Wall clock time and date at job start Sun Mar 29 2020 23:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47660 * 2 1 4 4 C 1.37471 * 123.35753 * 265.22792 * 3 2 1 5 5 C 1.33817 * 115.10415 * 180.29069 * 4 3 2 6 6 S 1.70616 * 110.95324 * 359.72103 * 5 4 3 7 7 C 1.36653 * 123.34882 * 84.99466 * 3 2 1 8 8 C 1.46586 * 125.45742 * 0.02562 * 7 3 2 9 9 O 1.21697 * 119.99999 * 359.71340 * 8 7 3 10 10 N 1.34777 * 120.00074 * 179.71301 * 8 7 3 11 11 C 1.46497 * 120.00376 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46725 * 35.00314 * 11 10 8 13 13 C 1.52997 * 109.47188 * 275.00479 * 11 10 8 14 14 C 1.50697 * 109.47081 * 155.00043 * 11 10 8 15 15 H 1.07999 * 120.00055 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99687 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00458 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99926 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47262 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46882 * 119.99668 * 18 16 14 21 21 H 1.48501 * 109.47152 * 239.99726 * 18 16 14 22 22 H 1.09004 * 109.46957 * 300.00075 * 1 2 3 23 23 H 1.09001 * 109.47207 * 59.99656 * 1 2 3 24 24 H 1.09000 * 109.47141 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46957 * 239.99925 * 2 1 3 26 26 H 1.09001 * 109.47207 * 120.00344 * 2 1 3 27 27 H 1.08002 * 122.44405 * 0.03123 * 4 3 2 28 28 H 1.07998 * 124.52109 * 179.69622 * 5 4 3 29 29 H 0.97006 * 119.99702 * 0.02562 * 10 8 7 30 30 H 1.09002 * 109.47153 * 299.99573 * 13 11 10 31 31 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 32 32 H 1.09004 * 109.47261 * 59.99745 * 13 11 10 33 33 H 0.96999 * 120.00480 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3745 2.1015 -1.1443 5 6 2.8068 3.3533 -0.9523 6 16 2.7998 3.7537 0.7062 7 6 2.1890 2.1622 1.1372 8 6 1.9004 1.7021 2.4987 9 8 1.4796 0.5754 2.6839 10 7 2.1010 2.5271 3.5455 11 6 1.8121 2.0676 4.9062 12 1 2.0527 1.0078 4.9905 13 6 0.3280 2.2795 5.2117 14 6 2.6441 2.8512 5.8883 15 1 3.3202 3.6154 5.5343 16 6 2.5422 2.5925 7.2388 17 7 1.7186 1.6623 7.6698 18 14 3.5730 3.5644 8.4563 19 1 4.4113 4.5462 7.7224 20 1 2.6787 4.2842 9.3983 21 1 4.4480 2.6358 9.2162 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.3037 1.6570 -2.1260 28 1 3.1187 4.0209 -1.7418 29 1 2.4361 3.4253 3.3978 30 1 0.0874 3.3393 5.1274 31 1 0.1130 1.9372 6.2240 32 1 -0.2738 1.7127 4.5013 33 1 1.6471 1.4800 8.6199 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112010232.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:46 Heat of formation + Delta-G solvation = -39.438617 kcal Electronic energy + Delta-G solvation = -16409.632113 eV Core-core repulsion = 13753.675642 eV Total energy + Delta-G solvation = -2655.956471 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.82387 -38.93430 -36.66985 -34.39873 -33.60896 -31.57631 -29.64093 -27.37639 -26.28455 -23.61530 -23.20684 -21.62849 -20.23154 -19.02050 -18.19596 -17.11352 -16.76465 -16.32633 -16.00428 -15.45480 -15.00977 -14.69336 -14.52677 -14.39350 -13.91101 -13.67974 -13.30610 -12.97031 -12.90562 -12.80793 -12.74922 -12.36981 -12.30646 -12.13293 -11.92804 -11.61901 -11.12713 -10.78142 -10.61263 -9.96872 -9.60141 -9.37483 -8.19651 -6.37570 -0.39737 0.56684 1.02255 1.43865 1.44442 1.49712 1.57123 2.29372 2.33818 2.57742 3.10823 3.92936 3.96707 4.21507 4.36270 4.50106 4.55731 4.71436 4.79501 4.88294 4.90995 5.05457 5.10411 5.13002 5.32546 5.39524 5.45028 5.55281 5.61256 5.65598 5.86781 6.06156 6.68672 6.86845 7.27771 7.44670 8.87147 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.030391 B = 0.005863 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.105234 B = 4774.721191 C = 5453.073453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.072 4.072 3 C -0.027 4.027 4 C -0.154 4.154 5 C -0.212 4.212 6 S 0.211 5.789 7 C -0.304 4.304 8 C 0.570 3.430 9 O -0.576 6.576 10 N -0.705 5.705 11 C 0.272 3.728 12 H 0.002 0.998 13 C -0.132 4.132 14 C -0.549 4.549 15 H 0.071 0.929 16 C 0.016 3.984 17 N -0.916 5.916 18 Si 0.974 3.026 19 H -0.260 1.260 20 H -0.277 1.277 21 H -0.282 1.282 22 H 0.025 0.975 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.097 0.903 26 H 0.060 0.940 27 H 0.174 0.826 28 H 0.206 0.794 29 H 0.397 0.603 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.012 0.988 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.977 5.034 -17.980 18.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.112 4.112 3 C -0.043 4.043 4 C -0.184 4.184 5 C -0.350 4.350 6 S 0.479 5.521 7 C -0.424 4.424 8 C 0.357 3.643 9 O -0.459 6.459 10 N -0.353 5.353 11 C 0.169 3.831 12 H 0.020 0.980 13 C -0.191 4.191 14 C -0.587 4.587 15 H 0.089 0.911 16 C -0.185 4.185 17 N -0.555 5.555 18 Si 0.799 3.201 19 H -0.184 1.184 20 H -0.202 1.202 21 H -0.208 1.208 22 H 0.044 0.956 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.115 0.885 26 H 0.078 0.922 27 H 0.191 0.809 28 H 0.223 0.777 29 H 0.232 0.768 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.031 0.969 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.027 5.520 -16.819 17.818 hybrid contribution 0.032 -0.769 0.229 0.804 sum 2.059 4.751 -16.590 17.379 Atomic orbital electron populations 1.21536 0.94220 1.02044 1.00948 1.20389 0.96701 0.90936 1.03134 1.19829 0.95836 0.97542 0.91055 1.20093 1.04151 0.94483 0.99677 1.25704 1.06242 1.01492 1.01554 1.82974 1.59295 1.09887 0.99904 1.24512 1.19139 1.02055 0.96689 1.17538 0.77715 0.84910 0.84088 1.90707 1.48431 1.20759 1.85960 1.46227 1.65376 1.16440 1.07271 1.18393 0.93027 0.94274 0.77370 0.97982 1.21893 0.97133 0.98741 1.01353 1.21540 1.24336 1.21033 0.91809 0.91090 1.25808 0.96459 0.96050 1.00133 1.70052 1.37397 1.32529 1.15482 0.85263 0.78288 0.78346 0.78238 1.18416 1.20210 1.20795 0.95605 0.91169 0.91543 0.88460 0.92182 0.80894 0.77717 0.76832 0.94207 0.91168 0.96919 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 9.77 71.98 0.70 -2.89 16 2 C -0.07 -2.08 5.50 29.85 0.16 -1.91 16 3 C -0.03 -0.77 5.16 -20.42 -0.11 -0.87 16 4 C -0.15 -3.13 9.96 21.08 0.21 -2.92 16 5 C -0.21 -3.81 10.92 66.81 0.73 -3.08 16 6 S 0.21 5.10 22.16 -56.49 -1.25 3.85 16 7 C -0.30 -10.31 6.45 24.08 0.16 -10.16 16 8 C 0.57 25.16 7.74 86.42 0.67 25.82 16 9 O -0.58 -29.28 13.37 -4.34 -0.06 -29.34 16 10 N -0.70 -31.93 5.06 -450.18 -2.28 -34.21 16 11 C 0.27 14.73 2.56 44.24 0.11 14.84 16 12 H 0.00 0.14 7.58 -2.39 -0.02 0.13 16 13 C -0.13 -6.96 9.26 71.98 0.67 -6.29 16 14 C -0.55 -29.91 8.73 25.60 0.22 -29.69 16 15 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 16 C 0.02 0.85 5.30 84.66 0.45 1.30 16 17 N -0.92 -53.16 11.32 21.45 0.24 -52.91 16 18 Si 0.97 42.44 29.54 68.60 2.03 44.47 16 19 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 20 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 22 H 0.02 0.88 7.59 -2.39 -0.02 0.86 16 23 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 24 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.10 2.08 8.12 -2.39 -0.02 2.06 16 26 H 0.06 2.18 6.33 -2.39 -0.02 2.17 16 27 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 28 H 0.21 2.02 8.06 -2.91 -0.02 2.00 16 29 H 0.40 15.73 7.65 -92.70 -0.71 15.02 16 30 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.07 3.98 6.07 -2.39 -0.01 3.97 16 32 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -68.00 292.21 3.07 -64.93 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.41 Total: 19.05 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 3.98 Total: -15.85 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -2.04 Total: -87.12 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.06 Total: -29.34 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: 5.10 SS G_CDS: -1.25 Total: 3.85 kcal Total: -68.00 3.07 -64.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112010232.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.494 kcal (2) G-P(sol) polarization free energy of solvation -68.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds