 3 2 8 8 N 1.31521 * 120.00364 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99840 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47130 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47127 * 119.99459 * 9 7 5 12 12 H 1.48498 * 109.47285 * 239.99667 * 9 7 5 13 13 N 1.46506 * 109.46691 * 65.00031 * 3 2 1 14 14 C 1.34773 * 119.99969 * 274.72265 * 13 3 2 15 15 O 1.21640 * 120.00408 * 0.02562 * 14 13 3 16 16 C 1.47196 * 119.99993 * 180.02562 * 14 13 3 17 17 C 1.36008 * 123.45886 * 359.70635 * 16 14 13 18 18 S 1.70445 * 110.81660 * 179.85746 * 17 16 14 19 19 C 1.75503 * 92.44363 * 0.34988 * 18 17 16 20 20 C 1.32770 * 110.57549 * 359.79970 * 19 18 17 21 21 C 1.50709 * 123.45723 * 180.02562 * 20 19 18 22 22 H 1.08997 * 109.46886 * 299.99799 * 1 2 3 23 23 H 1.08997 * 109.46969 * 59.99876 * 1 2 3 24 24 H 1.09005 * 109.46969 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46841 * 240.00223 * 2 1 3 26 26 H 1.09000 * 109.47546 * 120.00589 * 2 1 3 27 27 H 0.96994 * 119.99652 * 180.02562 * 8 7 5 28 28 H 0.97005 * 119.99811 * 95.00317 * 13 3 2 29 29 H 1.08001 * 124.58864 * 359.97438 * 17 16 14 30 30 H 1.08000 * 124.71318 * 179.80711 * 19 18 17 31 31 H 1.08999 * 109.47073 * 269.98265 * 21 20 19 32 32 H 1.08993 * 109.46746 * 29.97897 * 21 20 19 33 33 H 1.09000 * 109.46736 * 149.97732 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8800 -1.3812 10 1 6.5988 1.5451 -0.1937 11 1 6.4962 -0.5191 -1.4628 12 1 6.4000 1.6157 -2.6092 13 7 1.6525 2.0974 1.2519 14 6 0.4373 2.6692 1.3651 15 8 -0.3378 2.6411 0.4282 16 6 0.0481 3.3277 2.6227 17 6 0.8558 3.3953 3.7150 18 16 0.0868 4.2308 4.9861 19 6 -1.3657 4.4917 4.0362 20 6 -1.2329 3.9629 2.8257 21 6 -2.3083 4.0201 1.7714 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.8293 -0.0617 -2.9496 28 1 2.2720 2.1230 1.9979 29 1 1.8504 2.9779 3.7688 30 1 -2.2454 5.0105 4.3876 31 1 -2.9532 3.1461 1.8625 32 1 -2.9012 4.9247 1.9060 33 1 -1.8482 4.0309 0.7833 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094247601.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:07 Heat of formation + Delta-G solvation = -37.600278 kcal Electronic energy + Delta-G solvation = -16618.281712 eV Core-core repulsion = 13962.404957 eV Total energy + Delta-G solvation = -2655.876755 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.93481 -38.29690 -36.75402 -34.41695 -33.11290 -31.61432 -29.09266 -28.32260 -25.55913 -24.68273 -22.37621 -21.17488 -20.09151 -18.70852 -18.31539 -17.49764 -17.05101 -16.29584 -15.96404 -15.18811 -14.76409 -14.63028 -14.30178 -14.07541 -13.78913 -13.49766 -13.46174 -13.18755 -12.93122 -12.85304 -12.74859 -12.68565 -12.14706 -12.06360 -11.80051 -11.59377 -11.05380 -10.62138 -10.48965 -9.83473 -9.64538 -9.14272 -8.17037 -6.34512 -0.14134 0.69647 1.00498 1.08843 1.43324 1.44440 1.56148 2.35430 2.52942 2.68147 3.12580 3.80402 4.17074 4.29044 4.43437 4.48774 4.56466 4.69584 4.75684 4.80436 4.86249 5.04565 5.07257 5.24455 5.33388 5.43430 5.52809 5.58955 5.69727 5.79001 5.93009 6.16107 6.73292 6.99299 7.32562 7.57494 8.88702 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.029403 B = 0.005843 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.058155 B = 4790.835347 C = 5404.264000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.279 3.721 4 H 0.000 1.000 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.261 1.261 11 H -0.278 1.278 12 H -0.284 1.284 13 N -0.701 5.701 14 C 0.556 3.444 15 O -0.576 6.576 16 C -0.178 4.178 17 C -0.216 4.216 18 S 0.245 5.755 19 C -0.241 4.241 20 C -0.080 4.080 21 C -0.095 4.095 22 H 0.041 0.959 23 H 0.027 0.973 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.039 0.961 27 H 0.265 0.735 28 H 0.399 0.601 29 H 0.182 0.818 30 H 0.196 0.804 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.946 6.813 15.484 17.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.018 0.982 5 C -0.586 4.586 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.185 1.185 11 H -0.203 1.203 12 H -0.210 1.210 13 N -0.349 5.349 14 C 0.343 3.657 15 O -0.458 6.458 16 C -0.197 4.197 17 C -0.354 4.354 18 S 0.512 5.488 19 C -0.376 4.376 20 C -0.091 4.091 21 C -0.154 4.154 22 H 0.060 0.940 23 H 0.046 0.954 24 H 0.064 0.936 25 H 0.091 0.909 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.234 0.766 29 H 0.199 0.801 30 H 0.213 0.787 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.016 7.082 16.138 18.622 hybrid contribution 0.827 -0.688 -1.923 2.204 sum -5.189 6.394 14.214 16.427 Atomic orbital electron populations 1.21664 0.96985 0.99103 1.00235 1.21778 0.93764 0.99097 1.01250 1.18390 0.93706 0.89164 0.81141 0.98234 1.21590 0.91350 1.38962 1.06737 0.91189 1.25766 1.03345 0.94324 0.94966 1.70055 1.37017 1.38328 1.09895 0.85321 0.79072 0.77876 0.78202 1.18512 1.20334 1.20980 1.46160 1.15348 1.55816 1.17625 1.18125 0.81958 0.78318 0.87292 1.90683 1.52211 1.61341 1.41604 1.20332 0.96845 1.07513 0.94979 1.25954 1.05425 1.05400 0.98666 1.82555 1.04799 1.48845 1.12620 1.25628 1.04783 1.09902 0.97271 1.19975 0.94264 0.98297 0.96544 1.20552 0.95552 1.02368 0.96923 0.94035 0.95359 0.93586 0.90853 0.94211 0.92553 0.76613 0.80069 0.78683 0.91487 0.89581 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.52 71.98 0.61 -5.07 16 2 C -0.12 -6.04 5.45 30.59 0.17 -5.87 16 3 C 0.28 14.62 2.24 44.24 0.10 14.72 16 4 H 0.00 -0.01 7.57 -2.39 -0.02 -0.03 16 5 C -0.55 -29.32 8.73 25.60 0.22 -29.10 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.02 0.87 5.29 84.65 0.45 1.32 16 8 N -0.91 -52.63 11.29 21.45 0.24 -52.38 16 9 Si 0.97 42.22 29.54 68.60 2.03 44.25 16 10 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 13 N -0.70 -30.26 4.99 -449.58 -2.24 -32.51 16 14 C 0.56 23.57 6.36 86.60 0.55 24.12 16 15 O -0.58 -28.14 11.37 -4.16 -0.05 -28.19 16 16 C -0.18 -5.88 5.98 -19.87 -0.12 -5.99 16 17 C -0.22 -5.44 10.38 67.30 0.70 -4.74 16 18 S 0.24 4.36 23.02 -56.49 -1.30 3.06 16 19 C -0.24 -4.95 10.91 66.64 0.73 -4.23 16 20 C -0.08 -2.29 6.01 -19.46 -0.12 -2.41 16 21 C -0.10 -2.72 9.55 71.24 0.68 -2.04 16 22 H 0.04 1.88 5.67 -2.39 -0.01 1.87 16 23 H 0.03 1.40 7.85 -2.39 -0.02 1.38 16 24 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 25 H 0.07 4.10 5.95 -2.38 -0.01 4.09 16 26 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 28 H 0.40 14.71 7.04 -92.70 -0.65 14.06 16 29 H 0.18 3.93 7.01 -2.91 -0.02 3.91 16 30 H 0.20 2.68 8.06 -2.91 -0.02 2.66 16 31 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.09 1.86 8.13 -2.39 -0.02 1.84 16 33 H 0.06 2.17 6.02 -2.39 -0.01 2.15 16 Total: -1.00 -66.34 284.71 3.12 -63.21 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: 0.47 Total: 21.86 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: 3.97 Total: -19.30 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -2.00 Total: -84.89 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.05 Total: -28.19 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -1.30 Total: 3.06 kcal Total: -66.34 3.12 -63.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094247601.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.610 kcal (2) G-P(sol) polarization free energy of solvation -66.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds