Wall clock time and date at job start Sun Mar 29 2020 23:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.37470 * 122.45030 * 2 1 4 4 C 1.36639 * 113.29928 * 180.02562 * 3 2 1 5 5 C 1.46586 * 125.45937 * 179.97438 * 4 3 2 6 6 O 1.21693 * 120.00078 * 0.02562 * 5 4 3 7 7 N 1.34775 * 119.99725 * 179.97438 * 5 4 3 8 8 C 1.46506 * 119.99693 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.46660 * 35.00912 * 8 7 5 10 10 C 1.52997 * 109.47289 * 275.00198 * 8 7 5 11 11 C 1.50708 * 109.46796 * 155.00272 * 8 7 5 12 12 H 1.07995 * 119.99755 * 0.02562 * 11 8 7 13 13 C 1.37873 * 119.99729 * 180.02562 * 11 8 7 14 14 N 1.31516 * 119.99909 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99980 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.46950 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47111 * 120.00368 * 15 13 11 18 18 H 1.48500 * 109.47074 * 240.00161 * 15 13 11 19 19 S 1.75835 * 109.08129 * 0.26461 * 4 3 2 20 20 C 1.33808 * 122.44838 * 180.02562 * 2 1 3 21 21 C 1.50702 * 124.52560 * 359.95220 * 20 2 1 22 22 H 1.08999 * 109.46693 * 89.97509 * 1 2 3 23 23 H 1.09001 * 109.46860 * 209.97326 * 1 2 3 24 24 H 1.09005 * 109.46930 * 329.97792 * 1 2 3 25 25 H 1.08002 * 123.35003 * 0.02562 * 3 2 1 26 26 H 0.97000 * 120.00190 * 0.02562 * 7 5 4 27 27 H 1.09002 * 109.47153 * 179.97438 * 10 8 7 28 28 H 1.09001 * 109.46832 * 60.00146 * 10 8 7 29 29 H 1.09004 * 109.47261 * 300.00128 * 10 8 7 30 30 H 0.97002 * 119.99804 * 180.02562 * 14 13 11 31 31 H 1.09000 * 109.47577 * 89.99762 * 21 20 2 32 32 H 1.09004 * 109.47388 * 209.99773 * 21 20 2 33 33 H 1.09004 * 109.46775 * 329.99514 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2447 1.1601 0.0000 4 6 3.5937 0.9427 -0.0006 5 6 4.6232 1.9863 -0.0012 6 8 4.3002 3.1596 -0.0009 7 7 5.9273 1.6463 -0.0012 8 6 6.9562 2.6892 -0.0025 9 1 6.6122 3.5395 0.5864 10 6 7.2245 3.1393 -1.4399 11 6 8.2259 2.1430 0.5982 12 1 8.2628 1.1211 0.9456 13 6 9.3402 2.9479 0.7041 14 7 9.2950 4.1924 0.2814 15 14 10.9138 2.2711 1.4493 16 1 10.7052 0.8549 1.8444 17 1 12.0087 2.3493 0.4491 18 1 11.2787 3.0708 2.6461 19 16 3.8969 -0.7892 -0.0088 20 6 2.2250 -1.1292 -0.0005 21 6 1.6356 -2.5161 -0.0001 22 1 -0.3633 0.0004 -1.0277 23 1 -0.3633 -0.8902 0.5134 24 1 -0.3633 0.8898 0.5142 25 1 1.8020 2.1452 0.0004 26 1 6.1847 0.7110 -0.0012 27 1 7.9897 3.9156 -1.4408 28 1 6.3061 3.5344 -1.8743 29 1 7.5685 2.2889 -2.0287 30 1 10.0792 4.7586 0.3556 31 1 1.4926 -2.8506 -1.0276 32 1 2.3129 -3.1987 0.5132 33 1 0.6747 -2.5023 0.5145 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112010313.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:45 Heat of formation + Delta-G solvation = -43.262512 kcal Electronic energy + Delta-G solvation = -16012.654104 eV Core-core repulsion = 13356.531816 eV Total energy + Delta-G solvation = -2656.122288 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.75973 -39.26959 -36.77359 -34.43023 -33.23950 -31.12011 -30.30761 -27.40908 -26.87603 -24.68136 -22.76294 -21.45077 -19.93281 -19.07663 -18.18239 -17.31119 -16.80835 -16.30876 -16.08437 -15.31932 -15.15039 -14.73736 -14.49127 -14.10853 -13.79862 -13.64479 -13.39082 -13.03297 -12.97162 -12.81463 -12.75723 -12.59663 -12.46264 -12.32313 -12.13232 -11.77599 -11.15454 -11.05152 -10.64324 -9.97764 -9.58243 -9.31283 -8.20444 -6.38785 -0.48213 0.47829 0.93700 1.37174 1.44299 1.44686 1.57540 2.22443 2.29790 2.51888 3.10105 3.84061 3.92276 4.19950 4.28293 4.60142 4.67647 4.70223 4.74055 4.86193 4.90253 4.95203 5.02639 5.10887 5.12701 5.35251 5.43036 5.51788 5.57160 5.61504 5.82832 6.03318 6.66255 6.78993 7.23068 7.38628 8.86567 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.037715 B = 0.004993 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.227628 B = 5606.111015 C = 6126.929827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.137 4.137 3 C -0.056 4.056 4 C -0.297 4.297 5 C 0.572 3.428 6 O -0.593 6.593 7 N -0.700 5.700 8 C 0.269 3.731 9 H 0.002 0.998 10 C -0.134 4.134 11 C -0.550 4.550 12 H 0.073 0.927 13 C 0.016 3.984 14 N -0.916 5.916 15 Si 0.976 3.024 16 H -0.260 1.260 17 H -0.276 1.276 18 H -0.282 1.282 19 S 0.220 5.780 20 C -0.191 4.191 21 C -0.084 4.084 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.067 0.933 25 H 0.141 0.859 26 H 0.400 0.600 27 H 0.071 0.929 28 H 0.011 0.989 29 H 0.042 0.958 30 H 0.267 0.733 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.622 -15.849 -0.932 21.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.149 4.149 3 C -0.090 4.090 4 C -0.417 4.417 5 C 0.359 3.641 6 O -0.476 6.476 7 N -0.348 5.348 8 C 0.166 3.834 9 H 0.020 0.980 10 C -0.192 4.192 11 C -0.588 4.588 12 H 0.091 0.909 13 C -0.184 4.184 14 N -0.555 5.555 15 Si 0.800 3.200 16 H -0.183 1.183 17 H -0.202 1.202 18 H -0.208 1.208 19 S 0.489 5.511 20 C -0.311 4.311 21 C -0.143 4.143 22 H 0.098 0.902 23 H 0.107 0.893 24 H 0.086 0.914 25 H 0.159 0.841 26 H 0.234 0.766 27 H 0.090 0.910 28 H 0.030 0.970 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.345 -15.772 -0.958 20.682 hybrid contribution -0.125 1.116 0.282 1.158 sum -13.470 -14.657 -0.675 19.918 Atomic orbital electron populations 1.20576 0.87064 1.03827 1.03238 1.18876 0.99420 0.90239 1.06355 1.20806 0.90835 1.00684 0.96657 1.24489 0.97833 0.98338 1.21025 1.17574 0.82742 0.87605 0.76173 1.90728 1.82513 1.20578 1.53810 1.46215 1.05156 1.11046 1.72353 1.18467 0.85095 0.86135 0.93679 0.98021 1.21907 0.99090 1.01073 0.97173 1.21525 0.96075 0.99358 1.41827 0.90933 1.25823 1.02407 0.94890 0.95312 1.70059 1.31095 1.07600 1.46698 0.85233 0.78098 0.78802 0.77824 1.18347 1.20164 1.20800 1.82838 1.04462 0.95591 1.68203 1.24552 0.97606 1.01850 1.07120 1.20576 1.01893 0.87466 1.04330 0.90233 0.89321 0.91383 0.84087 0.76565 0.90995 0.96982 0.93939 0.92379 0.88914 0.90115 0.88335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.34 9.84 71.24 0.70 -0.64 16 2 C -0.14 -3.14 5.78 -21.05 -0.12 -3.27 16 3 C -0.06 -1.71 9.80 21.71 0.21 -1.50 16 4 C -0.30 -10.50 6.45 24.07 0.16 -10.34 16 5 C 0.57 26.19 7.75 86.42 0.67 26.86 16 6 O -0.59 -32.07 16.50 -4.32 -0.07 -32.15 16 7 N -0.70 -32.25 5.06 -450.16 -2.28 -34.53 16 8 C 0.27 14.73 2.56 44.25 0.11 14.85 16 9 H 0.00 0.12 7.57 -2.39 -0.02 0.10 16 10 C -0.13 -7.08 9.26 71.98 0.67 -6.41 16 11 C -0.55 -30.04 8.73 25.60 0.22 -29.82 16 12 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 13 C 0.02 0.87 5.30 84.65 0.45 1.32 16 14 N -0.92 -53.25 11.32 21.45 0.24 -53.01 16 15 Si 0.98 42.40 29.54 68.60 2.03 44.43 16 16 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 17 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 18 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 19 S 0.22 5.63 22.10 -56.49 -1.25 4.38 16 20 C -0.19 -3.95 6.28 24.68 0.15 -3.79 16 21 C -0.08 -0.99 9.98 71.24 0.71 -0.28 16 22 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.09 0.93 6.54 -2.39 -0.02 0.92 16 24 H 0.07 1.02 8.13 -2.38 -0.02 1.00 16 25 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 26 H 0.40 15.94 7.65 -92.71 -0.71 15.23 16 27 H 0.07 4.10 6.07 -2.39 -0.01 4.08 16 28 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.04 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.10 0.82 6.57 -2.39 -0.02 0.81 16 Total: -1.00 -69.96 294.93 3.02 -66.94 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.41 Total: 16.97 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 3.94 Total: -13.03 kcal Atomic # 7 Polarization: -85.50 SS G_CDS: -2.04 Total: -87.54 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.07 Total: -32.15 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: 5.63 SS G_CDS: -1.25 Total: 4.38 kcal Total: -69.96 3.02 -66.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112010313.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.679 kcal (2) G-P(sol) polarization free energy of solvation -69.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds