Wall clock time and date at job start Sun Mar 29 2020 23:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37470 * 122.44849 * 2 1 4 4 C 1.36648 * 113.29458 * 179.78254 * 3 2 1 5 5 C 1.46580 * 125.45763 * 180.19826 * 4 3 2 6 6 O 1.21696 * 120.00306 * 0.27373 * 5 4 3 7 7 N 1.34781 * 119.99840 * 180.27535 * 5 4 3 8 8 C 1.46507 * 119.99781 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.47344 * 325.00092 * 8 7 5 10 10 C 1.53004 * 109.46911 * 85.00098 * 8 7 5 11 11 C 1.50699 * 109.47133 * 204.99776 * 8 7 5 12 12 H 1.08006 * 119.99742 * 0.02562 * 11 8 7 13 13 C 1.37878 * 120.00089 * 179.97438 * 11 8 7 14 14 N 1.31511 * 119.99804 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 119.99822 * 180.02562 * 13 11 8 16 16 H 1.48495 * 109.47298 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46805 * 120.00030 * 15 13 11 18 18 H 1.48500 * 109.46980 * 240.00130 * 15 13 11 19 19 S 1.75827 * 109.08409 * 0.45552 * 4 3 2 20 20 C 1.33810 * 122.44875 * 180.28630 * 2 1 3 21 21 C 1.50707 * 124.52568 * 359.97438 * 20 2 1 22 22 H 1.09002 * 109.47152 * 269.71234 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.71335 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.71316 * 1 2 3 25 25 H 1.08000 * 123.35157 * 359.97438 * 3 2 1 26 26 H 0.96998 * 120.00278 * 359.97438 * 7 5 4 27 27 H 1.08997 * 109.47122 * 59.99858 * 10 8 7 28 28 H 1.08998 * 109.46834 * 179.97438 * 10 8 7 29 29 H 1.08996 * 109.46971 * 299.99857 * 10 8 7 30 30 H 0.97002 * 119.99740 * 179.97438 * 14 13 11 31 31 H 1.08997 * 109.47284 * 89.99329 * 21 20 2 32 32 H 1.09000 * 109.47096 * 210.00288 * 21 20 2 33 33 H 1.09005 * 109.46716 * 329.99710 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2446 1.1601 0.0000 4 6 3.5937 0.9427 0.0048 5 6 4.6231 1.9862 0.0101 6 8 4.3002 3.1595 0.0155 7 7 5.9273 1.6462 0.0089 8 6 6.9562 2.6891 0.0136 9 1 6.6122 3.5415 -0.5722 10 6 7.2245 3.1342 1.4527 11 6 8.2258 2.1450 -0.5889 12 1 8.2625 1.1245 -0.9406 13 6 9.3402 2.9503 -0.6921 14 7 9.2953 4.1931 -0.2643 15 14 10.9138 2.2759 -1.4396 16 1 10.7048 0.8615 -1.8406 17 1 11.2786 3.0798 -2.6338 18 1 12.0087 2.3507 -0.4392 19 16 3.8969 -0.7892 -0.0039 20 6 2.2250 -1.1292 -0.0056 21 6 1.6355 -2.5162 -0.0120 22 1 -0.3633 -0.0052 1.0277 23 1 -0.3633 -0.8874 -0.5183 24 1 -0.3633 0.8926 -0.5094 25 1 1.8019 2.1452 -0.0004 26 1 6.1847 0.7110 0.0049 27 1 7.5685 2.2818 2.0385 28 1 7.9903 3.9099 1.4562 29 1 6.3062 3.5278 1.8884 30 1 10.0795 4.7595 -0.3366 31 1 1.4929 -2.8456 -1.0412 32 1 2.3126 -3.2011 0.4984 33 1 0.6745 -2.5048 0.5023 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112010311.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:42 Heat of formation + Delta-G solvation = -24.002972 kcal Electronic energy + Delta-G solvation = -16011.610043 eV Core-core repulsion = 13356.322912 eV Total energy + Delta-G solvation = -2655.287131 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.16390 -38.02346 -34.80104 -32.51428 -32.05888 -29.76953 -28.93394 -25.79048 -25.24568 -23.43532 -21.06428 -19.66589 -18.63212 -17.71833 -16.53997 -15.55179 -15.18998 -14.71469 -14.57178 -13.99342 -13.82130 -13.43391 -13.00614 -12.92292 -12.60449 -12.42981 -11.90859 -11.78377 -11.72719 -11.55682 -11.08456 -10.96051 -10.74574 -10.73179 -10.30958 -10.24197 -9.25755 -9.05147 -8.57471 -8.50623 -8.31500 -7.92525 -6.12795 -4.22115 0.71148 1.60872 2.02997 2.51164 3.24118 3.31743 3.34780 3.84366 4.03211 4.37713 4.74134 4.99659 5.13024 5.19858 5.32788 5.37254 5.49364 5.53869 5.60131 5.73188 5.89138 6.08184 6.38659 6.53256 6.82639 6.95910 7.13720 7.40477 7.53898 7.68225 7.90047 8.13309 8.60101 8.75627 9.03664 9.45094 10.93378 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.037706 B = 0.004994 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.415978 B = 5605.254123 C = 6126.934980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.121 4.121 3 C -0.066 4.066 4 C -0.242 4.242 5 C 0.573 3.427 6 O -0.543 6.543 7 N -0.702 5.702 8 C 0.264 3.736 9 H 0.051 0.949 10 C -0.147 4.147 11 C -0.534 4.534 12 H 0.062 0.938 13 C 0.067 3.933 14 N -0.883 5.883 15 Si 0.902 3.098 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 S 0.194 5.806 20 C -0.216 4.216 21 C -0.080 4.080 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.150 0.850 26 H 0.386 0.614 27 H 0.027 0.973 28 H 0.092 0.908 29 H 0.016 0.984 30 H 0.264 0.736 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.732 -12.493 1.071 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.134 4.134 3 C -0.099 4.099 4 C -0.363 4.363 5 C 0.357 3.643 6 O -0.423 6.423 7 N -0.349 5.349 8 C 0.163 3.837 9 H 0.069 0.931 10 C -0.206 4.206 11 C -0.573 4.573 12 H 0.080 0.920 13 C -0.137 4.137 14 N -0.520 5.520 15 Si 0.730 3.270 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.208 1.208 19 S 0.463 5.537 20 C -0.335 4.335 21 C -0.139 4.139 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.168 0.832 26 H 0.219 0.781 27 H 0.046 0.954 28 H 0.110 0.890 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.445 -12.372 1.084 17.582 hybrid contribution -0.268 0.136 -0.363 0.471 sum -12.713 -12.235 0.720 17.659 Atomic orbital electron populations 1.20478 0.89824 1.02578 1.02072 1.18634 0.97541 0.91353 1.05905 1.20576 0.91161 0.99645 0.98510 1.24959 0.98485 0.96904 1.15941 1.17017 0.82348 0.87108 0.77821 1.90778 1.81776 1.18092 1.51661 1.46483 1.05347 1.11204 1.71858 1.18824 0.84220 0.86479 0.94222 0.93072 1.22084 1.00026 1.01294 0.97202 1.21241 0.95795 0.98906 1.41309 0.91981 1.24884 0.98891 0.94750 0.95127 1.69914 1.30004 1.06325 1.45783 0.86377 0.82699 0.79060 0.78876 1.19695 1.20839 1.20831 1.83018 1.02897 0.99171 1.68663 1.23958 0.98742 1.00041 1.10781 1.20323 1.00849 0.90042 1.02662 0.91423 0.91709 0.91440 0.83218 0.78136 0.95377 0.88970 0.96534 0.92587 0.90780 0.91319 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.84 9.56 36.01 0.34 -0.49 16 2 C -0.12 -1.53 5.78 -106.45 -0.62 -2.15 16 3 C -0.07 -1.03 9.79 -40.44 -0.40 -1.42 16 4 C -0.24 -4.23 6.45 -36.79 -0.24 -4.47 16 5 C 0.57 12.54 7.75 -12.89 -0.10 12.44 16 6 O -0.54 -13.77 16.50 5.19 0.09 -13.69 16 7 N -0.70 -15.63 5.07 -56.27 -0.29 -15.91 16 8 C 0.26 6.92 2.56 -69.08 -0.18 6.74 16 9 H 0.05 1.53 7.58 -51.93 -0.39 1.14 16 10 C -0.15 -3.76 9.26 37.16 0.34 -3.41 16 11 C -0.53 -14.40 8.73 -34.44 -0.30 -14.70 16 12 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 13 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 14 N -0.88 -25.02 11.32 55.43 0.63 -24.39 16 15 Si 0.90 20.75 29.54 -169.99 -5.02 15.72 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 S 0.19 2.65 22.10 -107.50 -2.38 0.27 16 20 C -0.22 -2.58 6.28 -35.86 -0.23 -2.81 16 21 C -0.08 -0.67 9.67 36.01 0.35 -0.32 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.50 7.20 -51.93 -0.37 0.12 16 24 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 25 H 0.15 2.28 8.06 -52.49 -0.42 1.86 16 26 H 0.39 7.61 7.65 -40.82 -0.31 7.30 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.53 7.25 -51.93 -0.38 0.16 16 LS Contribution 295.67 15.07 4.46 4.46 Total: -1.00 -30.94 295.67 -7.89 -38.84 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -4.27 Total: 3.59 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -1.11 Total: -8.88 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.34 Total: -40.31 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.09 Total: -13.69 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.38 Total: 0.27 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.94 -7.89 -38.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112010311.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.832 kcal (2) G-P(sol) polarization free energy of solvation -30.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds