Wall clock time and date at job start Sun Mar 29 2020 23:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47660 * 2 1 4 4 C 1.37471 * 123.35753 * 265.22792 * 3 2 1 5 5 C 1.33817 * 115.10415 * 180.29069 * 4 3 2 6 6 S 1.70616 * 110.95324 * 359.72103 * 5 4 3 7 7 C 1.36653 * 123.34882 * 84.99466 * 3 2 1 8 8 C 1.46586 * 125.45742 * 0.02562 * 7 3 2 9 9 O 1.21697 * 119.99999 * 359.71340 * 8 7 3 10 10 N 1.34777 * 120.00074 * 179.71301 * 8 7 3 11 11 C 1.46497 * 120.00376 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46725 * 35.00314 * 11 10 8 13 13 C 1.52997 * 109.47188 * 275.00479 * 11 10 8 14 14 C 1.50697 * 109.47081 * 155.00043 * 11 10 8 15 15 H 1.07999 * 120.00055 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99687 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00458 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99926 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47262 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46882 * 119.99668 * 18 16 14 21 21 H 1.48501 * 109.47152 * 239.99726 * 18 16 14 22 22 H 1.09004 * 109.46957 * 300.00075 * 1 2 3 23 23 H 1.09001 * 109.47207 * 59.99656 * 1 2 3 24 24 H 1.09000 * 109.47141 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46957 * 239.99925 * 2 1 3 26 26 H 1.09001 * 109.47207 * 120.00344 * 2 1 3 27 27 H 1.08002 * 122.44405 * 0.03123 * 4 3 2 28 28 H 1.07998 * 124.52109 * 179.69622 * 5 4 3 29 29 H 0.97006 * 119.99702 * 0.02562 * 10 8 7 30 30 H 1.09002 * 109.47153 * 299.99573 * 13 11 10 31 31 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 32 32 H 1.09004 * 109.47261 * 59.99745 * 13 11 10 33 33 H 0.96999 * 120.00480 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3745 2.1015 -1.1443 5 6 2.8068 3.3533 -0.9523 6 16 2.7998 3.7537 0.7062 7 6 2.1890 2.1622 1.1372 8 6 1.9004 1.7021 2.4987 9 8 1.4796 0.5754 2.6839 10 7 2.1010 2.5271 3.5455 11 6 1.8121 2.0676 4.9062 12 1 2.0527 1.0078 4.9905 13 6 0.3280 2.2795 5.2117 14 6 2.6441 2.8512 5.8883 15 1 3.3202 3.6154 5.5343 16 6 2.5422 2.5925 7.2388 17 7 1.7186 1.6623 7.6698 18 14 3.5730 3.5644 8.4563 19 1 4.4113 4.5462 7.7224 20 1 2.6787 4.2842 9.3983 21 1 4.4480 2.6358 9.2162 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.3037 1.6570 -2.1260 28 1 3.1187 4.0209 -1.7418 29 1 2.4361 3.4253 3.3978 30 1 0.0874 3.3393 5.1274 31 1 0.1130 1.9372 6.2240 32 1 -0.2738 1.7127 4.5013 33 1 1.6471 1.4800 8.6199 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112010232.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:46 Heat of formation + Delta-G solvation = -20.870032 kcal Electronic energy + Delta-G solvation = -16408.826919 eV Core-core repulsion = 13753.675642 eV Total energy + Delta-G solvation = -2655.151277 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.32410 -37.62642 -34.76922 -32.61892 -32.33389 -29.87804 -28.16051 -25.30430 -25.04156 -22.23825 -21.84575 -19.83464 -18.70765 -17.84276 -16.38818 -15.46082 -15.22058 -14.81165 -14.42395 -13.95022 -13.85186 -13.39497 -12.98837 -12.73832 -12.42106 -12.20521 -11.75908 -11.69176 -11.31550 -11.08975 -10.98684 -10.79580 -10.72942 -10.51660 -10.28540 -10.24193 -9.10502 -9.05098 -8.66429 -8.55817 -8.33701 -7.91260 -6.12975 -4.22173 0.73926 1.65579 2.04719 2.57202 3.23870 3.31617 3.34574 3.84699 4.06401 4.38319 4.90277 5.19501 5.24314 5.29441 5.45187 5.60758 5.68005 5.84297 5.94617 6.13458 6.24239 6.44014 6.57439 6.71044 6.83438 6.96429 7.14013 7.42201 7.54678 7.68537 7.90433 8.13574 8.61723 8.76292 9.05619 9.45175 10.93123 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.030391 B = 0.005863 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.105234 B = 4774.721191 C = 5453.073453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.069 4.069 3 C -0.037 4.037 4 C -0.143 4.143 5 C -0.244 4.244 6 S 0.190 5.810 7 C -0.248 4.248 8 C 0.573 3.427 9 O -0.536 6.536 10 N -0.703 5.703 11 C 0.265 3.735 12 H 0.051 0.949 13 C -0.147 4.147 14 C -0.534 4.534 15 H 0.062 0.938 16 C 0.067 3.933 17 N -0.883 5.883 18 Si 0.902 3.098 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.062 0.938 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.096 0.904 27 H 0.139 0.861 28 H 0.164 0.836 29 H 0.385 0.615 30 H 0.026 0.974 31 H 0.091 0.909 32 H 0.016 0.984 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.848 3.057 -15.536 15.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 C -0.051 4.051 4 C -0.175 4.175 5 C -0.381 4.381 6 S 0.458 5.542 7 C -0.368 4.368 8 C 0.358 3.642 9 O -0.416 6.416 10 N -0.351 5.351 11 C 0.164 3.836 12 H 0.069 0.931 13 C -0.206 4.206 14 C -0.572 4.572 15 H 0.080 0.920 16 C -0.137 4.137 17 N -0.520 5.520 18 Si 0.729 3.271 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 H 0.081 0.919 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.115 0.885 27 H 0.157 0.843 28 H 0.181 0.819 29 H 0.218 0.782 30 H 0.046 0.954 31 H 0.110 0.890 32 H 0.035 0.965 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.889 3.514 -14.347 14.798 hybrid contribution 0.382 -0.130 -0.397 0.566 sum 1.271 3.384 -14.744 15.181 Atomic orbital electron populations 1.21594 0.94547 1.01516 1.01676 1.20365 0.96399 0.90720 1.03326 1.19490 0.97558 0.97586 0.90467 1.19873 1.03918 0.94243 0.99450 1.25161 1.09488 1.01518 1.01965 1.83081 1.60121 1.12688 0.98315 1.24895 1.14492 0.98802 0.98655 1.16975 0.78996 0.85645 0.82609 1.90740 1.46843 1.19131 1.84895 1.46487 1.64552 1.15637 1.08377 1.18795 0.92817 0.96916 0.75090 0.93077 1.22081 0.97305 0.98299 1.02875 1.21247 1.23963 1.20767 0.91255 0.92017 1.24881 0.95385 0.95171 0.98217 1.69909 1.36034 1.31133 1.14973 0.86388 0.79990 0.79793 0.80911 1.19705 1.20842 1.20840 0.91922 0.93632 0.92584 0.91853 0.88529 0.84306 0.81864 0.78216 0.95446 0.89033 0.96540 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.77 37.15 0.36 -1.54 16 2 C -0.07 -1.00 5.50 -27.89 -0.15 -1.16 16 3 C -0.04 -0.55 5.16 -105.48 -0.54 -1.10 16 4 C -0.14 -1.75 9.96 -41.41 -0.41 -2.17 16 5 C -0.24 -2.77 10.92 29.18 0.32 -2.45 16 6 S 0.19 2.51 22.16 -107.50 -2.38 0.13 16 7 C -0.25 -4.22 6.45 -36.79 -0.24 -4.46 16 8 C 0.57 12.08 7.74 -12.89 -0.10 11.98 16 9 O -0.54 -12.69 13.37 5.19 0.07 -12.63 16 10 N -0.70 -15.33 5.06 -56.28 -0.28 -15.62 16 11 C 0.27 6.84 2.56 -69.09 -0.18 6.66 16 12 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 13 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 14 C -0.53 -14.27 8.73 -34.44 -0.30 -14.58 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 16 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 17 N -0.88 -24.88 11.32 55.43 0.63 -24.25 16 18 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H 0.06 1.04 7.59 -51.93 -0.39 0.65 16 23 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 26 H 0.10 1.67 6.33 -51.93 -0.33 1.34 16 27 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.16 1.36 8.06 -52.49 -0.42 0.93 16 29 H 0.39 7.50 7.65 -40.82 -0.31 7.19 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 292.21 15.07 4.40 4.40 Total: -1.00 -29.64 292.21 -7.82 -37.46 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -4.24 Total: 5.29 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -0.99 Total: -10.45 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.34 Total: -39.87 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.07 Total: -12.63 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.38 Total: 0.13 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.64 -7.82 -37.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112010232.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.594 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds