Wall clock time and date at job start Sun Mar 29 2020 23:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37470 * 122.44849 * 2 1 4 4 C 1.36648 * 113.29458 * 179.78254 * 3 2 1 5 5 C 1.46580 * 125.45763 * 180.19826 * 4 3 2 6 6 O 1.21696 * 120.00306 * 0.27373 * 5 4 3 7 7 N 1.34781 * 119.99840 * 180.27535 * 5 4 3 8 8 C 1.46507 * 119.99781 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.47344 * 325.00092 * 8 7 5 10 10 C 1.53004 * 109.46911 * 85.00098 * 8 7 5 11 11 C 1.50699 * 109.47133 * 204.99776 * 8 7 5 12 12 H 1.08006 * 119.99742 * 0.02562 * 11 8 7 13 13 C 1.37878 * 120.00089 * 179.97438 * 11 8 7 14 14 N 1.31511 * 119.99804 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 119.99822 * 180.02562 * 13 11 8 16 16 H 1.48495 * 109.47298 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46805 * 120.00030 * 15 13 11 18 18 H 1.48500 * 109.46980 * 240.00130 * 15 13 11 19 19 S 1.75827 * 109.08409 * 0.45552 * 4 3 2 20 20 C 1.33810 * 122.44875 * 180.28630 * 2 1 3 21 21 C 1.50707 * 124.52568 * 359.97438 * 20 2 1 22 22 H 1.09002 * 109.47152 * 269.71234 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.71335 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.71316 * 1 2 3 25 25 H 1.08000 * 123.35157 * 359.97438 * 3 2 1 26 26 H 0.96998 * 120.00278 * 359.97438 * 7 5 4 27 27 H 1.08997 * 109.47122 * 59.99858 * 10 8 7 28 28 H 1.08998 * 109.46834 * 179.97438 * 10 8 7 29 29 H 1.08996 * 109.46971 * 299.99857 * 10 8 7 30 30 H 0.97002 * 119.99740 * 179.97438 * 14 13 11 31 31 H 1.08997 * 109.47284 * 89.99329 * 21 20 2 32 32 H 1.09000 * 109.47096 * 210.00288 * 21 20 2 33 33 H 1.09005 * 109.46716 * 329.99710 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2446 1.1601 0.0000 4 6 3.5937 0.9427 0.0048 5 6 4.6231 1.9862 0.0101 6 8 4.3002 3.1595 0.0155 7 7 5.9273 1.6462 0.0089 8 6 6.9562 2.6891 0.0136 9 1 6.6122 3.5415 -0.5722 10 6 7.2245 3.1342 1.4527 11 6 8.2258 2.1450 -0.5889 12 1 8.2625 1.1245 -0.9406 13 6 9.3402 2.9503 -0.6921 14 7 9.2953 4.1931 -0.2643 15 14 10.9138 2.2759 -1.4396 16 1 10.7048 0.8615 -1.8406 17 1 11.2786 3.0798 -2.6338 18 1 12.0087 2.3507 -0.4392 19 16 3.8969 -0.7892 -0.0039 20 6 2.2250 -1.1292 -0.0056 21 6 1.6355 -2.5162 -0.0120 22 1 -0.3633 -0.0052 1.0277 23 1 -0.3633 -0.8874 -0.5183 24 1 -0.3633 0.8926 -0.5094 25 1 1.8019 2.1452 -0.0004 26 1 6.1847 0.7110 0.0049 27 1 7.5685 2.2818 2.0385 28 1 7.9903 3.9099 1.4562 29 1 6.3062 3.5278 1.8884 30 1 10.0795 4.7595 -0.3366 31 1 1.4929 -2.8456 -1.0412 32 1 2.3126 -3.2011 0.4984 33 1 0.6745 -2.5048 0.5023 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112010311.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:42 Heat of formation + Delta-G solvation = -43.736769 kcal Electronic energy + Delta-G solvation = -16012.465764 eV Core-core repulsion = 13356.322912 eV Total energy + Delta-G solvation = -2656.142853 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.75830 -39.26680 -36.77311 -34.43017 -33.23349 -31.12050 -30.31075 -27.40845 -26.86750 -24.68274 -22.76383 -21.45043 -19.93443 -19.07731 -18.18171 -17.30838 -16.80468 -16.30939 -16.07766 -15.31729 -15.13062 -14.72221 -14.48754 -14.08877 -13.79078 -13.61797 -13.44800 -13.03744 -12.97448 -12.80792 -12.73485 -12.59416 -12.52756 -12.32205 -12.13290 -11.77588 -11.15454 -11.05088 -10.64342 -9.97608 -9.58269 -9.30842 -8.20455 -6.38788 -0.48377 0.47799 0.93708 1.36856 1.44261 1.44713 1.57531 2.22469 2.29741 2.51919 3.10092 3.84380 3.92127 4.19499 4.27999 4.59460 4.67907 4.75978 4.76793 4.86346 4.88039 4.94912 5.02691 5.09880 5.13589 5.34601 5.40612 5.51796 5.56923 5.61575 5.82850 6.03396 6.66227 6.79026 7.23079 7.38633 8.86553 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.037706 B = 0.004994 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.415978 B = 5605.254123 C = 6126.934980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.137 4.137 3 C -0.056 4.056 4 C -0.297 4.297 5 C 0.572 3.428 6 O -0.593 6.593 7 N -0.700 5.700 8 C 0.269 3.731 9 H 0.002 0.998 10 C -0.134 4.134 11 C -0.550 4.550 12 H 0.073 0.927 13 C 0.016 3.984 14 N -0.916 5.916 15 Si 0.976 3.024 16 H -0.260 1.260 17 H -0.282 1.282 18 H -0.276 1.276 19 S 0.221 5.779 20 C -0.191 4.191 21 C -0.084 4.084 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.068 0.932 25 H 0.141 0.859 26 H 0.400 0.600 27 H 0.041 0.959 28 H 0.071 0.929 29 H 0.011 0.989 30 H 0.267 0.733 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.610 -15.850 0.812 21.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.149 4.149 3 C -0.090 4.090 4 C -0.417 4.417 5 C 0.359 3.641 6 O -0.476 6.476 7 N -0.348 5.348 8 C 0.166 3.834 9 H 0.020 0.980 10 C -0.192 4.192 11 C -0.588 4.588 12 H 0.091 0.909 13 C -0.184 4.184 14 N -0.554 5.554 15 Si 0.800 3.200 16 H -0.183 1.183 17 H -0.208 1.208 18 H -0.202 1.202 19 S 0.490 5.510 20 C -0.311 4.311 21 C -0.142 4.142 22 H 0.098 0.902 23 H 0.106 0.894 24 H 0.087 0.913 25 H 0.159 0.841 26 H 0.234 0.766 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.030 0.970 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.333 -15.774 0.830 20.671 hybrid contribution -0.127 1.117 -0.281 1.159 sum -13.460 -14.657 0.549 19.908 Atomic orbital electron populations 1.20560 0.87062 1.03824 1.03250 1.18883 0.99416 0.90234 1.06353 1.20808 0.90837 1.00686 0.96658 1.24489 0.97832 0.98338 1.21054 1.17576 0.82741 0.87607 0.76172 1.90728 1.82516 1.20576 1.53811 1.46216 1.05155 1.11046 1.72357 1.18466 0.85092 0.86131 0.93679 0.98028 1.21906 0.99087 1.01083 0.97171 1.21526 0.96080 0.99483 1.41703 0.90935 1.25824 1.02405 0.94882 0.95321 1.70057 1.31099 1.07677 1.46613 0.85234 0.78100 0.78798 0.77826 1.18348 1.20806 1.20154 1.82835 1.04460 0.95590 1.68148 1.24565 0.97600 1.01847 1.07104 1.20560 1.01900 0.87469 1.04317 0.90213 0.89428 0.91325 0.84088 0.76567 0.93949 0.90991 0.96976 0.92377 0.88949 0.90028 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.34 9.56 71.24 0.68 -0.65 16 2 C -0.14 -3.14 5.78 -21.05 -0.12 -3.26 16 3 C -0.06 -1.72 9.79 21.72 0.21 -1.50 16 4 C -0.30 -10.51 6.45 24.08 0.16 -10.35 16 5 C 0.57 26.19 7.75 86.42 0.67 26.86 16 6 O -0.59 -32.07 16.50 -4.34 -0.07 -32.15 16 7 N -0.70 -32.25 5.07 -450.15 -2.28 -34.53 16 8 C 0.27 14.74 2.56 44.24 0.11 14.85 16 9 H 0.00 0.12 7.58 -2.39 -0.02 0.10 16 10 C -0.13 -7.08 9.26 71.98 0.67 -6.42 16 11 C -0.55 -30.05 8.73 25.60 0.22 -29.82 16 12 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 13 C 0.02 0.87 5.30 84.66 0.45 1.32 16 14 N -0.92 -53.24 11.32 21.45 0.24 -53.00 16 15 Si 0.98 42.40 29.54 68.60 2.03 44.42 16 16 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 17 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 18 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 19 S 0.22 5.64 22.10 -56.49 -1.25 4.39 16 20 C -0.19 -3.94 6.28 24.68 0.15 -3.79 16 21 C -0.08 -0.99 9.67 71.24 0.69 -0.30 16 22 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.09 0.94 7.20 -2.39 -0.02 0.92 16 24 H 0.07 1.03 8.13 -2.38 -0.02 1.01 16 25 H 0.14 4.46 8.06 -2.91 -0.02 4.43 16 26 H 0.40 15.94 7.65 -92.71 -0.71 15.23 16 27 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.07 4.10 6.07 -2.39 -0.01 4.09 16 29 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.10 0.83 7.25 -2.38 -0.02 0.81 16 Total: -1.00 -69.94 295.67 2.97 -66.96 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.41 Total: 16.98 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 3.89 Total: -13.08 kcal Atomic # 7 Polarization: -85.49 SS G_CDS: -2.04 Total: -87.53 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.07 Total: -32.15 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: 5.64 SS G_CDS: -1.25 Total: 4.39 kcal Total: -69.94 2.97 -66.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112010311.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.227 kcal (2) G-P(sol) polarization free energy of solvation -69.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds